Wall clock time and date at job start Wed Apr 1 2020 03:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00208 * 2 1 4 4 H 1.48500 * 109.46953 * 272.89624 * 3 2 1 5 5 H 1.48493 * 109.47232 * 32.90094 * 3 2 1 6 6 H 1.48500 * 109.47067 * 152.90210 * 3 2 1 7 7 C 1.38810 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00598 * 339.36236 * 7 2 1 9 9 N 1.36942 * 120.00175 * 159.36426 * 7 2 1 10 10 C 1.46929 * 120.62496 * 332.60302 * 9 7 2 11 11 C 1.53198 * 108.76052 * 233.63539 * 10 9 7 12 12 C 1.53042 * 109.31243 * 305.34482 * 11 10 9 13 13 H 1.09001 * 109.46020 * 301.37503 * 12 11 10 14 14 N 1.46502 * 109.45969 * 181.40165 * 12 11 10 15 15 C 1.34777 * 120.00073 * 84.96906 * 14 12 11 16 16 O 1.21278 * 120.00130 * 0.02562 * 15 14 12 17 17 C 1.50700 * 120.00056 * 179.97438 * 15 14 12 18 18 C 1.50699 * 109.47212 * 180.02562 * 17 15 14 19 19 C 1.30996 * 120.00362 * 125.00058 * 18 17 15 20 20 C 1.50699 * 120.00362 * 180.02562 * 19 18 17 21 21 C 1.50690 * 109.47231 * 125.00032 * 20 19 18 22 22 C 1.38230 * 120.00116 * 269.73023 * 21 20 19 23 23 C 1.38245 * 120.00320 * 179.74666 * 22 21 20 24 24 C 1.38233 * 119.99320 * 0.54564 * 23 22 21 25 25 C 1.38234 * 120.00608 * 359.70338 * 24 23 22 26 26 C 1.38236 * 119.99673 * 0.02562 * 25 24 23 27 27 C 1.53039 * 109.52673 * 61.38585 * 12 11 10 28 28 H 1.08996 * 109.49574 * 58.61443 * 27 12 11 29 29 O 1.42903 * 109.49634 * 178.67409 * 27 12 11 30 30 C 1.46921 * 120.63593 * 152.62108 * 9 7 2 31 31 H 0.97007 * 119.99388 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.58806 * 353.41354 * 10 9 7 33 33 H 1.08999 * 109.59019 * 113.69935 * 10 9 7 34 34 H 1.08998 * 109.48284 * 185.40251 * 11 10 9 35 35 H 1.08994 * 109.50677 * 65.30465 * 11 10 9 36 36 H 0.96998 * 119.99650 * 264.97661 * 14 12 11 37 37 H 1.09005 * 109.46812 * 60.00013 * 17 15 14 38 38 H 1.09000 * 109.47157 * 300.00515 * 17 15 14 39 39 H 1.08001 * 119.99862 * 304.99687 * 18 17 15 40 40 H 1.08008 * 119.99727 * 0.02562 * 19 18 17 41 41 H 1.08999 * 109.46786 * 245.00277 * 20 19 18 42 42 H 1.08997 * 109.46747 * 4.99822 * 20 19 18 43 43 H 1.07995 * 120.00321 * 359.97438 * 22 21 20 44 44 H 1.07992 * 120.00386 * 180.27281 * 23 22 21 45 45 H 1.08007 * 119.99737 * 179.73015 * 24 23 22 46 46 H 1.07997 * 120.00648 * 179.97438 * 25 24 23 47 47 H 1.07999 * 120.00350 * 179.97438 * 26 25 24 48 48 H 0.96701 * 113.99566 * 179.97438 * 29 27 12 49 49 H 1.09001 * 109.58508 * 6.58526 * 30 9 7 50 50 H 1.08998 * 109.70480 * 246.23079 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4365 2.0817 -1.3983 5 1 1.4798 2.6341 0.7605 6 1 3.5771 1.4231 0.6378 7 6 2.0101 -1.2022 0.0005 8 1 1.5221 -2.1074 0.3306 9 7 3.3137 -1.2406 -0.4174 10 6 3.8175 -0.2599 -1.3886 11 6 4.4616 -1.0109 -2.5582 12 6 5.5283 -1.9671 -2.0198 13 1 6.2777 -1.4009 -1.4666 14 7 6.1696 -2.6627 -3.1384 15 6 7.1990 -2.0858 -3.7895 16 8 7.5948 -0.9911 -3.4492 17 6 7.8591 -2.8015 -4.9398 18 6 8.9733 -1.9485 -5.4893 19 6 10.1864 -2.4346 -5.5806 20 6 11.3007 -1.5814 -6.1296 21 6 12.4302 -1.5285 -5.1335 22 6 12.4598 -0.5336 -4.1743 23 6 13.4933 -0.4881 -3.2572 24 6 14.5030 -1.4310 -3.3065 25 6 14.4762 -2.4229 -4.2690 26 6 13.4398 -2.4716 -5.1825 27 6 4.8744 -2.9916 -1.0898 28 1 4.1080 -3.5415 -1.6359 29 8 5.8659 -3.9030 -0.6118 30 6 4.2348 -2.2634 0.0964 31 1 -0.4849 0.8402 -0.0004 32 1 2.9910 0.3486 -1.7558 33 1 4.5584 0.3807 -0.9102 34 1 4.9240 -0.2960 -3.2388 35 1 3.6986 -1.5792 -3.0901 36 1 5.8533 -3.5383 -3.4104 37 1 7.1234 -2.9873 -5.7223 38 1 8.2665 -3.7506 -4.5915 39 1 8.7718 -0.9365 -5.8079 40 1 10.3878 -3.4469 -5.2624 41 1 11.6604 -2.0112 -7.0644 42 1 10.9298 -0.5729 -6.3123 43 1 11.6737 0.2060 -4.1389 44 1 13.5141 0.2865 -2.5050 45 1 15.3127 -1.3929 -2.5928 46 1 15.2652 -3.1592 -4.3078 47 1 13.4189 -3.2463 -5.9347 48 1 5.5214 -4.5814 -0.0151 49 1 3.6837 -2.9768 0.7091 50 1 5.0118 -1.7900 0.6966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099881404.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:29 Heat of formation + Delta-G solvation = -51.786231 kcal Electronic energy + Delta-G solvation = -29277.852743 eV Core-core repulsion = 25269.497733 eV Total energy + Delta-G solvation = -4008.355010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.14906 -40.17835 -39.58018 -37.13507 -36.57548 -35.71971 -34.05472 -33.36377 -31.96972 -31.75953 -30.80214 -29.68315 -27.12829 -25.88065 -24.30821 -23.72384 -23.46221 -22.23205 -21.55257 -21.20288 -20.40357 -19.02209 -18.07353 -17.99323 -17.70051 -17.62688 -16.80817 -16.39782 -16.22923 -16.07594 -16.03830 -15.51579 -15.42204 -15.00646 -14.69105 -14.58793 -14.55088 -14.28341 -14.04908 -14.04184 -13.85521 -13.72552 -13.45291 -13.20380 -12.97994 -12.78919 -12.78420 -12.64219 -12.19437 -12.17548 -11.94312 -11.90341 -11.80678 -11.66088 -11.47583 -11.17786 -10.98433 -10.68128 -10.06217 -9.93373 -9.81714 -9.58171 -9.03513 -8.21260 -5.54353 0.43324 0.50161 1.26281 1.27271 1.38151 1.45826 1.70324 2.28708 2.36548 2.88891 2.90301 3.10380 3.34040 3.75748 3.81106 3.89757 3.97913 4.00279 4.03725 4.08502 4.17520 4.22411 4.25908 4.29533 4.30852 4.45358 4.54943 4.55779 4.64994 4.67367 4.70189 4.76510 4.80539 4.83896 4.87205 4.89614 4.96504 5.01036 5.16627 5.18042 5.23590 5.48732 5.57506 5.63266 5.68574 5.74729 5.79766 5.90311 6.08118 6.14353 6.62208 6.77547 6.90492 7.32830 7.54020 7.94303 8.97664 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.002053 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.341285 B =13633.936283 C =13911.524996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.027 4.027 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.308 1.308 6 H -0.269 1.269 7 C -0.247 4.247 8 H 0.066 0.934 9 N -0.613 5.613 10 C 0.122 3.878 11 C -0.127 4.127 12 C 0.167 3.833 13 H 0.060 0.940 14 N -0.706 5.706 15 C 0.508 3.492 16 O -0.588 6.588 17 C -0.100 4.100 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.050 4.050 21 C -0.086 4.086 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.124 4.124 27 C 0.101 3.899 28 H 0.073 0.927 29 O -0.568 6.568 30 C 0.118 3.882 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.138 0.862 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.397 0.603 49 H 0.078 0.922 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.409 -10.953 -13.591 31.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.222 4.222 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.236 1.236 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.339 5.339 10 C -0.003 4.003 11 C -0.167 4.167 12 C 0.062 3.938 13 H 0.078 0.922 14 N -0.357 5.357 15 C 0.297 3.703 16 O -0.468 6.468 17 C -0.140 4.140 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.087 4.087 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.141 4.141 27 C 0.040 3.960 28 H 0.091 0.909 29 O -0.376 6.376 30 C -0.008 4.008 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.145 0.855 45 H 0.156 0.844 46 H 0.162 0.838 47 H 0.161 0.839 48 H 0.247 0.753 49 H 0.097 0.903 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 26.948 -9.761 -13.693 31.764 hybrid contribution -0.849 0.814 0.811 1.429 sum 26.099 -8.946 -12.882 30.449 Atomic orbital electron populations 1.69930 1.07029 1.27189 1.55267 1.25790 0.95750 1.00382 1.00302 0.86117 0.78700 0.81324 0.77501 1.20423 1.23646 1.19363 1.18877 0.86120 0.93863 1.38803 0.91652 1.44404 1.07946 1.34192 1.47326 1.21345 0.96696 0.92183 0.90123 1.22218 0.97761 0.98700 0.98018 1.20593 0.93677 0.92684 0.86873 0.92172 1.45882 1.34062 1.22529 1.33271 1.21347 0.79110 0.85782 0.84078 1.90688 1.64860 1.23031 1.68256 1.20772 0.98299 0.99264 0.95617 1.22418 0.94383 0.99317 1.00428 1.22785 0.93050 1.00142 1.00171 1.19709 0.91985 0.99996 0.97025 1.19973 0.96294 0.95433 0.96943 1.21246 0.98759 0.99281 0.96121 1.21393 0.94892 0.99856 0.99051 1.21452 0.99087 0.95286 0.99479 1.21491 0.99007 0.98774 0.95029 1.21349 0.93969 0.98829 0.99991 1.22282 0.89424 0.89948 0.94392 0.90933 1.86455 1.37099 1.45410 1.68609 1.21754 0.92457 0.91705 0.94860 0.92829 0.92433 0.95780 0.91431 0.90623 0.74821 0.85301 0.86264 0.88221 0.86070 0.88069 0.91137 0.87055 0.85491 0.84409 0.83797 0.83921 0.75295 0.90343 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 13.97 21.65 0.30 -58.07 16 2 C -0.03 -1.53 5.23 84.86 0.44 -1.09 16 3 Si 0.93 47.04 24.34 68.60 1.67 48.71 16 4 H -0.28 -13.38 6.62 99.48 0.66 -12.72 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.27 -13.32 6.64 99.48 0.66 -12.66 16 7 C -0.25 -13.52 10.03 84.03 0.84 -12.68 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 9 N -0.61 -28.09 2.77 -699.10 -1.94 -30.03 16 10 C 0.12 5.34 4.21 86.36 0.36 5.70 16 11 C -0.13 -4.51 5.65 30.67 0.17 -4.34 16 12 C 0.17 5.35 2.12 45.02 0.10 5.45 16 13 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 14 N -0.71 -17.53 4.92 -442.40 -2.18 -19.71 16 15 C 0.51 13.53 7.79 87.66 0.68 14.22 16 16 O -0.59 -21.54 15.70 -3.02 -0.05 -21.59 16 17 C -0.10 -1.66 6.14 29.10 0.18 -1.48 16 18 C -0.15 -2.80 8.36 25.65 0.21 -2.59 16 19 C -0.14 -2.34 9.10 25.65 0.23 -2.10 16 20 C -0.05 -0.77 5.79 29.10 0.17 -0.60 16 21 C -0.09 -1.56 5.12 -19.87 -0.10 -1.66 16 22 C -0.14 -2.86 9.70 22.27 0.22 -2.65 16 23 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 24 C -0.14 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 26 C -0.12 -1.84 9.70 22.27 0.22 -1.62 16 27 C 0.10 2.94 3.14 30.67 0.10 3.04 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 O -0.57 -13.88 13.16 -148.98 -1.96 -15.84 16 30 C 0.12 4.32 6.14 86.36 0.53 4.85 16 31 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 32 H 0.06 2.75 4.50 -2.39 -0.01 2.74 16 33 H 0.02 1.08 7.07 -2.39 -0.02 1.07 16 34 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.42 7.50 8.60 -92.71 -0.80 6.70 16 37 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.12 1.43 7.79 -2.39 -0.02 1.42 16 39 H 0.10 2.20 7.84 -2.91 -0.02 2.18 16 40 H 0.12 1.67 7.84 -2.91 -0.02 1.65 16 41 H 0.10 1.10 8.09 -2.39 -0.02 1.08 16 42 H 0.07 1.16 7.73 -2.39 -0.02 1.14 16 43 H 0.11 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 47 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 48 H 0.40 6.23 9.08 -74.06 -0.67 5.56 16 49 H 0.08 2.70 7.93 -2.39 -0.02 2.68 16 50 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -75.42 405.01 0.26 -75.16 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.62 Total: 24.75 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.03 Total: -3.39 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -3.81 Total: -107.81 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -2.01 Total: -37.42 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -75.42 0.26 -75.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099881404.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.371 kcal (2) G-P(sol) polarization free energy of solvation -75.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds