Wall clock time and date at job start Wed Apr 1 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99834 * 2 1 4 4 H 1.48500 * 109.46719 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.47065 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.46950 * 149.99796 * 3 2 1 7 7 C 1.38814 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99656 * 162.43845 * 7 2 1 9 9 N 1.36930 * 120.00413 * 342.43765 * 7 2 1 10 10 C 1.46928 * 120.63005 * 333.05865 * 9 7 2 11 11 C 1.53188 * 108.77796 * 233.62518 * 10 9 7 12 12 C 1.53039 * 109.31154 * 305.36647 * 11 10 9 13 13 H 1.08988 * 109.46409 * 301.35474 * 12 11 10 14 14 N 1.46504 * 109.45959 * 181.37831 * 12 11 10 15 15 C 1.34781 * 119.99574 * 84.97221 * 14 12 11 16 16 O 1.21280 * 119.99882 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 12 18 18 C 1.52994 * 109.47201 * 174.22189 * 17 15 14 19 19 C 1.50697 * 115.55231 * 294.78157 * 18 17 15 20 20 C 1.38239 * 119.99926 * 115.28613 * 19 18 17 21 21 C 1.38230 * 119.99485 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00779 * 0.02562 * 21 20 19 23 23 C 1.38237 * 119.99679 * 359.97365 * 22 21 20 24 24 C 1.38232 * 120.00137 * 295.27099 * 19 18 17 25 25 C 1.53003 * 117.49861 * 80.45437 * 18 17 15 26 26 C 1.53005 * 117.49690 * 149.11193 * 18 17 15 27 27 C 1.53040 * 109.52487 * 61.37266 * 12 11 10 28 28 H 1.09001 * 109.50492 * 58.57796 * 27 12 11 29 29 O 1.42907 * 109.49500 * 178.67703 * 27 12 11 30 30 C 1.46922 * 120.63269 * 153.07838 * 9 7 2 31 31 H 0.96996 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.58737 * 113.83708 * 10 9 7 33 33 H 1.09000 * 109.58696 * 353.41559 * 10 9 7 34 34 H 1.08997 * 109.49783 * 185.41187 * 11 10 9 35 35 H 1.09007 * 109.49320 * 65.31527 * 11 10 9 36 36 H 0.97001 * 120.00307 * 264.97743 * 14 12 11 37 37 H 1.09001 * 109.47568 * 54.21802 * 17 15 14 38 38 H 1.09009 * 109.46944 * 294.22154 * 17 15 14 39 39 H 1.07992 * 119.99995 * 359.97438 * 20 19 18 40 40 H 1.08010 * 119.99490 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00441 * 179.70128 * 22 21 20 42 42 H 1.07996 * 120.00248 * 179.97438 * 23 22 21 43 43 H 1.08010 * 119.99931 * 359.97438 * 24 19 18 44 44 H 1.09004 * 117.50021 * 215.00278 * 25 18 17 45 45 H 1.08999 * 117.49666 * 0.02562 * 25 18 17 46 46 H 1.08999 * 117.50313 * 359.97438 * 26 18 17 47 47 H 1.09000 * 117.49801 * 144.97776 * 26 18 17 48 48 H 0.96697 * 113.99720 * 180.02562 * 29 27 12 49 49 H 1.09006 * 109.58827 * 246.16409 * 30 9 7 50 50 H 1.08998 * 109.58663 * 6.43827 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0525 -1.2241 -0.2817 9 7 1.3735 -2.3603 0.3589 10 6 0.2218 -2.3300 1.2706 11 6 0.4892 -3.2890 2.4349 12 6 0.8166 -4.6778 1.8816 13 1 -0.0163 -5.0326 1.2748 14 7 1.0406 -5.6056 2.9931 15 6 -0.0054 -6.2251 3.5751 16 8 -1.1320 -6.0148 3.1783 17 6 0.2250 -7.1790 4.7188 18 6 -1.1225 -7.6291 5.2867 19 6 -1.9495 -6.5477 5.9328 20 6 -3.1648 -6.1852 5.3827 21 6 -3.9231 -5.1929 5.9751 22 6 -3.4660 -4.5625 7.1173 23 6 -2.2507 -4.9249 7.6674 24 6 -1.4930 -5.9183 7.0758 25 6 -1.8678 -8.7386 4.5421 26 6 -1.2017 -9.0336 5.8884 27 6 2.0788 -4.6006 1.0198 28 1 2.9065 -4.2222 1.6197 29 8 2.4014 -5.9033 0.5286 30 6 1.8293 -3.6568 -0.1607 31 1 -0.4850 0.8400 0.0004 32 1 -0.6752 -2.6444 0.7369 33 1 0.0857 -1.3188 1.6540 34 1 -0.3963 -3.3489 3.0677 35 1 1.3320 -2.9230 3.0214 36 1 1.9418 -5.7740 3.3102 37 1 0.7993 -6.6792 5.4988 38 1 0.7773 -8.0481 4.3614 39 1 -3.5213 -6.6768 4.4896 40 1 -4.8725 -4.9094 5.5450 41 1 -4.0563 -3.7839 7.5773 42 1 -1.8934 -4.4322 8.5595 43 1 -0.5438 -6.2019 7.5060 44 1 -2.9563 -8.6863 4.5195 45 1 -1.3979 -9.1481 3.6479 46 1 -0.2941 -9.6371 5.8793 47 1 -1.8518 -9.1753 6.7518 48 1 3.1928 -5.9294 -0.0265 49 1 1.0635 -4.0794 -0.8112 50 1 2.7525 -3.5206 -0.7240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099872009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:58 Heat of formation + Delta-G solvation = -14.223552 kcal Electronic energy + Delta-G solvation = -30807.113153 eV Core-core repulsion = 26800.386983 eV Total energy + Delta-G solvation = -4006.726170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.28198 -39.19760 -37.92589 -36.85502 -35.39884 -34.17331 -31.99349 -30.95192 -30.54626 -30.36023 -29.18017 -28.23273 -25.06358 -23.31916 -23.08062 -22.40202 -21.88980 -21.79372 -20.35721 -19.65067 -19.10723 -17.32300 -17.02078 -16.63203 -16.45890 -15.88896 -15.51013 -14.99001 -14.80253 -14.73673 -14.58758 -13.99628 -13.95103 -13.84307 -13.38345 -13.34455 -13.17567 -12.80707 -12.61049 -12.44680 -12.23999 -12.18540 -11.80733 -11.61455 -11.55526 -11.15069 -11.10707 -11.02350 -10.86629 -10.64159 -10.56106 -10.31093 -10.25518 -10.06723 -9.93004 -9.74497 -9.66014 -9.31118 -8.83433 -8.68846 -8.57571 -8.41325 -6.77755 -5.84533 -3.27844 1.39792 1.49326 2.98718 3.30728 3.34663 3.41410 3.43180 3.72912 3.90836 4.37649 4.45802 4.53106 4.61071 4.74652 4.81532 5.03343 5.04412 5.18112 5.25266 5.31544 5.33678 5.40471 5.44573 5.48337 5.50016 5.57840 5.63786 5.69338 5.75191 5.79288 5.84527 5.99501 6.00019 6.08260 6.12366 6.15465 6.37310 6.49212 6.52198 6.57299 6.59016 6.69614 6.71410 6.78221 6.95017 7.06640 7.31168 7.62239 7.72840 7.85454 7.92043 8.37521 8.59326 9.13306 9.76127 10.31631 11.23883 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.003021 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.214251 B = 9267.133533 C =10786.837731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.145 4.145 12 C 0.166 3.834 13 H 0.086 0.914 14 N -0.721 5.721 15 C 0.511 3.489 16 O -0.528 6.528 17 C -0.101 4.101 18 C -0.068 4.068 19 C -0.039 4.039 20 C -0.085 4.085 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.156 4.156 26 C -0.168 4.168 27 C 0.080 3.920 28 H 0.055 0.945 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.022 0.978 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.373 0.627 49 H 0.028 0.972 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -16.427 13.920 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.185 4.185 12 C 0.062 3.938 13 H 0.104 0.896 14 N -0.371 5.371 15 C 0.296 3.704 16 O -0.404 6.404 17 C -0.141 4.141 18 C -0.068 4.068 19 C -0.039 4.039 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.193 4.193 26 C -0.205 4.205 27 C 0.019 3.981 28 H 0.073 0.927 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.226 0.774 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.219 0.781 49 H 0.046 0.954 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.823 -16.279 13.950 21.516 hybrid contribution 1.459 1.114 -0.260 1.854 sum -0.364 -15.164 13.690 20.433 Atomic orbital electron populations 1.70040 1.05288 1.25719 1.53190 1.25050 0.95287 0.98501 1.00631 0.86291 0.79141 0.83537 0.77749 1.21329 1.21456 1.20455 1.19150 0.92779 0.84748 1.42185 0.91556 1.44051 1.35268 1.00825 1.51083 1.20840 0.88459 0.98625 0.87573 1.22575 1.00867 0.94348 1.00717 1.20928 0.97168 0.89523 0.86222 0.89639 1.46103 1.09228 1.45829 1.35921 1.20402 0.85185 0.81050 0.83729 1.90697 1.22589 1.63464 1.63623 1.21204 0.96323 0.99563 0.97018 1.19634 0.95693 0.88454 1.03048 1.18872 0.94304 0.96322 0.94447 1.21019 0.93941 0.96813 0.98521 1.21154 1.00123 0.96763 0.96046 1.21117 0.96559 0.99858 0.96651 1.21046 0.95171 0.97878 1.00263 1.20898 0.99743 0.96898 0.95825 1.22977 0.99975 1.01123 0.95225 1.23146 1.03103 0.96660 0.97620 1.22779 0.96020 0.82927 0.96364 0.92713 1.86481 1.49969 1.30120 1.70978 1.21518 0.98685 0.87492 0.92984 0.93449 0.95943 0.88803 0.92003 0.92556 0.77363 0.88948 0.88733 0.85886 0.86265 0.86434 0.86385 0.86501 0.88530 0.88614 0.88550 0.88636 0.78100 0.95411 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.14 55.49 0.62 -25.36 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 3 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.26 -6.97 9.59 -15.06 -0.14 -7.12 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.53 3.00 -172.32 -0.52 -15.04 16 10 C 0.17 4.16 5.32 -3.71 -0.02 4.14 16 11 C -0.14 -2.91 5.65 -26.61 -0.15 -3.06 16 12 C 0.17 3.01 2.12 -67.89 -0.14 2.87 16 13 H 0.09 1.81 7.58 -51.94 -0.39 1.41 16 14 N -0.72 -10.70 4.92 -53.77 -0.26 -10.96 16 15 C 0.51 7.69 7.61 -10.98 -0.08 7.61 16 16 O -0.53 -9.85 14.39 5.56 0.08 -9.77 16 17 C -0.10 -1.09 5.50 -27.89 -0.15 -1.24 16 18 C -0.07 -0.75 1.20 -155.66 -0.19 -0.94 16 19 C -0.04 -0.50 4.43 -104.63 -0.46 -0.96 16 20 C -0.08 -1.15 8.43 -39.58 -0.33 -1.48 16 21 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 22 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.34 9.63 -39.58 -0.38 -1.73 16 25 C -0.16 -1.63 9.34 -26.69 -0.25 -1.88 16 26 C -0.17 -1.46 9.93 -26.69 -0.26 -1.72 16 27 C 0.08 1.37 3.14 -26.61 -0.08 1.29 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -8.52 13.16 -35.23 -0.46 -8.98 16 30 C 0.12 2.48 6.14 -3.71 -0.02 2.45 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.02 0.59 8.14 -51.92 -0.42 0.16 16 33 H 0.09 2.54 5.98 -51.93 -0.31 2.23 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.39 4.80 8.60 -40.82 -0.35 4.45 16 37 H 0.09 0.85 8.11 -51.93 -0.42 0.43 16 38 H 0.09 0.83 8.09 -51.92 -0.42 0.41 16 39 H 0.12 1.69 6.97 -52.49 -0.37 1.32 16 40 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 44 H 0.10 1.01 7.09 -51.93 -0.37 0.64 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.37 3.98 9.08 45.56 0.41 4.40 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -32.59 403.61 -10.71 -43.29 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.25 Total: 11.79 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.96 Total: -7.36 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.16 Total: -51.36 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.38 Total: -18.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.59 -10.71 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099872009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.070 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds