Wall clock time and date at job start Wed Apr 1 2020 03:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47120 * 266.01882 * 3 2 1 5 5 H 1.48500 * 109.47570 * 26.01787 * 3 2 1 6 6 H 1.48505 * 109.47244 * 146.01966 * 3 2 1 7 7 C 1.38805 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99811 * 338.72332 * 7 2 1 9 9 N 1.36939 * 120.00218 * 158.73169 * 7 2 1 10 10 C 1.46926 * 120.62879 * 329.19208 * 9 7 2 11 11 C 1.53183 * 108.77505 * 233.62943 * 10 9 7 12 12 C 1.53041 * 109.31715 * 305.36480 * 11 10 9 13 13 H 1.09002 * 109.44577 * 301.35432 * 12 11 10 14 14 N 1.46500 * 109.46331 * 181.38808 * 12 11 10 15 15 C 1.34769 * 119.99961 * 84.76974 * 14 12 11 16 16 O 1.21283 * 120.00488 * 354.97698 * 15 14 12 17 17 C 1.50705 * 120.00099 * 174.97581 * 15 14 12 18 18 C 1.52998 * 115.55085 * 65.78681 * 17 15 14 19 19 C 1.50708 * 109.46840 * 65.43517 * 18 17 15 20 20 C 1.38234 * 119.99908 * 265.73349 * 19 18 17 21 21 C 1.38237 * 119.99646 * 180.30256 * 20 19 18 22 22 C 1.38229 * 120.00006 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00347 * 0.02562 * 22 21 20 24 24 C 1.38229 * 119.99687 * 86.01091 * 19 18 17 25 25 C 1.52998 * 117.50119 * 211.46199 * 17 15 14 26 26 C 1.52998 * 117.49767 * 280.12295 * 17 15 14 27 27 C 1.53042 * 109.53430 * 61.36259 * 12 11 10 28 28 H 1.09003 * 109.49274 * 58.62729 * 27 12 11 29 29 O 1.42902 * 109.49485 * 178.68638 * 27 12 11 30 30 C 1.46926 * 120.63174 * 149.21499 * 9 7 2 31 31 H 0.97004 * 120.00225 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58529 * 353.42088 * 10 9 7 33 33 H 1.08999 * 109.58513 * 113.69880 * 10 9 7 34 34 H 1.09007 * 109.49499 * 185.41500 * 11 10 9 35 35 H 1.08992 * 109.49935 * 65.32043 * 11 10 9 36 36 H 0.96994 * 119.99826 * 264.77231 * 14 12 11 37 37 H 1.09000 * 109.47406 * 305.43938 * 18 17 15 38 38 H 1.08998 * 109.47491 * 185.43851 * 18 17 15 39 39 H 1.08000 * 120.00007 * 0.27697 * 20 19 18 40 40 H 1.07997 * 119.99913 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.99938 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00007 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.00288 * 359.72314 * 24 19 18 44 44 H 1.08999 * 117.49969 * 215.00337 * 25 17 15 45 45 H 1.08998 * 117.49678 * 0.02562 * 25 17 15 46 46 H 1.08999 * 117.49998 * 359.97438 * 26 17 15 47 47 H 1.08999 * 117.49823 * 144.97044 * 26 17 15 48 48 H 0.96696 * 113.99907 * 185.44639 * 29 27 12 49 49 H 1.08994 * 109.58673 * 6.58061 * 30 9 7 50 50 H 1.09001 * 109.58803 * 246.15559 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5818 1.9978 -1.3967 5 1 1.4081 2.6756 0.6141 6 1 3.5031 1.4660 0.7825 7 6 2.0102 -1.2021 -0.0005 8 1 1.5253 -2.1057 0.3385 9 7 3.3096 -1.2424 -0.4307 10 6 3.7846 -0.3141 -1.4658 11 6 4.4303 -1.1232 -2.5950 12 6 5.5203 -2.0255 -2.0119 13 1 6.2647 -1.4129 -1.5032 14 7 6.1625 -2.7764 -3.0934 15 6 7.1714 -2.2205 -3.7931 16 8 7.4873 -1.0674 -3.5896 17 6 7.9070 -3.0317 -4.8284 18 6 7.0812 -3.4534 -6.0454 19 6 6.6802 -2.2299 -6.8286 20 6 5.4546 -1.6332 -6.5989 21 6 5.0842 -0.5147 -7.3218 22 6 5.9395 0.0074 -8.2739 23 6 7.1651 -0.5893 -8.5037 24 6 7.5355 -1.7078 -7.7808 25 6 9.3866 -2.7142 -5.0543 26 6 8.9812 -4.0021 -4.3331 27 6 4.8957 -3.0028 -1.0134 28 1 4.1339 -3.5989 -1.5160 29 8 5.9092 -3.8650 -0.4924 30 6 4.2552 -2.2150 0.1337 31 1 -0.4851 0.8401 -0.0004 32 1 2.9430 0.2557 -1.8596 33 1 4.5184 0.3678 -1.0362 34 1 4.8721 -0.4430 -3.3232 35 1 3.6725 -1.7365 -3.0824 36 1 5.8617 -3.6737 -3.3060 37 1 6.1873 -3.9810 -5.7128 38 1 7.6768 -4.1111 -6.6785 39 1 4.7863 -2.0412 -5.8550 40 1 4.1268 -0.0482 -7.1420 41 1 5.6502 0.8816 -8.8384 42 1 7.8335 -0.1811 -9.2473 43 1 8.4931 -2.1741 -7.9603 44 1 9.7716 -2.8056 -6.0699 45 1 9.8280 -1.9189 -4.4538 46 1 9.1561 -4.0535 -3.2584 47 1 9.0993 -4.9410 -4.8740 48 1 5.5723 -4.5646 0.0839 49 1 3.7242 -2.8994 0.7952 50 1 5.0294 -1.6898 0.6931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099882391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:45 Heat of formation + Delta-G solvation = -14.077373 kcal Electronic energy + Delta-G solvation = -31277.204047 eV Core-core repulsion = 27270.484216 eV Total energy + Delta-G solvation = -4006.719831 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.47337 -39.20143 -38.36275 -36.67528 -35.64065 -34.37883 -32.46172 -32.05503 -30.94274 -30.29289 -29.19485 -27.44579 -25.44556 -23.42436 -22.80015 -22.71297 -22.45367 -21.75336 -21.34243 -20.03505 -19.15384 -17.36460 -17.09477 -16.72446 -16.51463 -16.10925 -15.47133 -15.33307 -15.21061 -14.93686 -14.50683 -14.39219 -14.02514 -13.82128 -13.47497 -13.41210 -13.20577 -13.01570 -12.80345 -12.48799 -12.47359 -12.30580 -12.25530 -12.00844 -11.72703 -11.53191 -11.45191 -11.13699 -11.10081 -10.98261 -10.69073 -10.30974 -10.27232 -10.12622 -9.93884 -9.91933 -9.60250 -9.50036 -8.96072 -8.78848 -8.75379 -8.62356 -7.04103 -6.03463 -3.42882 1.27722 1.35934 2.72604 3.19134 3.31301 3.46851 3.51189 3.52056 3.75356 4.27284 4.40730 4.48811 4.54711 4.67245 4.71853 4.82270 4.91441 4.94725 4.98245 5.06538 5.14821 5.28667 5.33331 5.38537 5.40543 5.42588 5.47640 5.57609 5.61387 5.65084 5.71708 5.75271 5.82171 5.93770 5.96307 5.98335 6.05022 6.23699 6.31255 6.39233 6.41714 6.47221 6.52325 6.53257 6.62897 6.73729 6.80153 6.94793 7.68994 7.77003 7.92390 8.25243 8.41214 8.84786 9.63266 10.00509 11.12002 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.003623 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.858232 B = 7726.980416 C = 9333.429319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.032 3.968 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.268 4.268 8 H 0.085 0.915 9 N -0.601 5.601 10 C 0.128 3.872 11 C -0.139 4.139 12 C 0.164 3.836 13 H 0.085 0.915 14 N -0.712 5.712 15 C 0.552 3.448 16 O -0.535 6.535 17 C -0.152 4.152 18 C -0.037 4.037 19 C -0.080 4.080 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.157 4.157 27 C 0.080 3.920 28 H 0.061 0.939 29 O -0.569 6.569 30 C 0.124 3.876 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.397 0.603 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.375 0.625 49 H 0.069 0.931 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 -9.639 -14.715 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.168 4.168 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.396 4.396 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.002 3.998 11 C -0.179 4.179 12 C 0.060 3.940 13 H 0.104 0.896 14 N -0.361 5.361 15 C 0.337 3.663 16 O -0.411 6.411 17 C -0.155 4.155 18 C -0.074 4.074 19 C -0.080 4.080 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.130 4.130 25 C -0.180 4.180 26 C -0.194 4.194 27 C 0.020 3.980 28 H 0.079 0.921 29 O -0.374 6.374 30 C -0.004 4.004 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.222 0.778 49 H 0.088 0.912 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 16.495 -8.319 -14.862 23.710 hybrid contribution -0.209 0.313 0.291 0.476 sum 16.286 -8.005 -14.571 23.272 Atomic orbital electron populations 1.69837 1.05802 1.26828 1.52028 1.25327 0.95170 0.97647 0.98678 0.87044 0.79882 0.84502 0.77800 1.21028 1.22836 1.19725 1.18842 0.85059 0.94741 1.40993 0.89785 1.44323 1.08308 1.38724 1.41300 1.21389 0.97704 0.92211 0.88482 1.22409 0.97076 0.98888 0.99566 1.20927 0.94867 0.92309 0.85906 0.89645 1.45954 1.35597 1.19198 1.35340 1.19338 0.79558 0.86635 0.80736 1.90702 1.66470 1.17090 1.66850 1.21412 0.91860 1.04460 0.97753 1.20076 0.99633 0.94703 0.93034 1.19708 0.94483 0.97186 0.96648 1.21080 0.96205 0.96188 0.99080 1.21175 0.99868 0.96175 0.96042 1.21137 0.94578 0.99889 0.98539 1.21088 0.96690 0.96276 0.99926 1.20935 0.98910 0.96783 0.96367 1.22966 0.93952 0.99065 1.02060 1.23126 1.00408 0.94374 1.01524 1.22720 0.88861 0.91154 0.95309 0.92146 1.86476 1.36255 1.45947 1.68678 1.21550 0.92792 0.92717 0.93301 0.92588 0.90219 0.95549 0.91382 0.91424 0.76949 0.90231 0.89931 0.86210 0.86001 0.86313 0.86330 0.86435 0.88151 0.87932 0.88166 0.87878 0.77805 0.91234 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.97 55.49 0.78 -26.35 16 2 C 0.03 0.90 5.18 -17.43 -0.09 0.81 16 3 Si 0.88 22.36 24.54 -169.99 -4.17 18.18 16 4 H -0.28 -6.95 6.40 56.52 0.36 -6.59 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.27 -7.28 9.99 -15.06 -0.15 -7.43 16 8 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 9 N -0.60 -13.90 2.71 -172.33 -0.47 -14.37 16 10 C 0.13 2.82 4.23 -3.72 -0.02 2.81 16 11 C -0.14 -2.55 5.65 -26.62 -0.15 -2.70 16 12 C 0.16 2.75 2.08 -67.89 -0.14 2.60 16 13 H 0.09 1.66 7.66 -51.93 -0.40 1.26 16 14 N -0.71 -9.86 4.92 -53.76 -0.26 -10.13 16 15 C 0.55 8.16 6.56 -10.99 -0.07 8.09 16 16 O -0.53 -10.25 16.35 5.55 0.09 -10.16 16 17 C -0.15 -1.64 1.89 -155.66 -0.29 -1.93 16 18 C -0.04 -0.34 5.22 -27.88 -0.15 -0.48 16 19 C -0.08 -0.90 4.86 -104.62 -0.51 -1.41 16 20 C -0.11 -1.34 9.51 -39.58 -0.38 -1.72 16 21 C -0.11 -1.39 10.05 -39.59 -0.40 -1.79 16 22 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.11 -1.17 9.72 -39.59 -0.38 -1.55 16 25 C -0.14 -1.42 9.78 -26.69 -0.26 -1.68 16 26 C -0.16 -1.37 9.93 -26.69 -0.26 -1.63 16 27 C 0.08 1.26 3.14 -26.61 -0.08 1.18 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 O -0.57 -7.73 13.14 -35.23 -0.46 -8.19 16 30 C 0.12 2.34 6.17 -3.71 -0.02 2.32 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.08 1.91 4.84 -51.93 -0.25 1.66 16 33 H 0.03 0.60 7.33 -51.93 -0.38 0.22 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 4.55 8.60 -40.82 -0.35 4.20 16 37 H 0.08 0.66 8.06 -51.93 -0.42 0.25 16 38 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.97 7.94 -52.48 -0.42 0.55 16 44 H 0.10 0.79 8.02 -51.93 -0.42 0.37 16 45 H 0.10 1.20 8.00 -51.93 -0.42 0.79 16 46 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.38 3.54 9.12 45.56 0.42 3.96 16 49 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -33.73 403.20 -9.86 -43.59 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.28 Total: 9.27 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -4.15 Total: -7.93 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.04 Total: -50.85 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.37 Total: -18.35 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.17 Total: 18.18 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.73 -9.86 -43.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099882391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.515 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds