Wall clock time and date at job start Wed Apr 1 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99742 * 2 1 4 4 H 1.48507 * 109.46847 * 269.99471 * 3 2 1 5 5 H 1.48497 * 109.47446 * 29.99504 * 3 2 1 6 6 H 1.48498 * 109.47088 * 150.00029 * 3 2 1 7 7 C 1.38811 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00058 * 191.05195 * 7 2 1 9 9 N 1.36938 * 119.99907 * 11.05393 * 7 2 1 10 10 C 1.46929 * 120.63090 * 211.38342 * 9 7 2 11 11 C 1.53188 * 108.77866 * 233.62797 * 10 9 7 12 12 C 1.53038 * 109.31197 * 305.36850 * 11 10 9 13 13 H 1.09007 * 109.45902 * 301.33926 * 12 11 10 14 14 N 1.46497 * 109.45134 * 181.37935 * 12 11 10 15 15 C 1.34776 * 120.00588 * 84.95825 * 14 12 11 16 16 O 1.21556 * 119.99571 * 0.02562 * 15 14 12 17 17 C 1.47845 * 120.00397 * 180.02562 * 15 14 12 18 18 C 1.39596 * 120.14282 * 331.19732 * 17 15 14 19 19 C 1.37934 * 119.84947 * 179.97438 * 18 17 15 20 20 C 1.38378 * 120.14705 * 359.97438 * 19 18 17 21 21 C 1.38339 * 120.29576 * 0.02562 * 20 19 18 22 22 C 1.37983 * 120.14088 * 359.73835 * 21 20 19 23 23 C 1.50694 * 120.07264 * 180.25460 * 22 21 20 24 24 C 1.53783 * 113.61546 * 30.71901 * 23 22 21 25 25 C 1.53961 * 87.01788 * 220.04680 * 24 23 22 26 26 C 1.53780 * 113.61535 * 293.10921 * 23 22 21 27 27 C 1.53039 * 109.54122 * 61.35888 * 12 11 10 28 28 H 1.08998 * 109.49785 * 58.62208 * 27 12 11 29 29 O 1.42906 * 109.49645 * 178.68506 * 27 12 11 30 30 C 1.46932 * 120.63268 * 31.40254 * 9 7 2 31 31 H 0.96995 * 120.00055 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58177 * 353.41788 * 10 9 7 33 33 H 1.09001 * 109.58505 * 113.69559 * 10 9 7 34 34 H 1.08992 * 109.49652 * 185.41316 * 11 10 9 35 35 H 1.09006 * 109.49502 * 65.31093 * 11 10 9 36 36 H 0.97005 * 119.99510 * 264.96627 * 14 12 11 37 37 H 1.08003 * 120.07534 * 359.95129 * 18 17 15 38 38 H 1.08004 * 119.92374 * 179.97438 * 19 18 17 39 39 H 1.08005 * 119.85604 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.93165 * 180.02562 * 21 20 19 41 41 H 1.09002 * 112.84809 * 161.91463 * 23 22 21 42 42 H 1.08997 * 113.61192 * 334.56335 * 24 23 22 43 43 H 1.08998 * 113.61311 * 105.46884 * 24 23 22 44 44 H 1.08997 * 113.53189 * 270.80732 * 25 24 23 45 45 H 1.08993 * 113.74309 * 139.94656 * 25 24 23 46 46 H 1.09004 * 113.61523 * 254.52580 * 26 23 22 47 47 H 1.08999 * 113.61587 * 25.34759 * 26 23 22 48 48 H 0.96701 * 113.99788 * 180.02562 * 29 27 12 49 49 H 1.09001 * 109.58507 * 6.58395 * 30 9 7 50 50 H 1.09004 * 109.70302 * 246.23012 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0753 -1.2107 0.1798 9 7 1.3447 -2.3771 -0.2263 10 6 1.7976 -3.6269 0.3996 11 6 1.9940 -4.6826 -0.6929 12 6 0.7034 -4.8176 -1.5043 13 1 -0.1148 -5.0985 -0.8410 14 7 0.8772 -5.8499 -2.5291 15 6 0.6685 -7.1457 -2.2226 16 8 0.3358 -7.4577 -1.0959 17 6 0.8444 -8.1876 -3.2567 18 6 0.6303 -7.8830 -4.6022 19 6 0.7966 -8.8596 -5.5620 20 6 1.1754 -10.1386 -5.1938 21 6 1.3892 -10.4470 -3.8623 22 6 1.2310 -9.4781 -2.8926 23 6 1.4699 -9.8143 -1.4432 24 6 2.5313 -10.9067 -1.2310 25 6 1.6201 -11.4640 -0.1222 26 6 0.4455 -10.8039 -0.8634 27 6 0.3792 -3.4814 -2.1763 28 1 1.2075 -3.1881 -2.8212 29 8 -0.8093 -3.6168 -2.9582 30 6 0.1643 -2.4122 -1.1006 31 1 -0.4850 0.8400 -0.0004 32 1 2.7419 -3.4555 0.9162 33 1 1.0482 -3.9709 1.1125 34 1 2.2369 -5.6407 -0.2336 35 1 2.8074 -4.3776 -1.3515 36 1 1.1425 -5.6008 -3.4283 37 1 0.3347 -6.8852 -4.8908 38 1 0.6309 -8.6254 -6.6032 39 1 1.3047 -10.8995 -5.9493 40 1 1.6851 -11.4470 -3.5816 41 1 1.6227 -8.9308 -0.8234 42 1 2.6434 -11.5779 -2.0825 43 1 3.4838 -10.5245 -0.8638 44 1 1.8151 -11.0321 0.8594 45 1 1.5679 -12.5525 -0.1029 46 1 -0.2835 -10.3388 -0.1997 47 1 -0.0149 -11.4459 -1.6144 48 1 -1.0746 -2.8064 -3.4141 49 1 0.0311 -1.4393 -1.5738 50 1 -0.7208 -2.6572 -0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090769902.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:56 Heat of formation + Delta-G solvation = -39.548128 kcal Electronic energy + Delta-G solvation = -30769.764779 eV Core-core repulsion = 26761.940453 eV Total energy + Delta-G solvation = -4007.824326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71940 -40.42188 -39.18583 -38.49810 -36.91198 -35.84582 -34.05452 -32.44248 -32.04410 -30.97316 -30.45499 -27.26041 -26.49941 -26.35657 -24.86879 -23.98093 -23.52594 -22.59495 -21.52923 -21.06153 -20.03497 -19.18489 -18.51856 -18.13757 -17.53053 -17.18789 -16.71754 -16.59831 -16.00788 -15.90979 -15.60989 -15.39589 -15.31529 -15.23640 -15.04635 -14.54409 -14.35006 -14.04830 -13.86568 -13.56134 -13.45460 -13.37005 -13.30923 -13.00942 -12.81383 -12.70309 -12.69104 -12.54923 -12.30463 -12.10033 -12.02797 -11.91856 -11.60500 -11.37418 -11.32724 -11.12861 -10.99776 -10.65084 -10.62027 -10.11480 -9.86515 -9.59630 -8.73361 -7.91783 -5.45150 -0.03088 0.41760 1.47723 1.48657 1.58058 1.83556 2.12675 2.47565 2.82852 3.09095 3.26396 3.61151 3.63617 3.70843 3.75842 3.86980 3.89855 4.00700 4.03585 4.11165 4.19684 4.23299 4.28360 4.38735 4.42645 4.47445 4.53813 4.67557 4.81026 4.81949 4.85865 4.87772 4.91834 4.94621 5.01154 5.05671 5.12171 5.13584 5.14144 5.24289 5.30011 5.40975 5.44509 5.53509 5.53707 5.56708 5.61404 5.74246 5.99626 6.33922 6.54124 6.80509 7.09239 7.21379 7.74467 8.29363 9.14474 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002631 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.584332 B =10640.229047 C =11532.088451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.072 0.928 9 N -0.604 5.604 10 C 0.143 3.857 11 C -0.122 4.122 12 C 0.172 3.828 13 H 0.055 0.945 14 N -0.700 5.700 15 C 0.551 3.449 16 O -0.570 6.570 17 C -0.155 4.155 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.029 4.029 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.134 4.134 26 C -0.124 4.124 27 C 0.093 3.907 28 H 0.065 0.935 29 O -0.573 6.573 30 C 0.159 3.841 31 H 0.252 0.748 32 H 0.067 0.933 33 H 0.008 0.992 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.409 0.591 37 H 0.135 0.865 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.392 0.608 49 H 0.072 0.928 50 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -22.357 -13.411 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.801 3.199 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.162 4.162 12 C 0.066 3.934 13 H 0.073 0.927 14 N -0.350 5.350 15 C 0.340 3.660 16 O -0.451 6.451 17 C -0.158 4.158 18 C -0.109 4.109 19 C -0.150 4.150 20 C -0.105 4.105 21 C -0.148 4.148 22 C -0.030 4.030 23 C -0.111 4.111 24 C -0.166 4.166 25 C -0.171 4.171 26 C -0.162 4.162 27 C 0.031 3.969 28 H 0.083 0.917 29 O -0.380 6.380 30 C 0.032 3.968 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.246 0.754 37 H 0.153 0.847 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.109 0.891 48 H 0.242 0.758 49 H 0.090 0.910 50 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 4.165 -23.022 -12.372 26.465 hybrid contribution -0.129 2.263 0.071 2.268 sum 4.036 -20.758 -12.301 24.464 Atomic orbital electron populations 1.70142 1.06721 1.26104 1.55149 1.25974 0.96187 1.01710 1.00315 0.85186 0.77935 0.79027 0.77773 1.20647 1.22295 1.19349 1.19543 0.91496 0.84677 1.44012 0.91078 1.44204 1.32221 1.04347 1.52146 1.21024 0.97946 0.86063 0.93266 1.22192 0.96646 0.99106 0.98226 1.20651 0.97474 0.85815 0.89411 0.92711 1.45836 1.69204 1.05362 1.14585 1.18798 0.76331 0.82928 0.87898 1.90711 1.48589 1.82084 1.23679 1.19829 1.08041 0.94168 0.93742 1.21522 0.97482 1.00889 0.91014 1.21443 1.00019 0.93074 1.00416 1.21744 0.95329 0.97191 0.96274 1.21267 1.01330 0.99648 0.92528 1.19976 0.95233 0.91660 0.96145 1.21783 0.98717 0.98431 0.92135 1.23135 0.96747 0.97059 0.99665 1.22794 0.95583 1.01076 0.97675 1.22861 0.96414 0.97254 0.99634 1.22564 0.87182 0.94381 0.92724 0.91676 1.86396 1.44754 1.40485 1.66389 1.21203 0.87954 0.97154 0.90465 0.93868 0.91488 0.97396 0.91333 0.90843 0.75433 0.84716 0.82734 0.82301 0.83187 0.89773 0.87774 0.91583 0.90957 0.89373 0.93498 0.89113 0.75837 0.90967 0.98794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.18 11.08 21.65 0.24 -53.94 16 2 C -0.05 -2.51 5.04 84.86 0.43 -2.08 16 3 Si 0.97 43.56 29.57 68.60 2.03 45.59 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 7 C -0.27 -14.37 9.58 84.03 0.80 -13.57 16 8 H 0.07 3.70 7.85 -2.91 -0.02 3.67 16 9 N -0.60 -30.28 2.98 -699.09 -2.09 -32.37 16 10 C 0.14 6.21 6.52 86.36 0.56 6.78 16 11 C -0.12 -4.46 5.65 30.67 0.17 -4.28 16 12 C 0.17 6.37 2.12 45.02 0.10 6.47 16 13 H 0.05 2.43 7.58 -2.38 -0.02 2.41 16 14 N -0.70 -21.61 4.83 -445.28 -2.15 -23.76 16 15 C 0.55 18.11 7.20 86.79 0.62 18.74 16 16 O -0.57 -22.74 13.70 -3.89 -0.05 -22.79 16 17 C -0.15 -4.04 5.83 -20.09 -0.12 -4.16 16 18 C -0.09 -1.81 9.35 22.53 0.21 -1.60 16 19 C -0.13 -1.91 10.03 22.23 0.22 -1.68 16 20 C -0.09 -1.12 10.04 22.33 0.22 -0.90 16 21 C -0.13 -2.11 8.96 22.23 0.20 -1.91 16 22 C -0.03 -0.68 5.30 -19.61 -0.10 -0.78 16 23 C -0.09 -2.27 3.10 -11.02 -0.03 -2.31 16 24 C -0.13 -2.27 7.45 31.18 0.23 -2.04 16 25 C -0.13 -2.37 8.09 31.18 0.25 -2.12 16 26 C -0.12 -2.75 7.58 31.12 0.24 -2.52 16 27 C 0.09 3.46 3.14 30.67 0.10 3.56 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 O -0.57 -19.31 13.16 -148.98 -1.96 -21.27 16 30 C 0.16 7.61 4.88 86.36 0.42 8.03 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.41 10.41 7.43 -92.70 -0.69 9.72 16 37 H 0.14 2.41 7.27 -2.91 -0.02 2.38 16 38 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.15 1.68 6.26 -2.91 -0.02 1.66 16 41 H 0.08 2.71 5.63 -2.39 -0.01 2.69 16 42 H 0.10 1.34 6.01 -2.39 -0.01 1.33 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.09 1.71 7.95 -2.39 -0.02 1.69 16 48 H 0.39 10.37 9.08 -74.06 -0.67 9.70 16 49 H 0.07 3.76 6.12 -2.39 -0.01 3.74 16 50 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: -1.00 -70.61 393.29 0.15 -70.46 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.39 Total: 34.46 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.53 Total: 3.62 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -4.00 Total: -110.07 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -2.01 Total: -44.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.61 0.15 -70.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090769902.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.912 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds