Wall clock time and date at job start Wed Apr 1 2020 02:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99550 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47205 * 300.00107 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00263 * 3 2 1 7 7 C 1.38808 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00232 * 192.52217 * 7 2 1 9 9 N 1.36942 * 119.99791 * 12.52689 * 7 2 1 10 10 C 1.46923 * 120.62599 * 210.58612 * 9 7 2 11 11 C 1.53192 * 108.77430 * 233.62787 * 10 9 7 12 12 C 1.53050 * 109.31096 * 305.36476 * 11 10 9 13 13 H 1.08997 * 109.44872 * 301.35141 * 12 11 10 14 14 N 1.46499 * 109.45732 * 181.38509 * 12 11 10 15 15 C 1.34781 * 120.00166 * 84.93546 * 14 12 11 16 16 O 1.21281 * 119.99842 * 5.13368 * 15 14 12 17 17 C 1.50698 * 120.00054 * 185.13405 * 15 14 12 18 18 C 1.50703 * 112.84786 * 296.97196 * 17 15 14 19 19 C 1.38233 * 119.99640 * 114.57363 * 18 17 15 20 20 C 1.38232 * 119.99948 * 180.02562 * 19 18 17 21 21 C 1.38234 * 120.00006 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99910 * 359.97438 * 21 20 19 23 23 C 1.38227 * 119.99954 * 0.04448 * 22 21 20 24 24 C 1.53778 * 113.61086 * 68.16900 * 17 15 14 25 25 C 1.53953 * 87.01873 * 89.23061 * 24 17 15 26 26 C 1.53776 * 87.11238 * 25.36081 * 25 24 17 27 27 C 1.53039 * 109.53536 * 61.36404 * 12 11 10 28 28 H 1.08997 * 109.49942 * 58.62033 * 27 12 11 29 29 O 1.42903 * 109.49473 * 178.68311 * 27 12 11 30 30 C 1.46925 * 120.63092 * 30.60007 * 9 7 2 31 31 H 0.97001 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.59112 * 353.41466 * 10 9 7 33 33 H 1.09004 * 109.58883 * 113.69761 * 10 9 7 34 34 H 1.08996 * 109.49883 * 185.41827 * 11 10 9 35 35 H 1.09002 * 109.49861 * 65.31507 * 11 10 9 36 36 H 0.96998 * 119.99780 * 264.93039 * 14 12 11 37 37 H 1.08005 * 120.00308 * 0.02562 * 19 18 17 38 38 H 1.08002 * 120.00268 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00283 * 179.70369 * 21 20 19 40 40 H 1.07999 * 120.00008 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.00216 * 179.97438 * 23 22 21 42 42 H 1.09004 * 113.61079 * 203.74431 * 24 17 15 43 43 H 1.08998 * 113.62127 * 334.64670 * 24 17 15 44 44 H 1.08997 * 113.53578 * 270.80382 * 25 24 17 45 45 H 1.08997 * 113.74145 * 139.94347 * 25 24 17 46 46 H 1.09003 * 113.61096 * 220.09162 * 26 25 24 47 47 H 1.08994 * 113.61534 * 89.18884 * 26 25 24 48 48 H 0.96699 * 113.99741 * 180.02562 * 29 27 12 49 49 H 1.08995 * 109.58639 * 6.59100 * 30 9 7 50 50 H 1.08997 * 109.58733 * 246.15687 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0710 -1.2132 0.2022 9 7 1.3501 -2.3738 -0.2583 10 6 1.7998 -3.6350 0.3466 11 6 2.0103 -4.6676 -0.7653 12 6 0.7284 -4.7891 -1.5925 13 1 -0.0957 -5.0853 -0.9434 14 7 0.9151 -5.7998 -2.6364 15 6 0.7072 -7.1021 -2.3584 16 8 0.2763 -7.4292 -1.2729 17 6 1.0101 -8.1519 -3.3963 18 6 0.1566 -8.0174 -4.6311 19 6 0.7395 -7.6953 -5.8424 20 6 -0.0434 -7.5714 -6.9749 21 6 -1.4092 -7.7701 -6.8961 22 6 -1.9919 -8.0932 -5.6849 23 6 -1.2090 -8.2167 -4.5524 24 6 2.5102 -8.3049 -3.6980 25 6 2.5507 -9.3432 -2.5620 26 6 1.0556 -9.5815 -2.8316 27 6 0.4075 -3.4402 -2.2403 28 1 1.2417 -3.1317 -2.8705 29 8 -0.7725 -3.5624 -3.0371 30 6 0.1789 -2.3937 -1.1452 31 1 -0.4851 0.8400 0.0004 32 1 2.7383 -3.4720 0.8763 33 1 1.0441 -3.9954 1.0446 34 1 2.2509 -5.6343 -0.3232 35 1 2.8296 -4.3472 -1.4090 36 1 1.1884 -5.5317 -3.5276 37 1 1.8066 -7.5405 -5.9041 38 1 0.4118 -7.3194 -7.9213 39 1 -2.0215 -7.6686 -7.7800 40 1 -3.0589 -8.2481 -5.6233 41 1 -1.6643 -8.4688 -3.6061 42 1 2.7169 -8.7260 -4.6819 43 1 3.0913 -7.4064 -3.4905 44 1 2.7542 -8.9095 -1.5830 45 1 3.1770 -10.2082 -2.7802 46 1 0.4640 -9.7120 -1.9254 47 1 0.8639 -10.3521 -3.5781 48 1 -1.0352 -2.7434 -3.4790 49 1 0.0481 -1.4117 -1.5997 50 1 -0.7100 -2.6542 -0.5707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090417532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:37 Heat of formation + Delta-G solvation = -40.004242 kcal Electronic energy + Delta-G solvation = -31329.359163 eV Core-core repulsion = 27321.515059 eV Total energy + Delta-G solvation = -4007.844105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.11697 -40.31123 -39.36677 -38.05891 -36.91560 -35.83958 -33.97358 -32.22780 -31.81416 -31.22221 -30.53836 -27.67960 -26.82015 -26.42547 -24.30127 -23.65263 -23.24503 -22.69431 -22.12795 -21.29704 -20.01019 -18.85436 -18.33032 -18.13972 -17.54465 -17.43512 -16.72028 -16.51885 -16.03075 -15.77346 -15.63201 -15.53037 -15.28719 -15.10072 -14.97210 -14.45888 -14.30813 -14.26327 -13.87604 -13.70995 -13.58154 -13.38605 -13.30189 -13.04163 -12.87193 -12.72149 -12.54532 -12.48109 -12.11809 -12.01840 -11.99545 -11.90967 -11.90570 -11.45453 -11.33645 -11.24432 -11.03443 -10.81851 -10.64110 -10.07398 -9.80077 -9.57787 -8.74294 -7.91533 -5.43746 0.41054 0.51871 1.47020 1.49321 1.57763 1.59840 2.09683 2.48062 2.86241 3.09210 3.26756 3.44440 3.59268 3.61802 3.64917 3.77755 3.86717 3.90925 4.04027 4.14908 4.17661 4.28478 4.31667 4.38664 4.42266 4.44140 4.66235 4.68015 4.70881 4.76834 4.81797 4.86194 4.90987 5.00950 5.01985 5.07003 5.07553 5.13639 5.15584 5.17279 5.30274 5.42181 5.46766 5.55055 5.60057 5.62107 5.64885 5.67844 6.12301 6.33538 6.54031 6.79156 7.09059 7.22288 7.74941 8.29518 9.15022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.003005 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.627035 B = 9317.003371 C =10241.729823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.121 4.121 12 C 0.170 3.830 13 H 0.050 0.950 14 N -0.698 5.698 15 C 0.540 3.460 16 O -0.582 6.582 17 C -0.069 4.069 18 C -0.074 4.074 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.138 4.138 26 C -0.113 4.113 27 C 0.093 3.907 28 H 0.066 0.934 29 O -0.574 6.574 30 C 0.160 3.840 31 H 0.252 0.748 32 H 0.069 0.931 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.409 0.591 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.097 0.903 46 H 0.057 0.943 47 H 0.106 0.894 48 H 0.391 0.609 49 H 0.071 0.929 50 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -17.915 -17.076 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.800 3.200 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.161 4.161 12 C 0.065 3.935 13 H 0.069 0.931 14 N -0.347 5.347 15 C 0.327 3.673 16 O -0.462 6.462 17 C -0.072 4.072 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.149 4.149 25 C -0.175 4.175 26 C -0.151 4.151 27 C 0.032 3.968 28 H 0.084 0.916 29 O -0.381 6.381 30 C 0.033 3.967 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.024 0.976 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.245 0.755 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.118 0.882 42 H 0.141 0.859 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.076 0.924 47 H 0.124 0.876 48 H 0.240 0.760 49 H 0.089 0.911 50 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 3.768 -18.616 -16.076 24.884 hybrid contribution -0.461 1.880 0.310 1.960 sum 3.307 -16.736 -15.767 23.230 Atomic orbital electron populations 1.70162 1.06792 1.26016 1.55229 1.25948 0.96120 1.01725 1.00440 0.85139 0.78687 0.79411 0.76777 1.18769 1.21335 1.22207 1.19593 0.91859 0.84829 1.43324 0.90899 1.44219 1.33059 1.03847 1.51756 1.21037 0.97952 0.85983 0.93432 1.22200 0.96643 0.99243 0.97995 1.20657 0.97514 0.86228 0.89146 0.93136 1.45787 1.68911 1.05482 1.14522 1.20345 0.75897 0.83393 0.87647 1.90662 1.46744 1.81972 1.26814 1.20885 0.98617 0.95380 0.92308 1.19383 0.93153 1.01167 0.93779 1.21326 1.01354 0.99141 0.91355 1.21493 0.93849 0.99030 0.99271 1.21488 0.95855 0.98984 0.97915 1.21328 1.00387 0.99938 0.92886 1.21050 0.94122 1.00987 0.98549 1.23121 0.90415 1.00334 1.01051 1.22827 0.96108 1.00240 0.98366 1.22882 0.97818 0.93351 1.01016 1.22566 0.87305 0.94492 0.92447 0.91634 1.86419 1.45652 1.39717 1.66286 1.21190 0.88032 0.97337 0.90156 0.93923 0.91286 0.97600 0.91172 0.90407 0.75547 0.83387 0.83304 0.83976 0.85204 0.88242 0.85910 0.90406 0.91855 0.88484 0.92378 0.87597 0.76022 0.91056 0.99021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 11.10 21.65 0.24 -54.04 16 2 C -0.05 -2.54 5.01 84.86 0.43 -2.11 16 3 Si 0.97 43.36 29.57 68.60 2.03 45.39 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.27 -14.22 9.58 84.03 0.81 -13.41 16 8 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 9 N -0.60 -30.10 2.99 -699.12 -2.09 -32.18 16 10 C 0.14 6.09 6.52 86.36 0.56 6.65 16 11 C -0.12 -4.30 5.65 30.68 0.17 -4.12 16 12 C 0.17 6.28 2.16 45.02 0.10 6.37 16 13 H 0.05 2.27 7.51 -2.39 -0.02 2.25 16 14 N -0.70 -21.14 4.91 -442.39 -2.17 -23.31 16 15 C 0.54 16.86 6.28 87.66 0.55 17.41 16 16 O -0.58 -23.25 15.55 -3.03 -0.05 -23.30 16 17 C -0.07 -1.53 0.92 -53.15 -0.05 -1.58 16 18 C -0.07 -1.58 4.86 -19.87 -0.10 -1.67 16 19 C -0.11 -1.84 9.06 22.27 0.20 -1.64 16 20 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 21 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 22 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 23 C -0.13 -3.08 9.46 22.27 0.21 -2.87 16 24 C -0.11 -1.76 6.34 31.18 0.20 -1.57 16 25 C -0.14 -2.47 7.81 31.18 0.24 -2.22 16 26 C -0.11 -2.38 6.97 31.12 0.22 -2.16 16 27 C 0.09 3.51 3.14 30.67 0.10 3.60 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 O -0.57 -20.07 13.16 -148.98 -1.96 -22.03 16 30 C 0.16 7.68 4.89 86.36 0.42 8.10 16 31 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 33 H 0.01 0.27 8.14 -2.38 -0.02 0.26 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.41 10.49 8.61 -92.71 -0.80 9.69 16 37 H 0.15 1.64 6.39 -2.91 -0.02 1.62 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.10 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.12 1.27 6.77 -2.39 -0.02 1.25 16 43 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.06 1.54 7.34 -2.39 -0.02 1.52 16 47 H 0.11 1.80 8.09 -2.39 -0.02 1.78 16 48 H 0.39 10.89 9.08 -74.06 -0.67 10.21 16 49 H 0.07 3.73 6.10 -2.39 -0.01 3.72 16 50 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 Total: -1.00 -71.03 398.70 0.22 -70.82 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.52 Total: 35.52 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.73 Total: 3.13 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.02 Total: -109.53 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -2.01 Total: -45.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.03 0.22 -70.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090417532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.812 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds