Wall clock time and date at job start Wed Apr 1 2020 02:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99742 * 2 1 4 4 H 1.48507 * 109.46847 * 269.99471 * 3 2 1 5 5 H 1.48497 * 109.47446 * 29.99504 * 3 2 1 6 6 H 1.48498 * 109.47088 * 150.00029 * 3 2 1 7 7 C 1.38811 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00058 * 191.05195 * 7 2 1 9 9 N 1.36938 * 119.99907 * 11.05393 * 7 2 1 10 10 C 1.46929 * 120.63090 * 211.38342 * 9 7 2 11 11 C 1.53188 * 108.77866 * 233.62797 * 10 9 7 12 12 C 1.53038 * 109.31197 * 305.36850 * 11 10 9 13 13 H 1.09007 * 109.45902 * 301.33926 * 12 11 10 14 14 N 1.46497 * 109.45134 * 181.37935 * 12 11 10 15 15 C 1.34776 * 120.00588 * 84.95825 * 14 12 11 16 16 O 1.21556 * 119.99571 * 0.02562 * 15 14 12 17 17 C 1.47845 * 120.00397 * 180.02562 * 15 14 12 18 18 C 1.39596 * 120.14282 * 331.19732 * 17 15 14 19 19 C 1.37934 * 119.84947 * 179.97438 * 18 17 15 20 20 C 1.38378 * 120.14705 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.29576 * 0.02562 * 20 19 18 22 22 C 1.37983 * 120.14088 * 359.73835 * 21 20 19 23 23 C 1.50694 * 120.07264 * 180.25460 * 22 21 20 24 24 C 1.53783 * 113.61546 * 30.71901 * 23 22 21 25 25 C 1.53961 * 87.01788 * 220.04680 * 24 23 22 26 26 C 1.53780 * 113.61535 * 293.10921 * 23 22 21 27 27 C 1.53039 * 109.54122 * 61.35888 * 12 11 10 28 28 H 1.08998 * 109.49785 * 58.62208 * 27 12 11 29 29 O 1.42906 * 109.49645 * 178.68506 * 27 12 11 30 30 C 1.46932 * 120.63268 * 31.40254 * 9 7 2 31 31 H 0.96995 * 120.00055 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58177 * 353.41788 * 10 9 7 33 33 H 1.09001 * 109.58505 * 113.69559 * 10 9 7 34 34 H 1.08992 * 109.49652 * 185.41316 * 11 10 9 35 35 H 1.09006 * 109.49502 * 65.31093 * 11 10 9 36 36 H 0.97005 * 119.99510 * 264.96627 * 14 12 11 37 37 H 1.08003 * 120.07534 * 359.95129 * 18 17 15 38 38 H 1.08004 * 119.92374 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.85604 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.93165 * 180.02562 * 21 20 19 41 41 H 1.09002 * 112.84809 * 161.91463 * 23 22 21 42 42 H 1.08997 * 113.61192 * 334.56335 * 24 23 22 43 43 H 1.08998 * 113.61311 * 105.46884 * 24 23 22 44 44 H 1.08997 * 113.53189 * 270.80732 * 25 24 23 45 45 H 1.08993 * 113.74309 * 139.94656 * 25 24 23 46 46 H 1.09004 * 113.61523 * 254.52580 * 26 23 22 47 47 H 1.08999 * 113.61587 * 25.34759 * 26 23 22 48 48 H 0.96701 * 113.99788 * 180.02562 * 29 27 12 49 49 H 1.09001 * 109.58507 * 6.58395 * 30 9 7 50 50 H 1.09004 * 109.70302 * 246.23012 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0753 -1.2107 0.1798 9 7 1.3447 -2.3771 -0.2263 10 6 1.7976 -3.6269 0.3996 11 6 1.9940 -4.6826 -0.6929 12 6 0.7034 -4.8176 -1.5043 13 1 -0.1148 -5.0985 -0.8410 14 7 0.8772 -5.8499 -2.5291 15 6 0.6685 -7.1457 -2.2226 16 8 0.3358 -7.4577 -1.0959 17 6 0.8444 -8.1876 -3.2567 18 6 0.6303 -7.8830 -4.6022 19 6 0.7966 -8.8596 -5.5620 20 6 1.1754 -10.1386 -5.1938 21 6 1.3892 -10.4470 -3.8623 22 6 1.2310 -9.4781 -2.8926 23 6 1.4699 -9.8143 -1.4432 24 6 2.5313 -10.9067 -1.2310 25 6 1.6201 -11.4640 -0.1222 26 6 0.4455 -10.8039 -0.8634 27 6 0.3792 -3.4814 -2.1763 28 1 1.2075 -3.1881 -2.8212 29 8 -0.8093 -3.6168 -2.9582 30 6 0.1643 -2.4122 -1.1006 31 1 -0.4850 0.8400 -0.0004 32 1 2.7419 -3.4555 0.9162 33 1 1.0482 -3.9709 1.1125 34 1 2.2369 -5.6407 -0.2336 35 1 2.8074 -4.3776 -1.3515 36 1 1.1425 -5.6008 -3.4283 37 1 0.3347 -6.8852 -4.8908 38 1 0.6309 -8.6254 -6.6032 39 1 1.3047 -10.8995 -5.9493 40 1 1.6851 -11.4470 -3.5816 41 1 1.6227 -8.9308 -0.8234 42 1 2.6434 -11.5779 -2.0825 43 1 3.4838 -10.5245 -0.8638 44 1 1.8151 -11.0321 0.8594 45 1 1.5679 -12.5525 -0.1029 46 1 -0.2835 -10.3388 -0.1997 47 1 -0.0149 -11.4459 -1.6144 48 1 -1.0746 -2.8064 -3.4141 49 1 0.0311 -1.4393 -1.5738 50 1 -0.7208 -2.6572 -0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090769902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:57 Heat of formation + Delta-G solvation = -19.841202 kcal Electronic energy + Delta-G solvation = -30768.910222 eV Core-core repulsion = 26761.940453 eV Total energy + Delta-G solvation = -4006.969770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.69606 -39.18239 -37.90846 -37.53067 -35.26876 -34.35058 -32.36801 -31.41275 -31.15768 -29.34013 -28.81287 -25.87311 -25.69195 -25.09393 -23.73705 -22.48506 -22.13104 -21.45219 -20.28445 -19.50061 -19.19925 -17.88830 -16.89771 -16.60281 -16.43587 -15.98191 -15.62134 -15.09387 -14.91536 -14.75639 -14.43753 -14.30146 -13.92700 -13.74244 -13.47722 -13.34584 -13.07291 -12.77359 -12.59461 -12.48219 -12.19845 -12.05673 -11.96683 -11.86717 -11.66587 -11.56392 -11.17699 -10.87374 -10.80189 -10.70997 -10.51308 -10.40575 -10.30628 -10.19379 -10.06222 -9.74818 -9.48912 -9.29634 -9.12626 -8.86390 -8.68832 -8.53397 -6.73805 -5.87740 -3.37031 0.82415 1.17159 2.92483 3.30868 3.37130 3.38887 3.40217 3.68533 4.39244 4.46061 4.51764 4.56697 4.65472 4.74210 4.75634 4.85244 4.94805 5.01887 5.20404 5.28376 5.32030 5.39434 5.45474 5.57493 5.60010 5.60219 5.68331 5.73436 5.78657 5.87821 5.91533 6.00424 6.01098 6.05068 6.10122 6.14440 6.22878 6.25733 6.31952 6.44074 6.46769 6.61351 6.70290 6.72292 6.86009 6.91496 7.12801 7.47706 7.70282 7.75405 8.09407 8.37575 8.42871 9.11355 9.72107 10.30030 11.20310 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002631 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584332 B =10640.229047 C =11532.088451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.089 0.911 14 N -0.709 5.709 15 C 0.555 3.445 16 O -0.532 6.532 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.015 4.015 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.122 4.122 27 C 0.071 3.929 28 H 0.051 0.949 29 O -0.573 6.573 30 C 0.150 3.850 31 H 0.256 0.744 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.376 0.624 49 H 0.094 0.906 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 -20.277 -10.457 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.194 4.194 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.059 3.941 13 H 0.107 0.893 14 N -0.358 5.358 15 C 0.342 3.658 16 O -0.411 6.411 17 C -0.129 4.129 18 C -0.104 4.104 19 C -0.151 4.151 20 C -0.117 4.117 21 C -0.147 4.147 22 C -0.016 4.016 23 C -0.099 4.099 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.160 4.160 27 C 0.010 3.990 28 H 0.069 0.931 29 O -0.378 6.378 30 C 0.023 3.977 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.230 0.770 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.222 0.778 49 H 0.112 0.888 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.503 -20.929 -9.382 23.071 hybrid contribution 0.445 1.677 -0.843 1.929 sum 2.948 -19.252 -10.224 21.997 Atomic orbital electron populations 1.69970 1.05263 1.25688 1.53867 1.25207 0.95448 0.98552 1.00215 0.86229 0.79097 0.83358 0.77692 1.21389 1.21605 1.20315 1.19204 0.91059 0.83750 1.44563 0.91500 1.43964 1.32193 1.03829 1.51320 1.20947 0.98329 0.86386 0.92510 1.22411 0.96340 1.00069 0.99071 1.21009 0.98667 0.85253 0.89188 0.89325 1.46065 1.69118 1.05937 1.14659 1.18246 0.77420 0.82519 0.87649 1.90726 1.46998 1.81553 1.21817 1.19946 1.04971 0.94435 0.93583 1.21368 0.97533 0.99798 0.91692 1.21070 1.01220 0.93366 0.99479 1.21288 0.97695 0.96645 0.96056 1.21000 1.01879 0.99332 0.92499 1.19833 0.94545 0.91389 0.95789 1.21878 0.96945 0.98998 0.92108 1.23147 0.97652 0.97994 0.98990 1.22827 0.96825 0.99920 0.98243 1.22836 0.96537 0.97138 0.99466 1.23003 0.86208 0.95799 0.93940 0.93131 1.86414 1.45375 1.39267 1.66729 1.21414 0.89463 0.96817 0.90041 0.93437 0.92147 0.95814 0.91843 0.92068 0.76981 0.85354 0.85619 0.85837 0.85468 0.86058 0.90081 0.91405 0.90053 0.91630 0.90874 0.90549 0.77757 0.88794 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.42 11.08 55.49 0.61 -24.80 16 2 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 3 Si 0.91 21.05 29.57 -169.99 -5.03 16.03 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 N -0.59 -14.35 2.98 -172.32 -0.51 -14.87 16 10 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 11 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.79 16 13 H 0.09 1.85 7.58 -51.92 -0.39 1.46 16 14 N -0.71 -10.87 4.83 -54.71 -0.26 -11.13 16 15 C 0.55 8.84 7.20 -12.33 -0.09 8.75 16 16 O -0.53 -9.97 13.70 5.32 0.07 -9.90 16 17 C -0.13 -1.68 5.83 -104.97 -0.61 -2.29 16 18 C -0.09 -0.94 9.35 -39.19 -0.37 -1.30 16 19 C -0.13 -1.22 10.03 -39.64 -0.40 -1.61 16 20 C -0.10 -0.85 10.04 -39.49 -0.40 -1.25 16 21 C -0.13 -1.26 8.96 -39.64 -0.36 -1.61 16 22 C -0.01 -0.18 5.30 -104.23 -0.55 -0.73 16 23 C -0.08 -0.99 3.10 -90.96 -0.28 -1.27 16 24 C -0.14 -1.35 7.45 -25.82 -0.19 -1.54 16 25 C -0.14 -1.31 8.09 -25.82 -0.21 -1.52 16 26 C -0.12 -1.35 7.58 -25.92 -0.20 -1.55 16 27 C 0.07 1.32 3.14 -26.61 -0.08 1.24 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -9.70 13.16 -35.23 -0.46 -10.16 16 30 C 0.15 3.44 4.88 -3.71 -0.02 3.42 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 5.21 7.43 -40.82 -0.30 4.91 16 37 H 0.13 1.26 7.27 -52.48 -0.38 0.88 16 38 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 39 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.13 0.99 6.26 -52.49 -0.33 0.66 16 41 H 0.12 1.81 5.63 -51.93 -0.29 1.52 16 42 H 0.08 0.66 6.01 -51.93 -0.31 0.35 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 48 H 0.38 5.08 9.08 45.56 0.41 5.49 16 49 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 50 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -31.01 393.29 -10.89 -41.91 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -6.94 Total: 12.00 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -4.30 Total: -5.01 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.16 Total: -50.80 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.39 Total: -20.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.01 -10.89 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090769902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.065 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds