Wall clock time and date at job start Wed Apr 1 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 120.00357 * 2 1 4 4 H 1.48501 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47320 * 299.99996 * 3 2 1 6 6 H 1.48501 * 109.46983 * 59.99959 * 3 2 1 7 7 C 1.38821 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99390 * 180.25261 * 7 2 1 9 9 N 1.36930 * 120.00085 * 0.25438 * 7 2 1 10 10 C 1.46927 * 120.62994 * 323.72200 * 9 7 2 11 11 C 1.53190 * 108.76590 * 233.63861 * 10 9 7 12 12 C 1.53035 * 109.31750 * 305.34545 * 11 10 9 13 13 H 1.09003 * 109.46000 * 301.37534 * 12 11 10 14 14 N 1.46496 * 109.46590 * 181.39783 * 12 11 10 15 15 C 1.34775 * 120.00090 * 84.97187 * 14 12 11 16 16 O 1.21280 * 119.99848 * 0.27862 * 15 14 12 17 17 C 1.50701 * 119.99908 * 180.02562 * 15 14 12 18 18 C 1.50707 * 109.46926 * 179.97438 * 17 15 14 19 19 C 1.31004 * 119.99442 * 128.12999 * 18 17 15 20 20 C 1.50699 * 120.00262 * 7.66553 * 19 18 17 21 21 C 1.50693 * 109.47190 * 126.46549 * 20 19 18 22 22 C 1.38236 * 120.00258 * 269.72615 * 21 20 19 23 23 C 1.38233 * 119.99953 * 179.74338 * 22 21 20 24 24 C 1.38228 * 119.99986 * 0.55031 * 23 22 21 25 25 C 1.38234 * 120.00190 * 359.70368 * 24 23 22 26 26 C 1.38234 * 120.00022 * 0.02562 * 25 24 23 27 27 C 1.53046 * 109.52481 * 61.38530 * 12 11 10 28 28 H 1.08999 * 109.50108 * 58.61083 * 27 12 11 29 29 O 1.42899 * 109.49949 * 178.68286 * 27 12 11 30 30 C 1.46922 * 120.63482 * 143.74875 * 9 7 2 31 31 H 0.97003 * 119.99622 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58871 * 353.42054 * 10 9 7 33 33 H 1.09006 * 109.58907 * 113.70414 * 10 9 7 34 34 H 1.09000 * 109.48907 * 185.39644 * 11 10 9 35 35 H 1.09001 * 109.50886 * 65.30617 * 11 10 9 36 36 H 0.97002 * 120.00201 * 264.97590 * 14 12 11 37 37 H 1.08996 * 109.47606 * 299.99858 * 17 15 14 38 38 H 1.09000 * 109.47136 * 60.00583 * 17 15 14 39 39 H 1.07999 * 120.00254 * 308.13224 * 18 17 15 40 40 H 1.07998 * 119.99400 * 187.66384 * 19 18 17 41 41 H 1.09003 * 109.46522 * 246.46728 * 20 19 18 42 42 H 1.08997 * 109.46799 * 6.46152 * 20 19 18 43 43 H 1.08000 * 119.99609 * 359.97438 * 22 21 20 44 44 H 1.08003 * 119.99664 * 180.27281 * 23 22 21 45 45 H 1.08003 * 120.00145 * 179.72295 * 24 23 22 46 46 H 1.08007 * 119.99782 * 179.97438 * 25 24 23 47 47 H 1.07996 * 119.99942 * 179.97438 * 26 25 24 48 48 H 0.96694 * 114.00442 * 180.02562 * 29 27 12 49 49 H 1.09007 * 109.58465 * 6.57826 * 30 9 7 50 50 H 1.08994 * 109.70754 * 246.22848 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 0.0036 9 7 1.3255 -2.3881 -0.0063 10 6 0.0657 -2.5287 0.7365 11 6 0.1748 -3.7407 1.6670 12 6 0.5624 -4.9742 0.8483 13 1 -0.1874 -5.1479 0.0764 14 7 0.6351 -6.1420 1.7298 15 6 -0.4811 -6.8413 2.0154 16 8 -1.5449 -6.5066 1.5387 17 6 -0.4063 -8.0423 2.9226 18 6 -1.7810 -8.6397 3.0795 19 6 -1.9682 -9.9180 2.8624 20 6 -0.7868 -10.8231 2.6259 21 6 -0.8439 -11.9844 3.5845 22 6 -0.2265 -11.8935 4.8180 23 6 -0.2834 -12.9568 5.6995 24 6 -0.9480 -14.1152 5.3430 25 6 -1.5609 -14.2082 4.1074 26 6 -1.5088 -13.1428 3.2281 27 6 1.9259 -4.7449 0.1922 28 1 2.6715 -4.5469 0.9623 29 8 2.3012 -5.9088 -0.5471 30 6 1.8368 -3.5442 -0.7550 31 1 -0.4850 0.8401 0.0004 32 1 -0.1128 -1.6298 1.3267 33 1 -0.7569 -2.6755 0.0365 34 1 -0.7853 -3.9136 2.1531 35 1 0.9370 -3.5517 2.4231 36 1 1.4866 -6.4121 2.1079 37 1 0.2651 -8.7836 2.4895 38 1 -0.0296 -7.7373 3.8989 39 1 -2.6117 -8.0140 3.3708 40 1 -2.9693 -10.3231 2.8529 41 1 -0.8138 -11.1956 1.6018 42 1 0.1359 -10.2653 2.7854 43 1 0.2971 -10.9903 5.0945 44 1 0.1952 -12.8841 6.6649 45 1 -0.9886 -14.9477 6.0299 46 1 -2.0797 -15.1135 3.8288 47 1 -1.9872 -13.2156 2.2627 48 1 3.1575 -5.8342 -0.9902 49 1 2.8271 -3.3154 -1.1490 50 1 1.1612 -3.7773 -1.5779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099881402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:22 Heat of formation + Delta-G solvation = -49.221531 kcal Electronic energy + Delta-G solvation = -29094.705656 eV Core-core repulsion = 25086.461860 eV Total energy + Delta-G solvation = -4008.243796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.10723 -40.16579 -39.42974 -36.94825 -36.86197 -35.68760 -33.81934 -32.94935 -31.75456 -31.70603 -30.32104 -29.24017 -27.20171 -26.49580 -24.08293 -23.56075 -23.38838 -22.33949 -21.60768 -21.18152 -19.39821 -18.92103 -18.17316 -18.00841 -17.58889 -17.26169 -16.85060 -16.64933 -16.02493 -15.91630 -15.68865 -15.55848 -15.25754 -14.96007 -14.88564 -14.58608 -14.37317 -14.22607 -13.92775 -13.80107 -13.64993 -13.48872 -13.15635 -12.98933 -12.97147 -12.82058 -12.74727 -12.37782 -12.13006 -12.00053 -11.93564 -11.91029 -11.88199 -11.64937 -11.35444 -11.06626 -10.80641 -10.59567 -10.00338 -9.89603 -9.76273 -9.53633 -8.63171 -7.90559 -5.49809 0.48197 0.55864 1.24343 1.47294 1.48775 1.59226 1.72709 2.33178 2.47306 2.93969 3.15075 3.28198 3.65817 3.77433 3.86856 3.96379 3.97873 4.06717 4.09601 4.21407 4.24620 4.29091 4.34346 4.37941 4.41270 4.52849 4.56613 4.64427 4.71560 4.74444 4.81911 4.86507 4.91162 4.98555 5.05043 5.10556 5.13901 5.18712 5.23508 5.41520 5.54625 5.62392 5.62716 5.68358 5.69264 5.69978 5.76127 5.89240 6.19341 6.39891 6.65814 6.90129 7.12302 7.36836 7.76135 8.32861 9.15547 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.001718 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.815050 B =16294.852179 C =16523.703400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.268 4.268 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.129 4.129 12 C 0.170 3.830 13 H 0.050 0.950 14 N -0.705 5.705 15 C 0.508 3.492 16 O -0.591 6.591 17 C -0.108 4.108 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.083 4.083 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.132 4.132 27 C 0.103 3.897 28 H 0.074 0.926 29 O -0.570 6.570 30 C 0.117 3.883 31 H 0.251 0.749 32 H 0.066 0.934 33 H -0.013 1.013 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.128 0.872 48 H 0.396 0.604 49 H 0.076 0.924 50 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 -27.339 10.649 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.398 4.398 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.053 3.947 11 C -0.169 4.169 12 C 0.064 3.936 13 H 0.068 0.932 14 N -0.356 5.356 15 C 0.297 3.703 16 O -0.472 6.472 17 C -0.147 4.147 18 C -0.165 4.165 19 C -0.163 4.163 20 C -0.097 4.097 21 C -0.083 4.083 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.150 4.150 27 C 0.042 3.958 28 H 0.092 0.908 29 O -0.378 6.378 30 C -0.009 4.009 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.005 0.995 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.251 0.749 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.154 0.846 47 H 0.146 0.854 48 H 0.246 0.754 49 H 0.094 0.906 50 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 2.713 -27.198 10.514 29.286 hybrid contribution 0.419 1.481 -0.402 1.591 sum 3.132 -25.717 10.112 27.810 Atomic orbital electron populations 1.70132 1.07027 1.25967 1.55067 1.26179 0.96255 1.01974 0.99773 0.85120 0.78838 0.79320 0.76639 1.18347 1.22051 1.21777 1.19559 0.90850 0.83785 1.45556 0.90710 1.44138 1.24562 1.09216 1.54987 1.20594 0.86534 0.95420 0.92168 1.22334 1.00670 0.95060 0.98871 1.20581 0.96495 0.85109 0.91388 0.93213 1.45882 1.11214 1.29129 1.49382 1.21309 0.83164 0.84493 0.81359 1.90697 1.30835 1.70908 1.54734 1.20909 0.98105 0.94827 1.00857 1.22354 0.97103 0.95834 1.01193 1.22698 0.99206 0.94249 1.00115 1.19882 0.97605 0.93663 0.98552 1.19889 0.97934 0.95014 0.95511 1.21311 1.00055 0.99533 0.93587 1.21443 0.99415 0.93563 1.00201 1.21457 0.98195 0.98652 0.97113 1.21425 0.99751 0.99176 0.94346 1.21312 0.99746 0.93466 1.00507 1.22305 0.94696 0.85196 0.93639 0.90771 1.86449 1.43586 1.37739 1.69979 1.21710 0.98606 0.87612 0.93004 0.93961 0.91578 0.99502 0.92807 0.91184 0.74862 0.85413 0.85406 0.88313 0.87048 0.89717 0.88539 0.84898 0.84504 0.84521 0.84631 0.85375 0.75430 0.90601 0.97296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.55 10.85 21.65 0.23 -55.31 16 2 C -0.05 -2.53 5.25 84.86 0.45 -2.08 16 3 Si 0.97 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.27 -14.20 9.54 84.04 0.80 -13.40 16 8 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.60 -29.88 2.98 -699.10 -2.09 -31.97 16 10 C 0.18 9.01 5.23 86.36 0.45 9.46 16 11 C -0.13 -5.17 5.65 30.67 0.17 -4.99 16 12 C 0.17 6.05 2.12 45.02 0.10 6.15 16 13 H 0.05 2.17 7.57 -2.39 -0.02 2.15 16 14 N -0.71 -19.19 4.92 -442.41 -2.18 -21.36 16 15 C 0.51 14.76 7.79 87.66 0.68 15.44 16 16 O -0.59 -23.60 15.68 -3.03 -0.05 -23.64 16 17 C -0.11 -1.97 5.77 29.10 0.17 -1.80 16 18 C -0.15 -3.10 8.76 25.64 0.22 -2.87 16 19 C -0.14 -2.63 9.49 25.64 0.24 -2.39 16 20 C -0.06 -0.88 5.44 29.10 0.16 -0.72 16 21 C -0.08 -1.27 5.12 -19.87 -0.10 -1.37 16 22 C -0.13 -1.80 9.70 22.27 0.22 -1.58 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 24 C -0.14 -1.72 10.05 22.27 0.22 -1.49 16 25 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 26 C -0.13 -1.95 9.70 22.27 0.22 -1.74 16 27 C 0.10 3.26 3.14 30.67 0.10 3.36 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 O -0.57 -15.10 13.16 -148.98 -1.96 -17.06 16 30 C 0.12 4.69 6.14 86.36 0.53 5.22 16 31 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.07 3.72 6.13 -2.39 -0.01 3.71 16 33 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 8.16 8.60 -92.71 -0.80 7.36 16 37 H 0.13 1.70 5.33 -2.39 -0.01 1.68 16 38 H 0.13 1.62 8.14 -2.39 -0.02 1.61 16 39 H 0.10 2.45 8.04 -2.91 -0.02 2.43 16 40 H 0.11 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 42 H 0.10 1.13 5.24 -2.39 -0.01 1.12 16 43 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 48 H 0.40 6.80 9.08 -74.06 -0.67 6.13 16 49 H 0.08 2.75 7.93 -2.38 -0.02 2.73 16 50 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -74.46 406.80 0.55 -73.92 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.52 Total: 27.39 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.07 Total: 2.27 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.03 Total: -108.64 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -2.01 Total: -40.70 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.46 0.55 -73.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099881402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.695 kcal (2) G-P(sol) polarization free energy of solvation -74.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds