Wall clock time and date at job start Wed Apr 1 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00148 * 2 1 4 4 H 1.48508 * 109.46943 * 274.80118 * 3 2 1 5 5 H 1.48498 * 109.46995 * 34.80139 * 3 2 1 6 6 H 1.48493 * 109.47191 * 154.80401 * 3 2 1 7 7 C 1.38820 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99867 * 187.46526 * 7 2 1 9 9 N 1.36939 * 119.99870 * 7.45800 * 7 2 1 10 10 C 1.47065 * 136.05604 * 6.54068 * 9 7 2 11 11 C 1.53500 * 87.98321 * 153.13380 * 10 9 7 12 12 O 1.42895 * 114.20441 * 272.47359 * 11 10 9 13 13 C 1.42896 * 114.00441 * 243.59861 * 12 11 10 14 14 C 1.53039 * 109.46268 * 270.03485 * 13 12 11 15 15 C 1.53192 * 109.31222 * 178.60166 * 14 13 12 16 16 N 1.46920 * 108.76944 * 54.65315 * 15 14 13 17 17 C 1.34768 * 120.63416 * 126.36202 * 16 15 14 18 18 O 1.21284 * 120.00134 * 180.02562 * 17 16 15 19 19 C 1.50702 * 120.00046 * 0.02562 * 17 16 15 20 20 C 1.50698 * 109.47487 * 180.02562 * 19 17 16 21 21 C 1.38236 * 119.99739 * 269.72747 * 20 19 17 22 22 C 1.38245 * 119.99874 * 179.76396 * 21 20 19 23 23 C 1.38237 * 119.99374 * 0.50374 * 22 21 20 24 24 C 1.38234 * 120.00481 * 359.75115 * 23 22 21 25 25 C 1.38233 * 120.00159 * 89.99260 * 20 19 17 26 26 C 1.46927 * 118.73515 * 306.38194 * 16 15 14 27 27 C 1.53040 * 109.46291 * 149.97314 * 13 12 11 28 28 C 1.47058 * 136.05576 * 186.90334 * 9 7 2 29 29 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 30 30 H 1.09003 * 113.46183 * 267.91111 * 10 9 7 31 31 H 1.08992 * 113.47023 * 38.35400 * 10 9 7 32 32 H 1.09005 * 114.38333 * 139.66162 * 11 10 9 33 33 H 1.09005 * 109.46024 * 30.00258 * 13 12 11 34 34 H 1.09008 * 109.49604 * 298.56363 * 14 13 12 35 35 H 1.09000 * 109.50214 * 58.65411 * 14 13 12 36 36 H 1.08999 * 109.59377 * 294.85862 * 15 14 13 37 37 H 1.09003 * 109.69904 * 174.50373 * 15 14 13 38 38 H 1.09000 * 109.47134 * 300.00242 * 19 17 16 39 39 H 1.08999 * 109.47252 * 59.99587 * 19 17 16 40 40 H 1.07993 * 120.00369 * 359.97438 * 21 20 19 41 41 H 1.07995 * 120.00051 * 180.23029 * 22 21 20 42 42 H 1.08004 * 119.99426 * 179.72184 * 23 22 21 43 43 H 1.08000 * 120.00142 * 179.97438 * 24 23 22 44 44 H 1.07994 * 120.00069 * 0.02562 * 25 20 19 45 45 H 1.09002 * 109.58880 * 293.82266 * 26 16 15 46 46 H 1.09003 * 109.70389 * 173.46360 * 26 16 15 47 47 H 1.08994 * 109.49839 * 301.34218 * 27 13 12 48 48 H 1.09004 * 109.49154 * 61.43496 * 27 13 12 49 49 H 1.09000 * 113.47406 * 321.64878 * 28 9 7 50 50 H 1.09005 * 113.46688 * 92.02731 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3963 2.1050 -1.3952 5 1 1.5022 2.6212 0.7991 6 1 3.5948 1.4130 0.5960 7 6 2.0103 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1210 9 7 1.3343 -2.3830 -0.1550 10 6 -0.0498 -2.7794 -0.4553 11 6 0.5093 -4.0773 -1.0546 12 8 0.8628 -3.9802 -2.4357 13 6 0.0922 -4.8240 -3.2937 14 6 0.7827 -6.1833 -3.4263 15 6 -0.0638 -7.0967 -4.3184 16 7 -0.3059 -6.4158 -5.5976 17 6 -0.0036 -7.0186 -6.7644 18 8 -0.2078 -6.4457 -7.8137 19 6 0.5881 -8.4046 -6.7654 20 6 0.8319 -8.8459 -8.1855 21 6 -0.1546 -9.5229 -8.8778 22 6 0.0671 -9.9235 -10.1823 23 6 1.2792 -9.6560 -10.7907 24 6 2.2676 -8.9836 -10.0966 25 6 2.0439 -8.5784 -8.7941 26 6 -0.8834 -5.0648 -5.5805 27 6 -0.0278 -4.1743 -4.6741 28 6 1.6714 -3.8129 -0.0873 29 1 -0.4849 0.8400 0.0004 30 1 -0.6583 -2.9391 0.4349 31 1 -0.5359 -2.1366 -1.1891 32 1 -0.0731 -4.9685 -0.8204 33 1 -0.9024 -4.9619 -2.8695 34 1 1.7677 -6.0489 -3.8735 35 1 0.8891 -6.6351 -2.4401 36 1 -1.0155 -7.3052 -3.8296 37 1 0.4678 -8.0314 -4.4969 38 1 1.5322 -8.3970 -6.2205 39 1 -0.1038 -9.0954 -6.2835 40 1 -1.0998 -9.7360 -8.4009 41 1 -0.7049 -10.4492 -10.7244 42 1 1.4541 -9.9729 -11.8083 43 1 3.2148 -8.7750 -10.5719 44 1 2.8163 -8.0536 -8.2516 45 1 -1.9019 -5.1077 -5.1947 46 1 -0.8923 -4.6562 -6.5910 47 1 -0.4985 -3.1961 -4.5761 48 1 0.9649 -4.0589 -5.1094 49 1 2.6488 -4.0489 -0.5082 50 1 1.5223 -4.2477 0.9011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093545954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:49 Heat of formation + Delta-G solvation = 9.393484 kcal Electronic energy + Delta-G solvation = -29561.586538 eV Core-core repulsion = 25555.884479 eV Total energy + Delta-G solvation = -4005.702058 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.61460 -39.35572 -38.69512 -37.34965 -35.34957 -33.36647 -32.17887 -31.49550 -31.19105 -31.13184 -28.01831 -27.48346 -24.81960 -24.58853 -23.56797 -22.98924 -22.83679 -21.99813 -20.79148 -19.49727 -19.09352 -17.57733 -17.08192 -16.82905 -16.10417 -15.99711 -15.98884 -15.29083 -14.99403 -14.95190 -14.51720 -14.43507 -13.96934 -13.82959 -13.69081 -13.58896 -13.45212 -13.30946 -12.87547 -12.69293 -12.60527 -12.40582 -12.16573 -12.02930 -11.78783 -11.45545 -11.30684 -11.25841 -11.17488 -11.01431 -10.81173 -10.53719 -10.34434 -10.25704 -9.99982 -9.79727 -9.40373 -9.14255 -8.96351 -8.88175 -8.75486 -8.67443 -6.83313 -5.73497 -3.02805 1.07628 1.18073 2.43125 2.76563 3.42983 3.47614 3.49480 3.55514 3.93687 4.30571 4.37557 4.50438 4.52848 4.58225 4.75209 4.81805 4.85246 4.88441 4.93393 5.09007 5.11667 5.12540 5.25338 5.26532 5.34259 5.38153 5.42019 5.42540 5.49355 5.50872 5.67189 5.72368 5.78773 5.79752 5.84076 5.91784 6.09738 6.20015 6.25268 6.26878 6.32482 6.38957 6.40739 6.57498 6.58077 6.75060 7.01249 7.17575 7.19890 7.55995 7.93012 7.98145 8.03792 9.08405 9.75303 10.69572 11.45714 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.001886 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.557592 B =14841.151497 C =15169.496488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.212 4.212 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.144 3.856 11 C 0.031 3.969 12 O -0.340 6.340 13 C 0.090 3.910 14 C -0.158 4.158 15 C 0.109 3.891 16 N -0.613 5.613 17 C 0.517 3.483 18 O -0.533 6.533 19 C -0.103 4.103 20 C -0.065 4.065 21 C -0.106 4.106 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.119 4.119 25 C -0.105 4.105 26 C 0.115 3.885 27 C -0.131 4.131 28 C 0.112 3.888 29 H 0.253 0.747 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.045 0.955 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -23.972 -15.436 28.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.339 4.339 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.017 3.983 11 C -0.028 4.028 12 O -0.258 6.258 13 C 0.032 3.968 14 C -0.196 4.196 15 C -0.014 4.014 16 N -0.348 5.348 17 C 0.305 3.695 18 O -0.409 6.409 19 C -0.143 4.143 20 C -0.066 4.066 21 C -0.124 4.124 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.123 4.123 26 C -0.007 4.007 27 C -0.169 4.169 28 C -0.014 4.014 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.577 -23.158 -16.030 28.208 hybrid contribution 0.230 0.837 0.447 0.976 sum -1.347 -22.321 -15.583 27.255 Atomic orbital electron populations 1.69853 1.05038 1.25255 1.56670 1.24798 0.95661 0.97572 1.02529 0.86100 0.78604 0.83507 0.77557 1.21568 1.21786 1.20601 1.18918 0.90472 0.81646 1.42905 0.90200 1.45473 1.06008 0.99162 1.82031 1.22454 0.89058 0.90426 0.96328 1.23963 0.98893 0.98154 0.81820 1.88047 1.58859 1.62874 1.15989 1.21996 0.94260 0.89353 0.91229 1.22492 1.00351 0.96493 1.00275 1.21777 1.00256 0.95660 0.83724 1.48193 1.63267 1.17368 1.05933 1.20499 0.77995 0.87727 0.83272 1.90724 1.53201 1.66075 1.30910 1.20728 1.03233 0.94651 0.95657 1.19290 0.94442 0.98164 0.94674 1.20971 0.98274 0.98337 0.94822 1.21099 0.97317 1.00394 0.95009 1.21146 0.93852 0.99217 0.99796 1.21114 0.99342 0.98645 0.94612 1.21004 0.96808 0.99127 0.95345 1.21615 0.96164 0.81090 1.01793 1.21968 1.01597 0.99484 0.93865 1.22657 0.96535 0.87410 0.94809 0.93760 0.94615 0.91790 0.91948 0.92201 0.90638 0.90213 0.90950 0.89529 0.87807 0.87931 0.86312 0.86131 0.86219 0.86068 0.86199 0.91257 0.88569 0.89508 0.90779 0.93628 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.05 11.86 55.49 0.66 -27.39 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.76 29.56 -169.99 -5.02 17.74 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.21 -6.16 10.73 -15.06 -0.16 -6.32 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 N -0.60 -15.93 3.76 -184.81 -0.70 -16.62 16 10 C 0.14 3.41 7.05 -8.51 -0.06 3.35 16 11 C 0.03 0.57 4.50 -26.22 -0.12 0.45 16 12 O -0.34 -6.31 10.04 -35.23 -0.35 -6.67 16 13 C 0.09 1.21 2.46 -26.69 -0.07 1.14 16 14 C -0.16 -1.60 5.69 -26.61 -0.15 -1.75 16 15 C 0.11 0.83 6.34 -3.71 -0.02 0.81 16 16 N -0.61 -6.24 2.97 -172.77 -0.51 -6.75 16 17 C 0.52 5.81 7.69 -10.99 -0.08 5.73 16 18 O -0.53 -8.15 15.45 5.55 0.09 -8.07 16 19 C -0.10 -0.81 4.18 -29.04 -0.12 -0.93 16 20 C -0.07 -0.62 4.37 -104.63 -0.46 -1.08 16 21 C -0.11 -0.96 9.70 -39.58 -0.38 -1.34 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 26 C 0.12 1.29 6.43 -3.71 -0.02 1.27 16 27 C -0.13 -1.71 5.73 -26.61 -0.15 -1.86 16 28 C 0.11 2.34 8.52 -8.52 -0.07 2.26 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.70 7.63 -51.93 -0.40 1.30 16 32 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 33 H 0.06 0.75 7.71 -51.93 -0.40 0.35 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.45 5.93 -51.93 -0.31 0.15 16 38 H 0.10 0.64 7.64 -51.93 -0.40 0.24 16 39 H 0.10 0.56 7.88 -51.93 -0.41 0.15 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.10 1.20 7.01 -51.93 -0.36 0.83 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 48 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -36.23 404.98 -11.43 -47.66 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.14 Total: -1.72 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -3.55 Total: -4.28 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.55 Total: -50.77 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.27 Total: -14.73 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.23 -11.43 -47.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093545954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.054 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds