Wall clock time and date at job start Wed Apr 1 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86805 * 119.99834 * 2 1 4 4 H 1.48500 * 109.46719 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.47065 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.46950 * 149.99796 * 3 2 1 7 7 C 1.38814 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99656 * 162.43845 * 7 2 1 9 9 N 1.36930 * 120.00413 * 342.43765 * 7 2 1 10 10 C 1.46928 * 120.63005 * 333.05865 * 9 7 2 11 11 C 1.53188 * 108.77796 * 233.62518 * 10 9 7 12 12 C 1.53039 * 109.31154 * 305.36647 * 11 10 9 13 13 H 1.08988 * 109.46409 * 301.35474 * 12 11 10 14 14 N 1.46504 * 109.45959 * 181.37831 * 12 11 10 15 15 C 1.34781 * 119.99574 * 84.97221 * 14 12 11 16 16 O 1.21280 * 119.99882 * 0.02562 * 15 14 12 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 12 18 18 C 1.52994 * 109.47201 * 174.22189 * 17 15 14 19 19 C 1.50697 * 115.55231 * 294.78157 * 18 17 15 20 20 C 1.38239 * 119.99926 * 115.28613 * 19 18 17 21 21 C 1.38230 * 119.99485 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00779 * 0.02562 * 21 20 19 23 23 C 1.38237 * 119.99679 * 359.97365 * 22 21 20 24 24 C 1.38232 * 120.00137 * 295.27099 * 19 18 17 25 25 C 1.53003 * 117.49861 * 80.45437 * 18 17 15 26 26 C 1.53005 * 117.49690 * 149.11193 * 18 17 15 27 27 C 1.53040 * 109.52487 * 61.37266 * 12 11 10 28 28 H 1.09001 * 109.50492 * 58.57796 * 27 12 11 29 29 O 1.42907 * 109.49500 * 178.67703 * 27 12 11 30 30 C 1.46922 * 120.63269 * 153.07838 * 9 7 2 31 31 H 0.96996 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.09007 * 109.58737 * 113.83708 * 10 9 7 33 33 H 1.09000 * 109.58696 * 353.41559 * 10 9 7 34 34 H 1.08997 * 109.49783 * 185.41187 * 11 10 9 35 35 H 1.09007 * 109.49320 * 65.31527 * 11 10 9 36 36 H 0.97001 * 120.00307 * 264.97743 * 14 12 11 37 37 H 1.09001 * 109.47568 * 54.21802 * 17 15 14 38 38 H 1.09009 * 109.46944 * 294.22154 * 17 15 14 39 39 H 1.07992 * 119.99995 * 359.97438 * 20 19 18 40 40 H 1.08010 * 119.99490 * 179.97438 * 21 20 19 41 41 H 1.07995 * 120.00441 * 179.70128 * 22 21 20 42 42 H 1.07996 * 120.00248 * 179.97438 * 23 22 21 43 43 H 1.08010 * 119.99931 * 359.97438 * 24 19 18 44 44 H 1.09004 * 117.50021 * 215.00278 * 25 18 17 45 45 H 1.08999 * 117.49666 * 0.02562 * 25 18 17 46 46 H 1.08999 * 117.50313 * 359.97438 * 26 18 17 47 47 H 1.09000 * 117.49801 * 144.97776 * 26 18 17 48 48 H 0.96697 * 113.99720 * 180.02562 * 29 27 12 49 49 H 1.09006 * 109.58827 * 246.16409 * 30 9 7 50 50 H 1.08998 * 109.58663 * 6.43827 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0525 -1.2241 -0.2817 9 7 1.3735 -2.3603 0.3589 10 6 0.2218 -2.3300 1.2706 11 6 0.4892 -3.2890 2.4349 12 6 0.8166 -4.6778 1.8816 13 1 -0.0163 -5.0326 1.2748 14 7 1.0406 -5.6056 2.9931 15 6 -0.0054 -6.2251 3.5751 16 8 -1.1320 -6.0148 3.1783 17 6 0.2250 -7.1790 4.7188 18 6 -1.1225 -7.6291 5.2867 19 6 -1.9495 -6.5477 5.9328 20 6 -3.1648 -6.1852 5.3827 21 6 -3.9231 -5.1929 5.9751 22 6 -3.4660 -4.5625 7.1173 23 6 -2.2507 -4.9249 7.6674 24 6 -1.4930 -5.9183 7.0758 25 6 -1.8678 -8.7386 4.5421 26 6 -1.2017 -9.0336 5.8884 27 6 2.0788 -4.6006 1.0198 28 1 2.9065 -4.2222 1.6197 29 8 2.4014 -5.9033 0.5286 30 6 1.8293 -3.6568 -0.1607 31 1 -0.4850 0.8400 0.0004 32 1 -0.6752 -2.6444 0.7369 33 1 0.0857 -1.3188 1.6540 34 1 -0.3963 -3.3489 3.0677 35 1 1.3320 -2.9230 3.0214 36 1 1.9418 -5.7740 3.3102 37 1 0.7993 -6.6792 5.4988 38 1 0.7773 -8.0481 4.3614 39 1 -3.5213 -6.6768 4.4896 40 1 -4.8725 -4.9094 5.5450 41 1 -4.0563 -3.7839 7.5773 42 1 -1.8934 -4.4322 8.5595 43 1 -0.5438 -6.2019 7.5060 44 1 -2.9563 -8.6863 4.5195 45 1 -1.3979 -9.1481 3.6479 46 1 -0.2941 -9.6371 5.8793 47 1 -1.8518 -9.1753 6.7518 48 1 3.1928 -5.9294 -0.0265 49 1 1.0635 -4.0794 -0.8112 50 1 2.7525 -3.5206 -0.7240 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099872009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:56 Heat of formation + Delta-G solvation = -35.494616 kcal Electronic energy + Delta-G solvation = -30808.035536 eV Core-core repulsion = 26800.386983 eV Total energy + Delta-G solvation = -4007.648553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.33940 -40.38273 -39.25402 -37.77430 -36.98219 -35.62417 -33.79436 -32.07491 -31.74565 -31.41427 -30.56995 -29.65229 -26.90068 -24.39248 -23.97879 -23.88062 -23.51331 -22.61725 -21.58520 -21.22460 -20.13413 -18.95852 -18.07880 -17.98306 -17.71964 -17.26838 -16.73485 -16.40292 -15.98993 -15.74553 -15.69229 -15.48875 -15.45298 -14.96518 -14.90556 -14.59648 -14.37879 -14.22758 -13.87528 -13.69424 -13.52982 -13.29396 -13.09467 -13.01485 -12.88977 -12.71131 -12.38744 -12.35394 -12.11825 -12.06284 -12.00289 -11.88375 -11.86039 -11.40422 -11.35298 -11.09343 -10.89131 -10.59758 -10.54208 -9.92321 -9.75528 -9.48537 -8.79291 -7.91397 -5.38394 0.49757 0.56685 1.47165 1.49096 1.58857 1.83381 2.21059 2.48343 2.83648 3.02167 3.13313 3.26193 3.62333 3.66222 3.79889 3.84098 3.92351 3.96817 4.07343 4.17703 4.20576 4.22495 4.31844 4.37133 4.41275 4.53114 4.60185 4.64301 4.69095 4.77212 4.80897 4.83636 4.87380 4.92835 4.99339 5.02638 5.08522 5.10950 5.20051 5.24448 5.29296 5.36247 5.57227 5.59973 5.63107 5.64017 5.66969 5.80034 6.17943 6.31727 6.72220 6.88448 7.07774 7.45509 7.76567 8.29073 9.15861 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.003021 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.214251 B = 9267.133533 C =10786.837731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.266 4.266 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.181 3.819 11 C -0.125 4.125 12 C 0.175 3.825 13 H 0.049 0.951 14 N -0.710 5.710 15 C 0.503 3.497 16 O -0.571 6.571 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.049 4.049 20 C -0.110 4.110 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.173 4.173 26 C -0.136 4.136 27 C 0.104 3.896 28 H 0.073 0.927 29 O -0.569 6.569 30 C 0.117 3.883 31 H 0.250 0.750 32 H -0.014 1.014 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.395 0.605 49 H 0.009 0.991 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -17.863 15.942 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.165 4.165 12 C 0.069 3.931 13 H 0.068 0.932 14 N -0.362 5.362 15 C 0.291 3.709 16 O -0.449 6.449 17 C -0.130 4.130 18 C -0.084 4.084 19 C -0.049 4.049 20 C -0.128 4.128 21 C -0.160 4.160 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.210 4.210 26 C -0.173 4.173 27 C 0.043 3.957 28 H 0.091 0.909 29 O -0.377 6.377 30 C -0.010 4.010 31 H 0.059 0.941 32 H 0.005 0.995 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.141 0.859 47 H 0.117 0.883 48 H 0.245 0.755 49 H 0.027 0.973 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.604 -17.768 15.976 23.948 hybrid contribution 0.358 1.497 -0.969 1.818 sum 1.962 -16.272 15.007 22.222 Atomic orbital electron populations 1.70220 1.06999 1.26042 1.55037 1.25890 0.95982 1.01905 1.00999 0.85220 0.78166 0.79105 0.77602 1.21115 1.22188 1.18874 1.19583 0.93371 0.85590 1.41052 0.90414 1.44257 1.34997 1.01994 1.51551 1.20533 0.87563 0.97826 0.88629 1.22264 1.00726 0.94836 0.98688 1.20485 0.96726 0.88713 0.87165 0.93246 1.45896 1.10410 1.44985 1.34883 1.21305 0.84337 0.81027 0.84224 1.90701 1.24420 1.64817 1.64974 1.21241 0.96714 0.99468 0.95584 1.19714 0.95739 0.88949 1.04035 1.19130 0.94013 0.96886 0.94869 1.21074 0.95321 0.97806 0.98646 1.21364 1.00620 0.97109 0.96867 1.21404 0.97297 1.00240 0.96381 1.21431 0.94781 0.97687 1.00883 1.21224 1.00701 0.96621 0.95371 1.22973 0.99524 1.01976 0.96535 1.23215 1.03494 0.94413 0.96185 1.22280 0.95740 0.83091 0.94637 0.90887 1.86452 1.51579 1.28140 1.71493 1.21705 0.98538 0.86311 0.94450 0.94066 0.99541 0.91925 0.93118 0.91412 0.75226 0.86453 0.85841 0.87586 0.85844 0.84658 0.83903 0.83974 0.89778 0.88794 0.85909 0.88253 0.75463 0.97340 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 11.14 21.65 0.24 -56.02 16 2 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 3 Si 0.97 44.15 29.59 68.60 2.03 46.18 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.27 -14.30 9.59 84.04 0.81 -13.49 16 8 H 0.08 3.93 7.88 -2.91 -0.02 3.91 16 9 N -0.60 -30.19 3.00 -699.11 -2.10 -32.28 16 10 C 0.18 9.21 5.32 86.36 0.46 9.67 16 11 C -0.12 -5.10 5.65 30.67 0.17 -4.93 16 12 C 0.17 6.28 2.12 45.02 0.10 6.38 16 13 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 14 N -0.71 -19.66 4.92 -442.41 -2.18 -21.83 16 15 C 0.50 14.51 7.61 87.66 0.67 15.17 16 16 O -0.57 -21.83 14.39 -3.03 -0.04 -21.87 16 17 C -0.09 -1.67 5.50 29.85 0.16 -1.50 16 18 C -0.08 -1.70 1.20 -52.93 -0.06 -1.76 16 19 C -0.05 -1.20 4.43 -19.87 -0.09 -1.29 16 20 C -0.11 -3.14 8.43 22.27 0.19 -2.96 16 21 C -0.14 -3.75 10.05 22.27 0.22 -3.53 16 22 C -0.14 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.13 -2.73 10.05 22.27 0.22 -2.51 16 24 C -0.12 -2.58 9.63 22.27 0.21 -2.36 16 25 C -0.17 -3.51 9.34 30.62 0.29 -3.23 16 26 C -0.14 -1.96 9.93 30.62 0.30 -1.66 16 27 C 0.10 3.34 3.14 30.67 0.10 3.43 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 O -0.57 -15.24 13.16 -148.98 -1.96 -17.20 16 30 C 0.12 4.71 6.14 86.36 0.53 5.24 16 31 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 32 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 33 H 0.06 3.57 5.98 -2.39 -0.01 3.55 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.41 8.51 8.60 -92.71 -0.80 7.71 16 37 H 0.12 1.61 8.11 -2.39 -0.02 1.59 16 38 H 0.12 1.60 8.09 -2.38 -0.02 1.58 16 39 H 0.11 3.24 6.97 -2.91 -0.02 3.22 16 40 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 41 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 42 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.08 1.87 7.09 -2.38 -0.02 1.85 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.40 6.91 9.08 -74.06 -0.67 6.24 16 49 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 50 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 Total: -1.00 -74.67 403.61 0.40 -74.27 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.52 Total: 33.48 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 4.92 Total: -4.72 kcal Atomic # 7 Polarization: -106.11 SS G_CDS: -4.03 Total: -110.14 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -2.00 Total: -39.08 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.67 0.40 -74.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099872009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.777 kcal (2) G-P(sol) polarization free energy of solvation -74.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds