Wall clock time and date at job start Wed Apr 1 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00357 * 2 1 4 4 H 1.48501 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47320 * 299.99996 * 3 2 1 6 6 H 1.48501 * 109.46983 * 59.99959 * 3 2 1 7 7 C 1.38821 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99390 * 180.25261 * 7 2 1 9 9 N 1.36930 * 120.00085 * 0.25438 * 7 2 1 10 10 C 1.46927 * 120.62994 * 323.72200 * 9 7 2 11 11 C 1.53190 * 108.76590 * 233.63861 * 10 9 7 12 12 C 1.53035 * 109.31750 * 305.34545 * 11 10 9 13 13 H 1.09003 * 109.46000 * 301.37534 * 12 11 10 14 14 N 1.46496 * 109.46590 * 181.39783 * 12 11 10 15 15 C 1.34775 * 120.00090 * 84.97187 * 14 12 11 16 16 O 1.21280 * 119.99848 * 0.27862 * 15 14 12 17 17 C 1.50701 * 119.99908 * 180.02562 * 15 14 12 18 18 C 1.50707 * 109.46926 * 179.97438 * 17 15 14 19 19 C 1.31004 * 119.99442 * 128.12999 * 18 17 15 20 20 C 1.50699 * 120.00262 * 7.66553 * 19 18 17 21 21 C 1.50693 * 109.47190 * 126.46549 * 20 19 18 22 22 C 1.38236 * 120.00258 * 269.72615 * 21 20 19 23 23 C 1.38233 * 119.99953 * 179.74338 * 22 21 20 24 24 C 1.38228 * 119.99986 * 0.55031 * 23 22 21 25 25 C 1.38234 * 120.00190 * 359.70368 * 24 23 22 26 26 C 1.38234 * 120.00022 * 0.02562 * 25 24 23 27 27 C 1.53046 * 109.52481 * 61.38530 * 12 11 10 28 28 H 1.08999 * 109.50108 * 58.61083 * 27 12 11 29 29 O 1.42899 * 109.49949 * 178.68286 * 27 12 11 30 30 C 1.46922 * 120.63482 * 143.74875 * 9 7 2 31 31 H 0.97003 * 119.99622 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58871 * 353.42054 * 10 9 7 33 33 H 1.09006 * 109.58907 * 113.70414 * 10 9 7 34 34 H 1.09000 * 109.48907 * 185.39644 * 11 10 9 35 35 H 1.09001 * 109.50886 * 65.30617 * 11 10 9 36 36 H 0.97002 * 120.00201 * 264.97590 * 14 12 11 37 37 H 1.08996 * 109.47606 * 299.99858 * 17 15 14 38 38 H 1.09000 * 109.47136 * 60.00583 * 17 15 14 39 39 H 1.07999 * 120.00254 * 308.13224 * 18 17 15 40 40 H 1.07998 * 119.99400 * 187.66384 * 19 18 17 41 41 H 1.09003 * 109.46522 * 246.46728 * 20 19 18 42 42 H 1.08997 * 109.46799 * 6.46152 * 20 19 18 43 43 H 1.08000 * 119.99609 * 359.97438 * 22 21 20 44 44 H 1.08003 * 119.99664 * 180.27281 * 23 22 21 45 45 H 1.08003 * 120.00145 * 179.72295 * 24 23 22 46 46 H 1.08007 * 119.99782 * 179.97438 * 25 24 23 47 47 H 1.07996 * 119.99942 * 179.97438 * 26 25 24 48 48 H 0.96694 * 114.00442 * 180.02562 * 29 27 12 49 49 H 1.09007 * 109.58465 * 6.57826 * 30 9 7 50 50 H 1.08994 * 109.70754 * 246.22848 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 0.0036 9 7 1.3255 -2.3881 -0.0063 10 6 0.0657 -2.5287 0.7365 11 6 0.1748 -3.7407 1.6670 12 6 0.5624 -4.9742 0.8483 13 1 -0.1874 -5.1479 0.0764 14 7 0.6351 -6.1420 1.7298 15 6 -0.4811 -6.8413 2.0154 16 8 -1.5449 -6.5066 1.5387 17 6 -0.4063 -8.0423 2.9226 18 6 -1.7810 -8.6397 3.0795 19 6 -1.9682 -9.9180 2.8624 20 6 -0.7868 -10.8231 2.6259 21 6 -0.8439 -11.9844 3.5845 22 6 -0.2265 -11.8935 4.8180 23 6 -0.2834 -12.9568 5.6995 24 6 -0.9480 -14.1152 5.3430 25 6 -1.5609 -14.2082 4.1074 26 6 -1.5088 -13.1428 3.2281 27 6 1.9259 -4.7449 0.1922 28 1 2.6715 -4.5469 0.9623 29 8 2.3012 -5.9088 -0.5471 30 6 1.8368 -3.5442 -0.7550 31 1 -0.4850 0.8401 0.0004 32 1 -0.1128 -1.6298 1.3267 33 1 -0.7569 -2.6755 0.0365 34 1 -0.7853 -3.9136 2.1531 35 1 0.9370 -3.5517 2.4231 36 1 1.4866 -6.4121 2.1079 37 1 0.2651 -8.7836 2.4895 38 1 -0.0296 -7.7373 3.8989 39 1 -2.6117 -8.0140 3.3708 40 1 -2.9693 -10.3231 2.8529 41 1 -0.8138 -11.1956 1.6018 42 1 0.1359 -10.2653 2.7854 43 1 0.2971 -10.9903 5.0945 44 1 0.1952 -12.8841 6.6649 45 1 -0.9886 -14.9477 6.0299 46 1 -2.0797 -15.1135 3.8288 47 1 -1.9872 -13.2156 2.2627 48 1 3.1575 -5.8342 -0.9902 49 1 2.8271 -3.3154 -1.1490 50 1 1.1612 -3.7773 -1.5779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099881402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:23 Heat of formation + Delta-G solvation = -27.960958 kcal Electronic energy + Delta-G solvation = -29093.783728 eV Core-core repulsion = 25086.461860 eV Total energy + Delta-G solvation = -4007.321869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.88126 -39.51932 -38.00936 -36.05109 -35.37959 -34.24020 -32.35552 -31.88967 -31.17951 -30.13131 -28.87720 -28.12342 -26.22191 -24.92294 -22.86950 -22.43949 -21.91979 -21.73003 -20.34370 -19.55007 -18.50447 -17.46115 -17.06128 -16.78603 -16.53823 -15.94958 -15.81544 -15.45705 -15.09922 -14.85815 -14.50572 -14.02252 -13.94133 -13.83937 -13.72317 -13.43236 -13.27510 -13.21174 -12.90638 -12.68972 -12.39614 -12.23383 -12.14781 -11.81167 -11.48489 -11.39428 -11.27785 -11.08995 -10.98239 -10.94079 -10.66866 -10.31419 -10.19866 -10.03538 -9.78827 -9.70597 -9.43765 -9.22246 -9.09533 -8.95668 -8.69104 -8.46408 -6.64548 -5.86431 -3.41872 1.04612 1.10366 2.05613 2.90235 3.31854 3.39296 3.41104 3.49054 3.51916 4.35977 4.48003 4.51333 4.56499 4.66830 4.70856 4.83470 4.88576 5.00345 5.12442 5.19767 5.24968 5.28866 5.33058 5.38608 5.44540 5.49573 5.51195 5.57968 5.73715 5.74591 5.79183 5.88134 5.99494 6.15245 6.16587 6.21594 6.32617 6.35965 6.48399 6.50370 6.57011 6.64527 6.69874 6.73796 6.79509 6.91754 7.34567 7.69458 7.72414 7.79652 7.92020 8.43805 8.51453 9.15171 9.72698 10.32987 11.20940 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.001718 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.815050 B =16294.852179 C =16523.703400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.012 3.988 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.086 0.914 14 N -0.718 5.718 15 C 0.514 3.486 16 O -0.540 6.540 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.158 4.158 20 C -0.064 4.064 21 C -0.071 4.071 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.118 4.118 27 C 0.080 3.920 28 H 0.055 0.945 29 O -0.572 6.572 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.097 0.903 33 H 0.022 0.978 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.395 0.605 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.373 0.627 49 H 0.059 0.941 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.363 -25.258 9.484 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.188 4.188 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.104 0.896 14 N -0.368 5.368 15 C 0.300 3.700 16 O -0.417 6.417 17 C -0.163 4.163 18 C -0.141 4.141 19 C -0.176 4.176 20 C -0.100 4.100 21 C -0.071 4.071 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.136 4.136 27 C 0.019 3.981 28 H 0.073 0.927 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.228 0.772 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.219 0.781 49 H 0.078 0.922 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.095 -25.065 9.343 26.750 hybrid contribution 1.307 0.950 0.003 1.616 sum 1.211 -24.114 9.346 25.891 Atomic orbital electron populations 1.69933 1.05390 1.25648 1.53337 1.25370 0.95538 0.98496 0.99387 0.86180 0.79286 0.83667 0.77374 1.20180 1.21418 1.21523 1.19155 0.90196 0.82960 1.46828 0.91798 1.43947 1.24869 1.08359 1.54098 1.20911 0.87205 0.94842 0.92597 1.22628 1.00519 0.95993 0.99596 1.20991 0.96615 0.84657 0.91860 0.89570 1.46112 1.10095 1.30430 1.50149 1.20407 0.84164 0.83763 0.81706 1.90709 1.28869 1.69386 1.52711 1.20929 0.97947 0.96800 1.00603 1.22404 0.96982 0.95481 0.99277 1.22566 0.98490 0.94451 1.02101 1.19882 0.98004 0.93852 0.98294 1.19815 0.97244 0.94853 0.95156 1.21076 0.99881 0.98789 0.93584 1.21153 0.99406 0.93622 0.99493 1.21143 0.98628 0.98042 0.96823 1.21148 0.99677 0.98665 0.94253 1.21094 0.99500 0.93166 0.99877 1.22790 0.95085 0.86130 0.94118 0.92732 1.86478 1.41712 1.39458 1.69935 1.21549 0.98631 0.87577 0.92918 0.93361 0.88457 0.95938 0.92079 0.92523 0.77183 0.87971 0.88292 0.86376 0.86901 0.90099 0.89726 0.86050 0.86145 0.86298 0.86195 0.86061 0.78065 0.92236 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 10.85 55.49 0.60 -25.11 16 2 C 0.01 0.32 5.25 -17.43 -0.09 0.23 16 3 Si 0.91 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -6.96 9.54 -15.06 -0.14 -7.11 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 9 N -0.59 -14.40 2.98 -172.32 -0.51 -14.91 16 10 C 0.17 4.10 5.23 -3.71 -0.02 4.08 16 11 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.79 16 13 H 0.09 1.82 7.57 -51.93 -0.39 1.43 16 14 N -0.72 -10.48 4.92 -53.77 -0.26 -10.74 16 15 C 0.51 7.74 7.79 -10.99 -0.09 7.65 16 16 O -0.54 -10.54 15.68 5.56 0.09 -10.45 16 17 C -0.12 -1.27 5.77 -29.03 -0.17 -1.44 16 18 C -0.12 -1.36 8.76 -36.02 -0.32 -1.67 16 19 C -0.16 -1.53 9.49 -36.03 -0.34 -1.87 16 20 C -0.06 -0.53 5.44 -29.04 -0.16 -0.69 16 21 C -0.07 -0.60 5.12 -104.63 -0.54 -1.13 16 22 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 23 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 24 C -0.13 -0.93 10.05 -39.59 -0.40 -1.33 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.28 16 26 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 27 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 O -0.57 -8.46 13.16 -35.23 -0.46 -8.93 16 30 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.10 2.60 6.13 -51.93 -0.32 2.29 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.62 8.60 -40.82 -0.35 4.27 16 37 H 0.10 0.87 5.33 -51.93 -0.28 0.60 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.42 8.04 -52.49 -0.42 1.00 16 40 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.08 0.64 5.24 -51.93 -0.27 0.36 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 45 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 46 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.37 3.95 9.08 45.56 0.41 4.36 16 49 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 50 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.85 406.80 -10.74 -43.58 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.07 Total: 9.38 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.22 Total: -5.07 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.18 Total: -50.77 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.38 Total: -19.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.85 -10.74 -43.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099881402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.623 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds