Wall clock time and date at job start Wed Apr 1 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99563 * 2 1 4 4 H 1.48501 * 109.46526 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47326 * 299.99608 * 3 2 1 6 6 H 1.48492 * 109.47202 * 59.99920 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00088 * 197.38255 * 7 2 1 9 9 N 1.36943 * 119.99976 * 17.37670 * 7 2 1 10 10 C 1.46926 * 120.62631 * 27.66165 * 9 7 2 11 11 C 1.53192 * 108.77678 * 126.41250 * 10 9 7 12 12 C 1.53047 * 109.31079 * 54.63170 * 11 10 9 13 13 H 1.09001 * 109.45524 * 178.61887 * 12 11 10 14 14 N 1.46499 * 109.45907 * 58.65750 * 12 11 10 15 15 C 1.34774 * 119.99852 * 84.93273 * 14 12 11 16 16 O 1.21281 * 120.00095 * 359.97438 * 15 14 12 17 17 C 1.50703 * 119.99753 * 179.97438 * 15 14 12 18 18 C 1.50699 * 109.46989 * 179.97438 * 17 15 14 19 19 C 1.38254 * 119.99897 * 90.00458 * 18 17 15 20 20 C 1.38219 * 119.99819 * 179.97438 * 19 18 17 21 21 C 1.38255 * 120.00028 * 0.02562 * 20 19 18 22 22 C 1.38211 * 120.00021 * 359.95974 * 21 20 19 23 23 C 1.50705 * 119.99631 * 180.02562 * 22 21 20 24 24 C 1.52995 * 117.50123 * 8.62350 * 23 22 21 25 25 C 1.52999 * 117.50049 * 299.99879 * 23 22 21 26 26 C 1.38223 * 120.00188 * 269.73202 * 18 17 15 27 27 C 1.53039 * 109.53871 * 298.63789 * 12 11 10 28 28 H 1.09006 * 109.52367 * 301.39666 * 27 12 11 29 29 O 1.42897 * 109.49818 * 181.31892 * 27 12 11 30 30 C 1.46925 * 120.63289 * 207.68161 * 9 7 2 31 31 H 0.96998 * 120.00601 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58363 * 246.19783 * 10 9 7 33 33 H 1.08997 * 109.59292 * 6.62235 * 10 9 7 34 34 H 1.08992 * 109.49950 * 174.58303 * 11 10 9 35 35 H 1.09000 * 109.49716 * 294.65360 * 11 10 9 36 36 H 0.97004 * 119.99698 * 264.92998 * 14 12 11 37 37 H 1.08995 * 109.47755 * 300.00155 * 17 15 14 38 38 H 1.09010 * 109.46910 * 60.00576 * 17 15 14 39 39 H 1.07993 * 120.00101 * 359.97438 * 19 18 17 40 40 H 1.08000 * 119.99582 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.99575 * 179.97438 * 21 20 19 42 42 H 1.08997 * 115.54472 * 154.33617 * 23 22 21 43 43 H 1.09006 * 117.50097 * 359.97438 * 24 23 22 44 44 H 1.09000 * 117.49858 * 145.02264 * 24 23 22 45 45 H 1.08998 * 117.50310 * 214.98130 * 25 23 22 46 46 H 1.09007 * 117.49813 * 359.97438 * 25 23 22 47 47 H 1.08005 * 119.99642 * 359.97438 * 26 18 17 48 48 H 0.96699 * 113.99903 * 180.16056 * 29 27 12 49 49 H 1.08997 * 109.58240 * 113.79907 * 30 9 7 50 50 H 1.08997 * 109.58559 * 353.37470 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2800 9 7 1.3725 -2.3612 -0.3531 10 6 0.2281 -2.3347 -1.2741 11 6 0.5010 -3.3050 -2.4278 12 6 0.8189 -4.6901 -1.8597 13 1 0.9894 -5.3882 -2.6793 14 7 -0.3090 -5.1557 -1.0489 15 6 -1.3507 -5.7766 -1.6369 16 8 -1.3546 -5.9494 -2.8373 17 6 -2.5106 -6.2560 -0.8027 18 6 -3.5342 -6.9101 -1.6945 19 6 -3.4596 -8.2660 -1.9537 20 6 -4.3988 -8.8660 -2.7713 21 6 -5.4125 -8.1101 -3.3303 22 6 -5.4872 -6.7546 -3.0709 23 6 -6.5926 -5.9308 -3.6798 24 6 -7.7123 -6.6781 -4.4068 25 6 -6.6787 -5.8824 -5.2066 26 6 -4.5510 -6.1554 -2.2489 27 6 2.0745 -4.6101 -0.9884 28 1 2.9088 -4.2405 -1.5847 29 8 2.3881 -5.9096 -0.4834 30 6 1.8194 -3.6547 0.1815 31 1 -0.4851 0.8400 -0.0004 32 1 -0.6741 -2.6411 -0.7447 33 1 0.0987 -1.3265 -1.6675 34 1 -0.3797 -3.3673 -3.0669 35 1 1.3493 -2.9471 -3.0111 36 1 -0.3059 -5.0171 -0.0888 37 1 -2.1554 -6.9773 -0.0668 38 1 -2.9647 -5.4078 -0.2903 39 1 -2.6676 -8.8564 -1.5174 40 1 -4.3408 -9.9253 -2.9734 41 1 -6.1461 -8.5789 -3.9694 42 1 -6.8627 -5.0282 -3.1316 43 1 -7.6493 -7.7656 -4.4452 44 1 -8.7195 -6.2672 -4.3370 45 1 -7.0060 -4.9482 -5.6629 46 1 -5.9356 -6.4461 -5.7707 47 1 -4.6120 -5.0970 -2.0425 48 1 3.1733 -5.9334 0.0806 49 1 1.0470 -4.0686 0.8296 50 1 2.7401 -3.5173 0.7485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090446411.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:37 Heat of formation + Delta-G solvation = -36.210779 kcal Electronic energy + Delta-G solvation = -30266.845788 eV Core-core repulsion = 26259.166180 eV Total energy + Delta-G solvation = -4007.679608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.37581 -40.52280 -39.28555 -37.65393 -36.93877 -35.54829 -33.81435 -33.31415 -31.84232 -31.64748 -30.24803 -28.47391 -27.06735 -24.71615 -24.04839 -23.66882 -23.45610 -22.95484 -22.08166 -20.46517 -20.27643 -18.86139 -18.24876 -17.93685 -17.83059 -16.93978 -16.85393 -16.70496 -16.31520 -15.88292 -15.78437 -15.47342 -15.35085 -14.95013 -14.89723 -14.76622 -14.47205 -14.01123 -13.87300 -13.60592 -13.45828 -13.27221 -13.12272 -13.01297 -12.86003 -12.76931 -12.47610 -12.36249 -12.15341 -12.02258 -11.98712 -11.84297 -11.83534 -11.55587 -11.29071 -11.25343 -11.03383 -10.85388 -10.51784 -9.98534 -9.66995 -9.37803 -8.71287 -7.89535 -5.35084 0.40077 0.48939 1.46145 1.49639 1.58464 1.72069 2.26585 2.49160 2.73890 3.14400 3.18241 3.27022 3.57974 3.66401 3.74361 3.88058 3.97402 4.01389 4.06814 4.08925 4.16392 4.18036 4.23705 4.26209 4.38095 4.41065 4.51208 4.53774 4.62035 4.69412 4.76794 4.79498 4.88032 4.94956 4.96059 5.04827 5.10549 5.14157 5.16102 5.19919 5.24161 5.41182 5.56077 5.57805 5.63501 5.67460 5.69918 5.71473 6.12458 6.35222 6.62128 6.89466 7.11911 7.32044 7.80972 8.31861 9.16639 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013317 B = 0.002628 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.133010 B =10651.923841 C =12165.849217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.047 4.047 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.262 4.262 8 H 0.072 0.928 9 N -0.602 5.602 10 C 0.187 3.813 11 C -0.140 4.140 12 C 0.170 3.830 13 H 0.070 0.930 14 N -0.703 5.703 15 C 0.514 3.486 16 O -0.580 6.580 17 C -0.098 4.098 18 C -0.070 4.070 19 C -0.124 4.124 20 C -0.119 4.119 21 C -0.131 4.131 22 C -0.061 4.061 23 C -0.137 4.137 24 C -0.159 4.159 25 C -0.174 4.174 26 C -0.122 4.122 27 C 0.096 3.904 28 H 0.067 0.933 29 O -0.570 6.570 30 C 0.119 3.881 31 H 0.249 0.751 32 H 0.006 0.994 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.407 0.593 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.395 0.605 49 H 0.029 0.971 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 -16.990 -3.139 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.243 4.243 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.392 4.392 8 H 0.090 0.910 9 N -0.327 5.327 10 C 0.061 3.939 11 C -0.180 4.180 12 C 0.065 3.935 13 H 0.088 0.912 14 N -0.354 5.354 15 C 0.301 3.699 16 O -0.460 6.460 17 C -0.137 4.137 18 C -0.070 4.070 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.061 4.061 23 C -0.155 4.155 24 C -0.196 4.196 25 C -0.211 4.211 26 C -0.140 4.140 27 C 0.035 3.965 28 H 0.085 0.915 29 O -0.377 6.377 30 C -0.007 4.007 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.245 0.755 49 H 0.046 0.954 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.643 -17.148 -4.300 20.138 hybrid contribution 0.906 1.703 0.741 2.066 sum -8.737 -15.445 -3.559 18.099 Atomic orbital electron populations 1.70174 1.06604 1.25762 1.55057 1.25748 0.95971 1.01402 1.01179 0.85271 0.78809 0.80146 0.76575 1.18923 1.22121 1.22041 1.19526 0.93103 0.85729 1.40832 0.91027 1.44186 1.35783 1.01933 1.50771 1.20459 0.88101 0.96973 0.88360 1.22379 1.01107 0.95463 0.99050 1.20627 0.85074 0.94598 0.93237 0.91225 1.45914 1.19353 1.58450 1.11697 1.20984 0.83739 0.76762 0.88383 1.90666 1.80299 1.58363 1.16710 1.20713 0.92258 1.03144 0.97623 1.19418 0.95049 0.94244 0.98307 1.21214 0.99457 0.94152 0.99382 1.21374 0.94472 1.00965 0.96902 1.21254 0.99475 0.93220 1.00906 1.19306 0.95591 0.94145 0.97040 1.21089 0.97881 1.01305 0.95199 1.23158 0.94694 0.99672 1.02066 1.23065 1.02647 1.03170 0.92217 1.20938 0.95232 0.99477 0.98324 1.22327 0.95536 0.83316 0.95343 0.91513 1.86451 1.52148 1.28481 1.70602 1.21674 0.98852 0.86093 0.94102 0.94176 0.97597 0.92944 0.92742 0.91516 0.75652 0.85360 0.86857 0.85089 0.83676 0.84205 0.87011 0.87557 0.86940 0.87625 0.89335 0.86777 0.75484 0.95363 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.15 11.19 21.65 0.24 -52.91 16 2 C -0.05 -2.53 4.91 84.86 0.42 -2.11 16 3 Si 0.96 43.42 29.59 68.60 2.03 45.45 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 7 C -0.26 -13.52 9.59 84.03 0.81 -12.72 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.60 -27.93 3.00 -699.12 -2.09 -30.03 16 10 C 0.19 8.73 5.05 86.36 0.44 9.17 16 11 C -0.14 -5.55 5.77 30.67 0.18 -5.37 16 12 C 0.17 5.96 2.47 45.02 0.11 6.07 16 13 H 0.07 2.60 7.58 -2.39 -0.02 2.58 16 14 N -0.70 -22.61 4.15 -442.40 -1.84 -24.45 16 15 C 0.51 16.77 7.79 87.66 0.68 17.46 16 16 O -0.58 -23.40 15.70 -3.03 -0.05 -23.45 16 17 C -0.10 -2.41 5.83 29.10 0.17 -2.24 16 18 C -0.07 -1.85 4.37 -19.86 -0.09 -1.93 16 19 C -0.12 -2.96 9.70 22.27 0.22 -2.74 16 20 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 21 C -0.13 -2.79 9.30 22.27 0.21 -2.58 16 22 C -0.06 -1.47 5.61 -19.87 -0.11 -1.58 16 23 C -0.14 -2.76 6.04 -11.54 -0.07 -2.83 16 24 C -0.16 -2.36 9.86 30.59 0.30 -2.06 16 25 C -0.17 -3.13 10.16 30.59 0.31 -2.81 16 26 C -0.12 -3.32 9.39 22.27 0.21 -3.11 16 27 C 0.10 3.02 3.36 30.67 0.10 3.13 16 28 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 29 O -0.57 -15.03 13.21 -148.98 -1.97 -17.00 16 30 C 0.12 4.30 5.84 86.36 0.50 4.81 16 31 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.01 0.29 7.74 -2.39 -0.02 0.27 16 33 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 34 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.41 12.16 6.87 -92.71 -0.64 11.53 16 37 H 0.13 2.39 8.09 -2.39 -0.02 2.37 16 38 H 0.11 2.53 8.08 -2.38 -0.02 2.51 16 39 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 41 H 0.14 2.27 6.02 -2.91 -0.02 2.25 16 42 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.11 1.37 6.18 -2.38 -0.01 1.36 16 44 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.11 3.11 8.06 -2.91 -0.02 3.08 16 48 H 0.40 6.82 9.08 -74.06 -0.67 6.15 16 49 H 0.03 1.01 6.64 -2.39 -0.02 1.00 16 50 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 Total: -1.00 -69.10 400.85 0.59 -68.52 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.35 Total: 37.62 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 4.61 Total: -3.75 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.69 Total: -107.38 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -2.02 Total: -40.45 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.10 0.59 -68.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090446411.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.304 kcal (2) G-P(sol) polarization free energy of solvation -69.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds