Wall clock time and date at job start Wed Apr 1 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48501 * 109.46526 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47326 * 299.99608 * 3 2 1 6 6 H 1.48492 * 109.47202 * 59.99920 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00088 * 197.38255 * 7 2 1 9 9 N 1.36943 * 119.99976 * 17.37670 * 7 2 1 10 10 C 1.46926 * 120.62631 * 27.66165 * 9 7 2 11 11 C 1.53192 * 108.77678 * 126.41250 * 10 9 7 12 12 C 1.53047 * 109.31079 * 54.63170 * 11 10 9 13 13 H 1.09001 * 109.45524 * 178.61887 * 12 11 10 14 14 N 1.46499 * 109.45907 * 58.65750 * 12 11 10 15 15 C 1.34774 * 119.99852 * 84.93273 * 14 12 11 16 16 O 1.21281 * 120.00095 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99753 * 179.97438 * 15 14 12 18 18 C 1.50699 * 109.46989 * 179.97438 * 17 15 14 19 19 C 1.38254 * 119.99897 * 90.00458 * 18 17 15 20 20 C 1.38219 * 119.99819 * 179.97438 * 19 18 17 21 21 C 1.38255 * 120.00028 * 0.02562 * 20 19 18 22 22 C 1.38211 * 120.00021 * 359.95974 * 21 20 19 23 23 C 1.50705 * 119.99631 * 180.02562 * 22 21 20 24 24 C 1.52995 * 117.50123 * 8.62350 * 23 22 21 25 25 C 1.52999 * 117.50049 * 299.99879 * 23 22 21 26 26 C 1.38223 * 120.00188 * 269.73202 * 18 17 15 27 27 C 1.53039 * 109.53871 * 298.63789 * 12 11 10 28 28 H 1.09006 * 109.52367 * 301.39666 * 27 12 11 29 29 O 1.42897 * 109.49818 * 181.31892 * 27 12 11 30 30 C 1.46925 * 120.63289 * 207.68161 * 9 7 2 31 31 H 0.96998 * 120.00601 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58363 * 246.19783 * 10 9 7 33 33 H 1.08997 * 109.59292 * 6.62235 * 10 9 7 34 34 H 1.08992 * 109.49950 * 174.58303 * 11 10 9 35 35 H 1.09000 * 109.49716 * 294.65360 * 11 10 9 36 36 H 0.97004 * 119.99698 * 264.92998 * 14 12 11 37 37 H 1.08995 * 109.47755 * 300.00155 * 17 15 14 38 38 H 1.09010 * 109.46910 * 60.00576 * 17 15 14 39 39 H 1.07993 * 120.00101 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.99582 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.99575 * 179.97438 * 21 20 19 42 42 H 1.08997 * 115.54472 * 154.33617 * 23 22 21 43 43 H 1.09006 * 117.50097 * 359.97438 * 24 23 22 44 44 H 1.09000 * 117.49858 * 145.02264 * 24 23 22 45 45 H 1.08998 * 117.50310 * 214.98130 * 25 23 22 46 46 H 1.09007 * 117.49813 * 359.97438 * 25 23 22 47 47 H 1.08005 * 119.99642 * 359.97438 * 26 18 17 48 48 H 0.96699 * 113.99903 * 180.16056 * 29 27 12 49 49 H 1.08997 * 109.58240 * 113.79907 * 30 9 7 50 50 H 1.08997 * 109.58559 * 353.37470 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2800 9 7 1.3725 -2.3612 -0.3531 10 6 0.2281 -2.3347 -1.2741 11 6 0.5010 -3.3050 -2.4278 12 6 0.8189 -4.6901 -1.8597 13 1 0.9894 -5.3882 -2.6793 14 7 -0.3090 -5.1557 -1.0489 15 6 -1.3507 -5.7766 -1.6369 16 8 -1.3546 -5.9494 -2.8373 17 6 -2.5106 -6.2560 -0.8027 18 6 -3.5342 -6.9101 -1.6945 19 6 -3.4596 -8.2660 -1.9537 20 6 -4.3988 -8.8660 -2.7713 21 6 -5.4125 -8.1101 -3.3303 22 6 -5.4872 -6.7546 -3.0709 23 6 -6.5926 -5.9308 -3.6798 24 6 -7.7123 -6.6781 -4.4068 25 6 -6.6787 -5.8824 -5.2066 26 6 -4.5510 -6.1554 -2.2489 27 6 2.0745 -4.6101 -0.9884 28 1 2.9088 -4.2405 -1.5847 29 8 2.3881 -5.9096 -0.4834 30 6 1.8194 -3.6547 0.1815 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6741 -2.6411 -0.7447 33 1 0.0987 -1.3265 -1.6675 34 1 -0.3797 -3.3673 -3.0669 35 1 1.3493 -2.9471 -3.0111 36 1 -0.3059 -5.0171 -0.0888 37 1 -2.1554 -6.9773 -0.0668 38 1 -2.9647 -5.4078 -0.2903 39 1 -2.6676 -8.8564 -1.5174 40 1 -4.3408 -9.9253 -2.9734 41 1 -6.1461 -8.5789 -3.9694 42 1 -6.8627 -5.0282 -3.1316 43 1 -7.6493 -7.7656 -4.4452 44 1 -8.7195 -6.2672 -4.3370 45 1 -7.0060 -4.9482 -5.6629 46 1 -5.9356 -6.4461 -5.7707 47 1 -4.6120 -5.0970 -2.0425 48 1 3.1733 -5.9334 0.0806 49 1 1.0470 -4.0686 0.8296 50 1 2.7401 -3.5173 0.7485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090446411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:39 Heat of formation + Delta-G solvation = -16.912875 kcal Electronic energy + Delta-G solvation = -30266.008968 eV Core-core repulsion = 26259.166180 eV Total energy + Delta-G solvation = -4006.842788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.16312 -39.43040 -37.93037 -36.80361 -35.44722 -33.98910 -32.67881 -31.66439 -30.80501 -30.18496 -28.71364 -27.34392 -25.27644 -23.86036 -22.80178 -22.39813 -22.13416 -21.84156 -20.86075 -19.51265 -18.70722 -17.26596 -17.00578 -16.87314 -16.46837 -16.02051 -15.36340 -15.31121 -14.95479 -14.64012 -14.39685 -14.29570 -14.00003 -13.80106 -13.59433 -13.31878 -13.15743 -12.75389 -12.59929 -12.38456 -12.27075 -11.98604 -11.81467 -11.76330 -11.64792 -11.23679 -11.17132 -10.99345 -10.92413 -10.75377 -10.67750 -10.50898 -10.37846 -10.21431 -9.97724 -9.84052 -9.51685 -9.43591 -8.72582 -8.58648 -8.51882 -8.48768 -6.80351 -5.89561 -3.33488 1.31863 1.41530 3.01728 3.31024 3.39406 3.40608 3.40975 3.67089 4.02587 4.34968 4.39267 4.51181 4.65291 4.75060 4.81955 4.89731 5.00416 5.07948 5.21203 5.26163 5.29975 5.34445 5.38631 5.45630 5.46200 5.56359 5.57905 5.60808 5.69291 5.70865 5.87120 5.90316 5.96573 6.03890 6.06346 6.09174 6.26213 6.43490 6.46436 6.54888 6.58095 6.63521 6.64049 6.69127 6.98025 7.01378 7.25904 7.56775 7.69511 7.90386 7.92997 8.33021 8.62493 9.08842 9.71229 10.26398 11.18481 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.002628 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.133010 B =10651.923841 C =12165.849217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.153 4.153 12 C 0.167 3.833 13 H 0.077 0.923 14 N -0.706 5.706 15 C 0.516 3.484 16 O -0.543 6.543 17 C -0.106 4.106 18 C -0.053 4.053 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.052 4.052 23 C -0.116 4.116 24 C -0.179 4.179 25 C -0.169 4.169 26 C -0.097 4.097 27 C 0.075 3.925 28 H 0.065 0.935 29 O -0.571 6.571 30 C 0.119 3.881 31 H 0.254 0.746 32 H 0.021 0.979 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.121 0.879 48 H 0.373 0.627 49 H 0.023 0.977 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 -15.203 -3.422 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.095 0.905 14 N -0.358 5.358 15 C 0.301 3.699 16 O -0.420 6.420 17 C -0.146 4.146 18 C -0.053 4.053 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.144 4.144 22 C -0.052 4.052 23 C -0.134 4.134 24 C -0.215 4.215 25 C -0.206 4.206 26 C -0.115 4.115 27 C 0.015 3.985 28 H 0.083 0.917 29 O -0.375 6.375 30 C -0.009 4.009 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.139 0.861 48 H 0.220 0.780 49 H 0.040 0.960 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.982 -15.329 -4.618 18.866 hybrid contribution 0.997 1.220 0.829 1.780 sum -8.986 -14.109 -3.788 17.151 Atomic orbital electron populations 1.70037 1.05282 1.25603 1.53308 1.25046 0.95298 0.98501 1.00523 0.86220 0.79356 0.83797 0.77346 1.20232 1.21452 1.21673 1.19194 0.92728 0.84662 1.42184 0.91551 1.44026 1.35966 1.00879 1.50270 1.20784 0.88424 0.98366 0.87688 1.22584 1.01456 0.94877 1.00423 1.20788 0.83828 0.96301 0.92836 0.90504 1.45938 1.19582 1.58668 1.11582 1.20335 0.83296 0.77688 0.88542 1.90688 1.79532 1.56891 1.14894 1.20702 0.93878 1.02159 0.97825 1.19260 0.94821 0.93574 0.97681 1.20958 0.98657 0.94314 0.98861 1.21009 0.95097 0.99604 0.97784 1.20949 0.98987 0.93535 1.00883 1.19035 0.95442 0.93338 0.97397 1.21031 0.96988 1.00729 0.94649 1.23056 0.94643 0.99292 1.04555 1.23021 1.02136 1.02440 0.92993 1.20795 0.94150 0.99517 0.97048 1.22751 0.96210 0.82924 0.96659 0.91689 1.86481 1.50644 1.30310 1.70083 1.21531 0.98439 0.87716 0.93169 0.93553 0.96069 0.89275 0.91890 0.91608 0.76315 0.88124 0.87866 0.86326 0.86251 0.86342 0.86936 0.88464 0.88556 0.88456 0.88543 0.86070 0.78042 0.95961 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.06 11.19 55.49 0.62 -24.44 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.06 16 3 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.26 -6.71 9.59 -15.06 -0.14 -6.86 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -13.69 3.00 -172.33 -0.52 -14.21 16 10 C 0.17 3.95 5.05 -3.71 -0.02 3.93 16 11 C -0.15 -3.00 5.77 -26.61 -0.15 -3.16 16 12 C 0.17 2.99 2.47 -67.89 -0.17 2.82 16 13 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 14 N -0.71 -11.61 4.15 -53.76 -0.22 -11.83 16 15 C 0.52 8.49 7.79 -10.99 -0.09 8.41 16 16 O -0.54 -10.84 15.70 5.56 0.09 -10.75 16 17 C -0.11 -1.34 5.83 -29.03 -0.17 -1.51 16 18 C -0.05 -0.71 4.37 -104.62 -0.46 -1.17 16 19 C -0.11 -1.37 9.70 -39.58 -0.38 -1.75 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 21 C -0.13 -1.42 9.30 -39.58 -0.37 -1.79 16 22 C -0.05 -0.64 5.61 -104.62 -0.59 -1.22 16 23 C -0.12 -1.19 6.04 -91.77 -0.55 -1.75 16 24 C -0.18 -1.48 9.86 -26.73 -0.26 -1.74 16 25 C -0.17 -1.58 10.16 -26.73 -0.27 -1.85 16 26 C -0.10 -1.30 9.39 -39.58 -0.37 -1.67 16 27 C 0.08 1.26 3.36 -26.61 -0.09 1.17 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 29 O -0.57 -8.38 13.21 -35.23 -0.47 -8.85 16 30 C 0.12 2.25 5.84 -3.71 -0.02 2.23 16 31 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.02 0.50 7.74 -51.93 -0.40 0.10 16 33 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.40 6.23 6.87 -40.82 -0.28 5.95 16 37 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.10 1.17 8.08 -51.92 -0.42 0.75 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.09 6.02 -52.48 -0.32 0.77 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.10 0.75 6.18 -51.93 -0.32 0.43 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 48 H 0.37 3.90 9.08 45.56 0.41 4.31 16 49 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 50 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -31.82 400.85 -11.06 -42.88 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -6.99 Total: 12.79 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -4.59 Total: -7.57 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.38 Total: -19.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.82 -11.06 -42.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090446411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.966 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds