Wall clock time and date at job start Wed Apr 1 2020 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48500 * 109.46953 * 272.89624 * 3 2 1 5 5 H 1.48493 * 109.47232 * 32.90094 * 3 2 1 6 6 H 1.48500 * 109.47067 * 152.90210 * 3 2 1 7 7 C 1.38810 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00598 * 339.36236 * 7 2 1 9 9 N 1.36942 * 120.00175 * 159.36426 * 7 2 1 10 10 C 1.46929 * 120.62496 * 332.60302 * 9 7 2 11 11 C 1.53198 * 108.76052 * 233.63539 * 10 9 7 12 12 C 1.53042 * 109.31243 * 305.34482 * 11 10 9 13 13 H 1.09001 * 109.46020 * 301.37503 * 12 11 10 14 14 N 1.46502 * 109.45969 * 181.40165 * 12 11 10 15 15 C 1.34777 * 120.00073 * 84.96906 * 14 12 11 16 16 O 1.21278 * 120.00130 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00056 * 179.97438 * 15 14 12 18 18 C 1.50699 * 109.47212 * 180.02562 * 17 15 14 19 19 C 1.30996 * 120.00362 * 125.00058 * 18 17 15 20 20 C 1.50699 * 120.00362 * 180.02562 * 19 18 17 21 21 C 1.50690 * 109.47231 * 125.00032 * 20 19 18 22 22 C 1.38230 * 120.00116 * 269.73023 * 21 20 19 23 23 C 1.38245 * 120.00320 * 179.74666 * 22 21 20 24 24 C 1.38233 * 119.99320 * 0.54564 * 23 22 21 25 25 C 1.38234 * 120.00608 * 359.70338 * 24 23 22 26 26 C 1.38236 * 119.99673 * 0.02562 * 25 24 23 27 27 C 1.53039 * 109.52673 * 61.38585 * 12 11 10 28 28 H 1.08996 * 109.49574 * 58.61443 * 27 12 11 29 29 O 1.42903 * 109.49634 * 178.67409 * 27 12 11 30 30 C 1.46921 * 120.63593 * 152.62108 * 9 7 2 31 31 H 0.97007 * 119.99388 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.58806 * 353.41354 * 10 9 7 33 33 H 1.08999 * 109.59019 * 113.69935 * 10 9 7 34 34 H 1.08998 * 109.48284 * 185.40251 * 11 10 9 35 35 H 1.08994 * 109.50677 * 65.30465 * 11 10 9 36 36 H 0.96998 * 119.99650 * 264.97661 * 14 12 11 37 37 H 1.09005 * 109.46812 * 60.00013 * 17 15 14 38 38 H 1.09000 * 109.47157 * 300.00515 * 17 15 14 39 39 H 1.08001 * 119.99862 * 304.99687 * 18 17 15 40 40 H 1.08008 * 119.99727 * 0.02562 * 19 18 17 41 41 H 1.08999 * 109.46786 * 245.00277 * 20 19 18 42 42 H 1.08997 * 109.46747 * 4.99822 * 20 19 18 43 43 H 1.07995 * 120.00321 * 359.97438 * 22 21 20 44 44 H 1.07992 * 120.00386 * 180.27281 * 23 22 21 45 45 H 1.08007 * 119.99737 * 179.73015 * 24 23 22 46 46 H 1.07997 * 120.00648 * 179.97438 * 25 24 23 47 47 H 1.07999 * 120.00350 * 179.97438 * 26 25 24 48 48 H 0.96701 * 113.99566 * 179.97438 * 29 27 12 49 49 H 1.09001 * 109.58508 * 6.58526 * 30 9 7 50 50 H 1.08998 * 109.70480 * 246.23079 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4365 2.0817 -1.3983 5 1 1.4798 2.6341 0.7605 6 1 3.5771 1.4231 0.6378 7 6 2.0101 -1.2022 0.0005 8 1 1.5221 -2.1074 0.3306 9 7 3.3137 -1.2406 -0.4174 10 6 3.8175 -0.2599 -1.3886 11 6 4.4616 -1.0109 -2.5582 12 6 5.5283 -1.9671 -2.0198 13 1 6.2777 -1.4009 -1.4666 14 7 6.1696 -2.6627 -3.1384 15 6 7.1990 -2.0858 -3.7895 16 8 7.5948 -0.9911 -3.4492 17 6 7.8591 -2.8015 -4.9398 18 6 8.9733 -1.9485 -5.4893 19 6 10.1864 -2.4346 -5.5806 20 6 11.3007 -1.5814 -6.1296 21 6 12.4302 -1.5285 -5.1335 22 6 12.4598 -0.5336 -4.1743 23 6 13.4933 -0.4881 -3.2572 24 6 14.5030 -1.4310 -3.3065 25 6 14.4762 -2.4229 -4.2690 26 6 13.4398 -2.4716 -5.1825 27 6 4.8744 -2.9916 -1.0898 28 1 4.1080 -3.5415 -1.6359 29 8 5.8659 -3.9030 -0.6118 30 6 4.2348 -2.2634 0.0964 31 1 -0.4849 0.8402 -0.0004 32 1 2.9910 0.3486 -1.7558 33 1 4.5584 0.3807 -0.9102 34 1 4.9240 -0.2960 -3.2388 35 1 3.6986 -1.5792 -3.0901 36 1 5.8533 -3.5383 -3.4104 37 1 7.1234 -2.9873 -5.7223 38 1 8.2665 -3.7506 -4.5915 39 1 8.7718 -0.9365 -5.8079 40 1 10.3878 -3.4469 -5.2624 41 1 11.6604 -2.0112 -7.0644 42 1 10.9298 -0.5729 -6.3123 43 1 11.6737 0.2060 -4.1389 44 1 13.5141 0.2865 -2.5050 45 1 15.3127 -1.3929 -2.5928 46 1 15.2652 -3.1592 -4.3078 47 1 13.4189 -3.2463 -5.9347 48 1 5.5214 -4.5814 -0.0151 49 1 3.6837 -2.9768 0.7091 50 1 5.0118 -1.7900 0.6966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099881404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:31 Heat of formation + Delta-G solvation = -28.441723 kcal Electronic energy + Delta-G solvation = -29276.840449 eV Core-core repulsion = 25269.497733 eV Total energy + Delta-G solvation = -4007.342716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.93295 -39.50512 -38.22032 -35.81645 -35.65813 -34.38208 -32.69305 -32.03160 -31.10631 -30.43725 -29.39620 -28.71744 -25.81021 -24.64180 -22.80328 -22.77144 -22.11700 -21.44376 -20.33882 -19.90097 -19.56792 -17.36144 -17.04646 -16.84594 -16.61677 -16.19566 -15.53480 -15.44239 -15.32860 -14.95358 -14.55362 -14.31948 -14.07871 -13.92358 -13.64099 -13.53016 -13.41468 -13.21499 -12.90836 -12.76285 -12.50605 -12.32572 -12.17652 -11.99266 -11.92060 -11.57251 -11.48704 -11.29096 -11.19609 -11.16396 -11.01679 -10.23184 -10.16504 -10.01337 -9.89049 -9.70514 -9.55222 -9.20750 -9.14025 -8.90036 -8.79649 -8.67207 -7.09084 -6.02166 -3.40044 1.10501 1.17989 2.01711 2.78714 3.30273 3.36886 3.46851 3.50496 3.56335 4.27813 4.47860 4.50897 4.62120 4.64132 4.78439 4.80575 4.89437 4.90597 5.01274 5.11153 5.14898 5.22752 5.28606 5.31878 5.33199 5.39746 5.45045 5.53690 5.55948 5.61144 5.74373 5.79428 5.81354 5.82639 6.03007 6.22271 6.22916 6.28523 6.29703 6.37211 6.38433 6.47236 6.50481 6.56617 6.60580 6.71411 6.79018 6.79079 7.66219 7.75596 7.89702 8.24026 8.38592 8.83551 9.63177 9.98568 11.13142 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002053 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.341285 B =13633.936283 C =13911.524996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.026 3.974 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.269 1.269 7 C -0.266 4.266 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.126 3.874 11 C -0.140 4.140 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.718 5.718 15 C 0.514 3.486 16 O -0.540 6.540 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.155 4.155 20 C -0.050 4.050 21 C -0.076 4.076 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.080 3.920 28 H 0.061 0.939 29 O -0.570 6.570 30 C 0.124 3.876 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.376 0.624 49 H 0.069 0.931 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.007 -8.548 -12.230 28.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.394 4.394 8 H 0.104 0.896 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.368 5.368 15 C 0.300 3.700 16 O -0.417 6.417 17 C -0.152 4.152 18 C -0.144 4.144 19 C -0.173 4.173 20 C -0.087 4.087 21 C -0.076 4.076 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.137 4.137 27 C 0.019 3.981 28 H 0.079 0.921 29 O -0.374 6.374 30 C -0.004 4.004 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.222 0.778 49 H 0.088 0.912 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 24.509 -7.296 -12.318 28.384 hybrid contribution -0.212 0.163 0.350 0.441 sum 24.297 -7.132 -11.968 28.008 Atomic orbital electron populations 1.69832 1.05718 1.26721 1.52449 1.25268 0.95242 0.97666 0.99138 0.86981 0.80126 0.84524 0.77233 1.21431 1.22969 1.19416 1.18877 0.84633 0.94880 1.40977 0.89577 1.44319 1.08552 1.33127 1.46681 1.21385 0.97486 0.92064 0.89084 1.22414 0.97362 0.98564 0.99667 1.20920 0.94839 0.92597 0.85855 0.89428 1.46063 1.34348 1.22043 1.34319 1.20491 0.79630 0.86264 0.83614 1.90700 1.63524 1.20706 1.66787 1.20763 0.98195 0.99329 0.96945 1.22422 0.93476 0.99565 0.98918 1.22631 0.93471 0.99687 1.01555 1.19669 0.92429 1.00191 0.96410 1.19805 0.95509 0.95329 0.96954 1.21140 0.98330 0.98552 0.94852 1.21189 0.94530 0.99052 0.98800 1.21153 0.98941 0.95512 0.98874 1.21122 0.98554 0.98639 0.95637 1.21041 0.94439 0.98736 0.99513 1.22729 0.89225 0.90125 0.96056 0.92112 1.86480 1.37694 1.45246 1.67994 1.21547 0.93123 0.92401 0.93284 0.92633 0.90367 0.95163 0.91499 0.91317 0.76881 0.88068 0.88686 0.86619 0.87334 0.90182 0.90430 0.85896 0.86062 0.86264 0.86226 0.86178 0.77757 0.91210 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.97 55.49 0.78 -26.47 16 2 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 3 Si 0.88 22.35 24.34 -169.99 -4.14 18.21 16 4 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.78 6.64 56.52 0.38 -6.41 16 7 C -0.27 -7.22 10.03 -15.06 -0.15 -7.37 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 9 N -0.60 -13.93 2.77 -172.32 -0.48 -14.41 16 10 C 0.13 2.77 4.21 -3.71 -0.02 2.75 16 11 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 12 C 0.16 2.72 2.12 -67.89 -0.14 2.57 16 13 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 14 N -0.72 -9.79 4.92 -53.76 -0.26 -10.06 16 15 C 0.51 7.29 7.79 -10.99 -0.09 7.20 16 16 O -0.54 -9.93 15.70 5.56 0.09 -9.84 16 17 C -0.11 -1.09 6.14 -29.04 -0.18 -1.27 16 18 C -0.13 -1.29 8.36 -36.03 -0.30 -1.59 16 19 C -0.16 -1.42 9.10 -36.03 -0.33 -1.75 16 20 C -0.05 -0.41 5.79 -29.04 -0.17 -0.58 16 21 C -0.08 -0.73 5.12 -104.63 -0.54 -1.26 16 22 C -0.11 -1.15 9.70 -39.58 -0.38 -1.53 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 27 C 0.08 1.26 3.14 -26.61 -0.08 1.18 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -7.89 13.16 -35.23 -0.46 -8.35 16 30 C 0.12 2.34 6.14 -3.72 -0.02 2.32 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.08 1.87 4.50 -51.93 -0.23 1.63 16 33 H 0.03 0.68 7.07 -51.93 -0.37 0.31 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.33 8.60 -40.82 -0.35 3.97 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.77 7.79 -51.93 -0.40 0.37 16 39 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16 40 H 0.11 0.92 7.84 -52.48 -0.41 0.51 16 41 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.38 3.65 9.08 45.56 0.41 4.06 16 49 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 50 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -34.04 405.01 -9.83 -43.87 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.23 Total: 8.16 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.22 Total: -7.21 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.03 Total: -50.94 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.38 Total: -18.19 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.04 -9.83 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099881404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.424 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds