Wall clock time and date at job start Wed Apr 1 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99531 * 2 1 4 4 H 1.48509 * 109.46736 * 272.89386 * 3 2 1 5 5 H 1.48494 * 109.47297 * 32.89778 * 3 2 1 6 6 H 1.48503 * 109.46938 * 152.90033 * 3 2 1 7 7 C 1.38809 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00194 * 339.36732 * 7 2 1 9 9 N 1.36935 * 120.00216 * 159.36275 * 7 2 1 10 10 C 1.46928 * 120.62678 * 332.60875 * 9 7 2 11 11 C 1.53198 * 108.77251 * 233.63093 * 10 9 7 12 12 C 1.53043 * 109.31118 * 305.35979 * 11 10 9 13 13 H 1.09003 * 109.44997 * 301.35753 * 12 11 10 14 14 N 1.46499 * 109.46088 * 181.38565 * 12 11 10 15 15 C 1.34774 * 119.99552 * 84.93494 * 14 12 11 16 16 O 1.21280 * 120.00484 * 0.02562 * 15 14 12 17 17 C 1.50709 * 119.99723 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.46847 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46914 * 179.97438 * 18 17 15 20 20 C 1.32563 * 119.99745 * 124.99966 * 19 18 17 21 21 C 1.47814 * 120.00005 * 180.02562 * 20 19 18 22 22 C 1.39536 * 120.13930 * 359.73182 * 21 20 19 23 23 C 1.37978 * 119.85287 * 179.76508 * 22 21 20 24 24 C 1.38347 * 120.13860 * 0.48454 * 23 22 21 25 25 C 1.38339 * 120.28968 * 359.77012 * 24 23 22 26 26 C 1.37978 * 120.14187 * 359.97438 * 25 24 23 27 27 C 1.53044 * 109.53460 * 61.36767 * 12 11 10 28 28 H 1.08997 * 109.49827 * 178.68296 * 27 12 11 29 29 O 1.42903 * 109.49562 * 58.58373 * 27 12 11 30 30 C 1.46923 * 120.63607 * 152.62919 * 9 7 2 31 31 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58933 * 353.41385 * 10 9 7 33 33 H 1.08996 * 109.59153 * 113.69819 * 10 9 7 34 34 H 1.09003 * 109.49644 * 185.41647 * 11 10 9 35 35 H 1.08990 * 109.50081 * 65.31411 * 11 10 9 36 36 H 0.97000 * 119.99975 * 264.94028 * 14 12 11 37 37 H 1.08995 * 109.46798 * 59.99854 * 17 15 14 38 38 H 1.08998 * 109.46805 * 300.00259 * 17 15 14 39 39 H 1.08994 * 109.47817 * 300.00370 * 18 17 15 40 40 H 1.09004 * 109.47200 * 60.00299 * 18 17 15 41 41 H 1.07994 * 120.00265 * 305.00763 * 19 18 17 42 42 H 1.08004 * 119.99994 * 0.02562 * 20 19 18 43 43 H 1.08002 * 120.07257 * 359.97069 * 22 21 20 44 44 H 1.07997 * 119.92878 * 180.22838 * 23 22 21 45 45 H 1.07998 * 119.85220 * 179.74334 * 24 23 22 46 46 H 1.08001 * 119.92886 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.06752 * 179.97438 * 26 25 24 48 48 H 0.96700 * 113.99718 * 179.97438 * 29 27 12 49 49 H 1.09004 * 109.58411 * 6.58088 * 30 9 7 50 50 H 1.09001 * 109.58532 * 246.15908 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4363 2.0818 -1.3984 5 1 1.4795 2.6342 0.7604 6 1 3.5770 1.4234 0.6378 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3305 9 7 3.3138 -1.2403 -0.4174 10 6 3.8176 -0.2595 -1.3885 11 6 4.4619 -1.0101 -2.5583 12 6 5.5285 -1.9665 -2.0200 13 1 6.2778 -1.4002 -1.4668 14 7 6.1698 -2.6619 -3.1386 15 6 7.1988 -2.0846 -3.7900 16 8 7.5942 -0.9897 -3.4499 17 6 7.8582 -2.7998 -4.9411 18 6 8.9883 -1.9329 -5.5000 19 6 9.6480 -2.6482 -6.6507 20 6 9.7476 -2.0536 -7.8312 21 6 10.3943 -2.7554 -8.9600 22 6 10.9058 -4.0418 -8.7847 23 6 11.5039 -4.6933 -9.8437 24 6 11.6058 -4.0700 -11.0746 25 6 11.1054 -2.7928 -11.2536 26 6 10.5004 -2.1324 -10.2040 27 6 4.8747 -2.9911 -1.0900 28 1 5.6310 -3.6862 -0.7254 29 8 3.8693 -3.7116 -1.8058 30 6 4.2351 -2.2631 0.0963 31 1 -0.4850 0.8400 -0.0004 32 1 2.9911 0.3489 -1.7556 33 1 4.5584 0.3811 -0.9102 34 1 4.9245 -0.2951 -3.2387 35 1 3.6990 -1.5783 -3.0904 36 1 5.8538 -3.5378 -3.4104 37 1 7.1221 -2.9851 -5.7232 38 1 8.2658 -3.7490 -4.5935 39 1 8.5803 -0.9838 -5.8476 40 1 9.7245 -1.7472 -4.7179 41 1 10.0396 -3.6453 -6.5135 42 1 9.3563 -1.0563 -7.9683 43 1 10.8308 -4.5276 -7.8230 44 1 11.8969 -5.6904 -9.7104 45 1 12.0785 -4.5827 -11.8993 46 1 11.1885 -2.3116 -12.2169 47 1 10.1105 -1.1351 -10.3449 48 1 3.4126 -4.3799 -1.2768 49 1 3.6840 -2.9766 0.7089 50 1 5.0118 -1.7875 0.6951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100003392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:38 Heat of formation + Delta-G solvation = -27.857053 kcal Electronic energy + Delta-G solvation = -28877.524105 eV Core-core repulsion = 24870.206742 eV Total energy + Delta-G solvation = -4007.317363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -39.98265 -39.52649 -38.28133 -35.85751 -35.16052 -34.37699 -32.69486 -31.92933 -31.32492 -30.35365 -29.54192 -28.86778 -25.60485 -24.34731 -23.17714 -22.79495 -22.24503 -21.64548 -20.17644 -19.69715 -19.61064 -17.47740 -17.26619 -16.83785 -16.40079 -15.96347 -15.89983 -15.53956 -15.13360 -14.88776 -14.45478 -14.33761 -14.15588 -13.91776 -13.83863 -13.64739 -13.38677 -13.18709 -12.98936 -12.71368 -12.49282 -12.33892 -12.03231 -11.96283 -11.84916 -11.52130 -11.45593 -11.23272 -11.13958 -11.09274 -10.84953 -10.45140 -10.25526 -10.15388 -10.05125 -9.71396 -9.58335 -9.48237 -9.32449 -8.78694 -8.57219 -8.41799 -6.97475 -5.94850 -3.30525 0.57336 1.03827 2.17325 2.72372 3.28737 3.35365 3.50416 3.53405 3.57643 4.31155 4.42112 4.53371 4.55313 4.59245 4.66008 4.74459 4.78900 4.91465 4.95317 5.02182 5.07795 5.09411 5.14712 5.25321 5.32111 5.39633 5.41055 5.57059 5.58797 5.64862 5.69278 5.74239 5.87235 5.96544 6.00484 6.08999 6.12319 6.14235 6.25292 6.28232 6.34852 6.40009 6.48066 6.50160 6.62728 6.66165 6.74610 6.97596 7.65752 7.90640 8.03851 8.31090 8.34333 8.91529 9.71216 10.07584 11.20879 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.001702 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.746693 B =16448.920977 C =16961.002641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.084 0.916 9 N -0.596 5.596 10 C 0.128 3.872 11 C -0.137 4.137 12 C 0.161 3.839 13 H 0.091 0.909 14 N -0.720 5.720 15 C 0.508 3.492 16 O -0.545 6.545 17 C -0.136 4.136 18 C -0.077 4.077 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.050 4.050 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.112 4.112 27 C 0.082 3.918 28 H 0.050 0.950 29 O -0.554 6.554 30 C 0.121 3.879 31 H 0.262 0.738 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.376 0.624 49 H 0.071 0.929 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.697 -11.243 -17.382 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.319 5.319 10 C 0.002 3.998 11 C -0.177 4.177 12 C 0.056 3.944 13 H 0.109 0.891 14 N -0.370 5.370 15 C 0.294 3.706 16 O -0.423 6.423 17 C -0.176 4.176 18 C -0.114 4.114 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.050 4.050 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.130 4.130 27 C 0.020 3.980 28 H 0.067 0.933 29 O -0.359 6.359 30 C -0.006 4.006 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.222 0.778 49 H 0.089 0.911 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.997 -9.966 -17.580 30.614 hybrid contribution 0.039 0.170 0.264 0.316 sum 23.036 -9.796 -17.317 30.438 Atomic orbital electron populations 1.69837 1.05702 1.26547 1.52950 1.25248 0.95209 0.97576 0.99459 0.86976 0.80003 0.84714 0.77106 1.21592 1.23133 1.19568 1.18849 0.84879 0.94649 1.40154 0.89809 1.44187 1.08473 1.32934 1.46305 1.21338 0.97289 0.91947 0.89183 1.22304 0.97806 0.98174 0.99434 1.20963 0.94032 0.92753 0.86606 0.89125 1.46179 1.33873 1.22444 1.34534 1.20678 0.79917 0.86293 0.83724 1.90706 1.64087 1.20596 1.66884 1.21616 0.98930 1.00103 0.96939 1.20443 0.96594 0.98139 0.96261 1.23417 0.97937 0.99692 0.94210 1.21720 1.00862 0.99767 0.92246 1.19126 0.98022 0.94075 0.93802 1.21337 0.98611 0.94503 0.99159 1.21101 0.99452 0.99930 0.93148 1.21213 1.00261 0.95437 0.97455 1.21113 0.98500 0.95185 0.98906 1.21308 0.99357 0.99949 0.92411 1.22575 0.89440 0.92641 0.93320 0.93264 1.86446 1.53877 1.54630 1.40918 1.21576 0.93438 0.92588 0.93043 0.92783 0.90677 0.95612 0.92605 0.90584 0.76310 0.88799 0.88940 0.90445 0.89849 0.86803 0.86195 0.85775 0.86012 0.86175 0.86004 0.85827 0.77751 0.91084 0.95046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.60 16 3 Si 0.88 22.74 24.34 -169.99 -4.14 18.60 16 4 H -0.29 -7.28 6.62 56.52 0.37 -6.91 16 5 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.27 -6.87 6.64 56.52 0.38 -6.49 16 7 C -0.26 -7.08 10.03 -15.06 -0.15 -7.23 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 N -0.60 -13.88 2.71 -172.32 -0.47 -14.35 16 10 C 0.13 2.90 4.21 -3.71 -0.02 2.89 16 11 C -0.14 -2.64 5.51 -26.61 -0.15 -2.79 16 12 C 0.16 2.62 2.20 -67.89 -0.15 2.47 16 13 H 0.09 1.59 7.58 -51.93 -0.39 1.19 16 14 N -0.72 -9.51 5.05 -53.76 -0.27 -9.78 16 15 C 0.51 6.77 7.79 -10.98 -0.09 6.69 16 16 O -0.55 -9.46 15.64 5.56 0.09 -9.38 16 17 C -0.14 -1.21 5.68 -27.88 -0.16 -1.37 16 18 C -0.08 -0.71 4.95 -27.88 -0.14 -0.85 16 19 C -0.13 -1.05 8.94 -36.21 -0.32 -1.37 16 20 C -0.13 -1.06 9.52 -37.57 -0.36 -1.42 16 21 C -0.05 -0.43 5.87 -105.01 -0.62 -1.04 16 22 C -0.12 -0.92 9.40 -39.19 -0.37 -1.28 16 23 C -0.12 -0.83 10.03 -39.64 -0.40 -1.22 16 24 C -0.13 -0.85 10.04 -39.50 -0.40 -1.25 16 25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 26 C -0.11 -0.88 9.79 -39.19 -0.38 -1.27 16 27 C 0.08 1.24 3.38 -26.61 -0.09 1.15 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 O -0.55 -8.49 12.09 -35.23 -0.43 -8.91 16 30 C 0.12 2.22 6.16 -3.72 -0.02 2.20 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.08 1.87 4.50 -51.93 -0.23 1.64 16 33 H 0.03 0.59 7.07 -51.93 -0.37 0.22 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.56 7.61 -51.93 -0.40 1.17 16 36 H 0.40 4.47 8.26 -40.82 -0.34 4.14 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 40 H 0.08 0.83 8.10 -51.93 -0.42 0.40 16 41 H 0.11 0.73 6.04 -52.49 -0.32 0.42 16 42 H 0.12 0.94 7.87 -52.48 -0.41 0.53 16 43 H 0.12 0.77 6.17 -52.49 -0.32 0.45 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.38 4.59 9.08 45.56 0.41 5.00 16 49 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 50 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 400.20 15.07 6.03 6.03 Total: -1.00 -34.25 400.20 -9.72 -43.97 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.02 Total: 7.20 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.29 Total: -6.34 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.04 Total: -51.18 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.34 Total: -18.29 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.25 -9.72 -43.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.116 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds