Wall clock time and date at job start Wed Apr 1 2020 03:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47120 * 266.01882 * 3 2 1 5 5 H 1.48500 * 109.47570 * 26.01787 * 3 2 1 6 6 H 1.48505 * 109.47244 * 146.01966 * 3 2 1 7 7 C 1.38805 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99811 * 338.72332 * 7 2 1 9 9 N 1.36939 * 120.00218 * 158.73169 * 7 2 1 10 10 C 1.46926 * 120.62879 * 329.19208 * 9 7 2 11 11 C 1.53183 * 108.77505 * 233.62943 * 10 9 7 12 12 C 1.53041 * 109.31715 * 305.36480 * 11 10 9 13 13 H 1.09002 * 109.44577 * 301.35432 * 12 11 10 14 14 N 1.46500 * 109.46331 * 181.38808 * 12 11 10 15 15 C 1.34769 * 119.99961 * 84.76974 * 14 12 11 16 16 O 1.21283 * 120.00488 * 354.97698 * 15 14 12 17 17 C 1.50705 * 120.00099 * 174.97581 * 15 14 12 18 18 C 1.52998 * 115.55085 * 65.78681 * 17 15 14 19 19 C 1.50708 * 109.46840 * 65.43517 * 18 17 15 20 20 C 1.38234 * 119.99908 * 265.73349 * 19 18 17 21 21 C 1.38237 * 119.99646 * 180.30256 * 20 19 18 22 22 C 1.38229 * 120.00006 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00347 * 0.02562 * 22 21 20 24 24 C 1.38229 * 119.99687 * 86.01091 * 19 18 17 25 25 C 1.52998 * 117.50119 * 211.46199 * 17 15 14 26 26 C 1.52998 * 117.49767 * 280.12295 * 17 15 14 27 27 C 1.53042 * 109.53430 * 61.36259 * 12 11 10 28 28 H 1.09003 * 109.49274 * 58.62729 * 27 12 11 29 29 O 1.42902 * 109.49485 * 178.68638 * 27 12 11 30 30 C 1.46926 * 120.63174 * 149.21499 * 9 7 2 31 31 H 0.97004 * 120.00225 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.58529 * 353.42088 * 10 9 7 33 33 H 1.08999 * 109.58513 * 113.69880 * 10 9 7 34 34 H 1.09007 * 109.49499 * 185.41500 * 11 10 9 35 35 H 1.08992 * 109.49935 * 65.32043 * 11 10 9 36 36 H 0.96994 * 119.99826 * 264.77231 * 14 12 11 37 37 H 1.09000 * 109.47406 * 305.43938 * 18 17 15 38 38 H 1.08998 * 109.47491 * 185.43851 * 18 17 15 39 39 H 1.08000 * 120.00007 * 0.27697 * 20 19 18 40 40 H 1.07997 * 119.99913 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.99938 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.00007 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.00288 * 359.72314 * 24 19 18 44 44 H 1.08999 * 117.49969 * 215.00337 * 25 17 15 45 45 H 1.08998 * 117.49678 * 0.02562 * 25 17 15 46 46 H 1.08999 * 117.49998 * 359.97438 * 26 17 15 47 47 H 1.08999 * 117.49823 * 144.97044 * 26 17 15 48 48 H 0.96696 * 113.99907 * 185.44639 * 29 27 12 49 49 H 1.08994 * 109.58673 * 6.58061 * 30 9 7 50 50 H 1.09001 * 109.58803 * 246.15559 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5818 1.9978 -1.3967 5 1 1.4081 2.6756 0.6141 6 1 3.5031 1.4660 0.7825 7 6 2.0102 -1.2021 -0.0005 8 1 1.5253 -2.1057 0.3385 9 7 3.3096 -1.2424 -0.4307 10 6 3.7846 -0.3141 -1.4658 11 6 4.4303 -1.1232 -2.5950 12 6 5.5203 -2.0255 -2.0119 13 1 6.2647 -1.4129 -1.5032 14 7 6.1625 -2.7764 -3.0934 15 6 7.1714 -2.2205 -3.7931 16 8 7.4873 -1.0674 -3.5896 17 6 7.9070 -3.0317 -4.8284 18 6 7.0812 -3.4534 -6.0454 19 6 6.6802 -2.2299 -6.8286 20 6 5.4546 -1.6332 -6.5989 21 6 5.0842 -0.5147 -7.3218 22 6 5.9395 0.0074 -8.2739 23 6 7.1651 -0.5893 -8.5037 24 6 7.5355 -1.7078 -7.7808 25 6 9.3866 -2.7142 -5.0543 26 6 8.9812 -4.0021 -4.3331 27 6 4.8957 -3.0028 -1.0134 28 1 4.1339 -3.5989 -1.5160 29 8 5.9092 -3.8650 -0.4924 30 6 4.2552 -2.2150 0.1337 31 1 -0.4851 0.8401 -0.0004 32 1 2.9430 0.2557 -1.8596 33 1 4.5184 0.3678 -1.0362 34 1 4.8721 -0.4430 -3.3232 35 1 3.6725 -1.7365 -3.0824 36 1 5.8617 -3.6737 -3.3060 37 1 6.1873 -3.9810 -5.7128 38 1 7.6768 -4.1111 -6.6785 39 1 4.7863 -2.0412 -5.8550 40 1 4.1268 -0.0482 -7.1420 41 1 5.6502 0.8816 -8.8384 42 1 7.8335 -0.1811 -9.2473 43 1 8.4931 -2.1741 -7.9603 44 1 9.7716 -2.8056 -6.0699 45 1 9.8280 -1.9189 -4.4538 46 1 9.1561 -4.0535 -3.2584 47 1 9.0993 -4.9410 -4.8740 48 1 5.5723 -4.5646 0.0839 49 1 3.7242 -2.8994 0.7952 50 1 5.0294 -1.6898 0.6931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099882391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:43 Heat of formation + Delta-G solvation = -37.471920 kcal Electronic energy + Delta-G solvation = -31278.218511 eV Core-core repulsion = 27270.484216 eV Total energy + Delta-G solvation = -4007.734295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.54157 -40.24844 -39.56500 -37.65433 -37.12308 -35.76687 -34.02915 -33.21074 -31.95163 -31.74882 -30.72619 -28.26528 -27.10303 -24.76975 -24.26706 -23.55911 -23.28694 -23.13290 -22.27666 -21.50040 -20.31665 -18.98087 -18.13123 -18.08407 -17.69588 -17.34664 -16.83959 -16.40351 -16.18968 -16.08355 -16.02173 -15.64800 -15.37625 -15.06145 -14.84204 -14.59256 -14.27631 -14.22478 -14.01900 -13.96125 -13.79178 -13.69569 -13.16471 -13.14708 -13.12846 -12.94813 -12.70058 -12.40598 -12.27348 -12.20387 -11.96205 -11.87486 -11.70800 -11.53081 -11.43993 -11.20149 -10.97688 -10.79323 -10.60492 -10.07030 -9.79473 -9.57850 -8.99583 -8.23814 -5.58443 0.46103 0.52383 1.25766 1.36421 1.44310 1.62301 2.09490 2.35946 2.71505 2.89171 2.93942 3.08395 3.33453 3.63275 3.74390 3.80401 3.85095 3.94574 3.97941 4.04294 4.08236 4.16328 4.22301 4.23101 4.28304 4.31644 4.54148 4.54921 4.64586 4.67080 4.77764 4.78665 4.80582 4.84237 4.86379 4.87726 4.97491 4.99859 5.01434 5.17606 5.20208 5.22480 5.24544 5.46728 5.58562 5.64405 5.71520 5.81508 6.08258 6.15511 6.59195 6.77964 6.91262 7.29411 7.52755 7.94938 8.95408 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.003623 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.858232 B = 7726.980416 C = 9333.429319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.017 4.017 3 Si 0.928 3.072 4 H -0.274 1.274 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.126 3.874 11 C -0.124 4.124 12 C 0.171 3.829 13 H 0.058 0.942 14 N -0.699 5.699 15 C 0.548 3.452 16 O -0.586 6.586 17 C -0.161 4.161 18 C -0.032 4.032 19 C -0.089 4.089 20 C -0.131 4.131 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.148 4.148 26 C -0.133 4.133 27 C 0.102 3.898 28 H 0.073 0.927 29 O -0.567 6.567 30 C 0.118 3.882 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.020 0.980 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.127 0.873 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.139 0.861 48 H 0.397 0.603 49 H 0.078 0.922 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.734 -12.018 -16.370 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.214 4.214 3 Si 0.757 3.243 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.338 5.338 10 C 0.001 3.999 11 C -0.164 4.164 12 C 0.065 3.935 13 H 0.077 0.923 14 N -0.349 5.349 15 C 0.336 3.664 16 O -0.465 6.465 17 C -0.164 4.164 18 C -0.069 4.069 19 C -0.089 4.089 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.185 4.185 26 C -0.170 4.170 27 C 0.041 3.959 28 H 0.091 0.909 29 O -0.374 6.374 30 C -0.007 4.007 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.249 0.751 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.157 0.843 48 H 0.248 0.752 49 H 0.097 0.903 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 19.213 -10.762 -16.519 27.528 hybrid contribution -0.977 0.994 0.842 1.628 sum 18.236 -9.768 -15.677 25.957 Atomic orbital electron populations 1.69929 1.07069 1.27303 1.54768 1.25809 0.95617 1.00203 0.99728 0.86226 0.78458 0.81552 0.78082 1.20066 1.23228 1.19925 1.18847 0.86529 0.93770 1.38944 0.91789 1.44395 1.07792 1.39635 1.41940 1.21320 0.96834 0.92466 0.89318 1.22180 0.97510 0.98748 0.97961 1.20597 0.93604 0.92432 0.86862 0.92347 1.45760 1.35252 1.19526 1.34359 1.20111 0.79145 0.86326 0.80833 1.90679 1.67840 1.19540 1.68482 1.21333 0.92125 1.05498 0.97422 1.20152 1.00226 0.94154 0.92348 1.20007 0.93947 0.97908 0.96995 1.21192 0.97262 0.96892 0.99554 1.21346 1.00416 0.96807 0.97076 1.21401 0.94977 1.00548 0.98479 1.21468 0.96610 0.96229 1.00237 1.21317 0.99766 0.96667 0.95704 1.23049 0.92929 0.99200 1.03364 1.23242 0.97330 0.95109 1.01304 1.22244 0.89122 0.90858 0.93645 0.90919 1.86451 1.35478 1.46275 1.69202 1.21752 0.92030 0.92202 0.94756 0.92738 0.92407 0.96243 0.91991 0.90780 0.75131 0.89521 0.86660 0.87080 0.86302 0.84878 0.83914 0.83705 0.85468 0.90552 0.89239 0.84322 0.75244 0.90313 0.95345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.21 13.97 21.65 0.30 -57.91 16 2 C -0.02 -0.99 5.18 84.86 0.44 -0.55 16 3 Si 0.93 47.20 24.54 68.60 1.68 48.88 16 4 H -0.27 -13.39 6.40 99.48 0.64 -12.75 16 5 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 6 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 9 N -0.61 -28.27 2.71 -699.14 -1.89 -30.17 16 10 C 0.13 5.62 4.23 86.36 0.37 5.99 16 11 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 12 C 0.17 5.57 2.08 45.02 0.09 5.67 16 13 H 0.06 2.27 7.66 -2.39 -0.02 2.25 16 14 N -0.70 -18.31 4.92 -442.40 -2.18 -20.49 16 15 C 0.55 15.61 6.56 87.66 0.58 16.19 16 16 O -0.59 -22.66 16.35 -3.04 -0.05 -22.71 16 17 C -0.16 -3.02 1.89 -52.93 -0.10 -3.12 16 18 C -0.03 -0.47 5.22 29.85 0.16 -0.31 16 19 C -0.09 -1.81 4.86 -19.86 -0.10 -1.91 16 20 C -0.13 -3.24 9.51 22.27 0.21 -3.03 16 21 C -0.14 -3.43 10.05 22.27 0.22 -3.21 16 22 C -0.14 -2.92 10.05 22.27 0.22 -2.69 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 24 C -0.12 -2.11 9.72 22.27 0.22 -1.90 16 25 C -0.15 -2.50 9.78 30.62 0.30 -2.20 16 26 C -0.13 -1.79 9.93 30.62 0.30 -1.48 16 27 C 0.10 3.02 3.14 30.67 0.10 3.11 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 O -0.57 -13.68 13.14 -148.98 -1.96 -15.63 16 30 C 0.12 4.37 6.17 86.36 0.53 4.91 16 31 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.06 2.81 4.84 -2.39 -0.01 2.80 16 33 H 0.02 0.90 7.33 -2.39 -0.02 0.88 16 34 H 0.06 2.36 8.07 -2.38 -0.02 2.34 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.41 8.35 8.60 -92.71 -0.80 7.55 16 37 H 0.09 1.16 8.06 -2.39 -0.02 1.14 16 38 H 0.12 0.99 8.06 -2.39 -0.02 0.97 16 39 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 42 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.15 1.74 7.94 -2.91 -0.02 1.72 16 44 H 0.13 1.43 8.02 -2.39 -0.02 1.41 16 45 H 0.08 1.72 8.00 -2.39 -0.02 1.70 16 46 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.40 6.02 9.12 -74.06 -0.68 5.35 16 49 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16 50 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -75.92 403.20 0.09 -75.83 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.59 Total: 26.26 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.78 Total: -4.06 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.77 Total: -108.56 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -2.01 Total: -38.34 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 1.68 Total: 48.88 kcal Total: -75.92 0.09 -75.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099882391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.357 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds