Wall clock time and date at job start Wed Apr 1 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99531 * 2 1 4 4 H 1.48509 * 109.46736 * 272.89386 * 3 2 1 5 5 H 1.48494 * 109.47297 * 32.89778 * 3 2 1 6 6 H 1.48503 * 109.46938 * 152.90033 * 3 2 1 7 7 C 1.38809 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00194 * 339.36732 * 7 2 1 9 9 N 1.36935 * 120.00216 * 159.36275 * 7 2 1 10 10 C 1.46928 * 120.62678 * 332.60875 * 9 7 2 11 11 C 1.53198 * 108.77251 * 233.63093 * 10 9 7 12 12 C 1.53043 * 109.31118 * 305.35979 * 11 10 9 13 13 H 1.09003 * 109.44997 * 301.35753 * 12 11 10 14 14 N 1.46499 * 109.46088 * 181.38565 * 12 11 10 15 15 C 1.34774 * 119.99552 * 84.93494 * 14 12 11 16 16 O 1.21280 * 120.00484 * 0.02562 * 15 14 12 17 17 C 1.50709 * 119.99723 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.46847 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46914 * 179.97438 * 18 17 15 20 20 C 1.32563 * 119.99745 * 124.99966 * 19 18 17 21 21 C 1.47814 * 120.00005 * 180.02562 * 20 19 18 22 22 C 1.39536 * 120.13930 * 359.73182 * 21 20 19 23 23 C 1.37978 * 119.85287 * 179.76508 * 22 21 20 24 24 C 1.38347 * 120.13860 * 0.48454 * 23 22 21 25 25 C 1.38339 * 120.28968 * 359.77012 * 24 23 22 26 26 C 1.37978 * 120.14187 * 359.97438 * 25 24 23 27 27 C 1.53044 * 109.53460 * 61.36767 * 12 11 10 28 28 H 1.08997 * 109.49827 * 178.68296 * 27 12 11 29 29 O 1.42903 * 109.49562 * 58.58373 * 27 12 11 30 30 C 1.46923 * 120.63607 * 152.62919 * 9 7 2 31 31 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58933 * 353.41385 * 10 9 7 33 33 H 1.08996 * 109.59153 * 113.69819 * 10 9 7 34 34 H 1.09003 * 109.49644 * 185.41647 * 11 10 9 35 35 H 1.08990 * 109.50081 * 65.31411 * 11 10 9 36 36 H 0.97000 * 119.99975 * 264.94028 * 14 12 11 37 37 H 1.08995 * 109.46798 * 59.99854 * 17 15 14 38 38 H 1.08998 * 109.46805 * 300.00259 * 17 15 14 39 39 H 1.08994 * 109.47817 * 300.00370 * 18 17 15 40 40 H 1.09004 * 109.47200 * 60.00299 * 18 17 15 41 41 H 1.07994 * 120.00265 * 305.00763 * 19 18 17 42 42 H 1.08004 * 119.99994 * 0.02562 * 20 19 18 43 43 H 1.08002 * 120.07257 * 359.97069 * 22 21 20 44 44 H 1.07997 * 119.92878 * 180.22838 * 23 22 21 45 45 H 1.07998 * 119.85220 * 179.74334 * 24 23 22 46 46 H 1.08001 * 119.92886 * 179.97438 * 25 24 23 47 47 H 1.08002 * 120.06752 * 179.97438 * 26 25 24 48 48 H 0.96700 * 113.99718 * 179.97438 * 29 27 12 49 49 H 1.09004 * 109.58411 * 6.58088 * 30 9 7 50 50 H 1.09001 * 109.58532 * 246.15908 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4363 2.0818 -1.3984 5 1 1.4795 2.6342 0.7604 6 1 3.5770 1.4234 0.6378 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1073 0.3305 9 7 3.3138 -1.2403 -0.4174 10 6 3.8176 -0.2595 -1.3885 11 6 4.4619 -1.0101 -2.5583 12 6 5.5285 -1.9665 -2.0200 13 1 6.2778 -1.4002 -1.4668 14 7 6.1698 -2.6619 -3.1386 15 6 7.1988 -2.0846 -3.7900 16 8 7.5942 -0.9897 -3.4499 17 6 7.8582 -2.7998 -4.9411 18 6 8.9883 -1.9329 -5.5000 19 6 9.6480 -2.6482 -6.6507 20 6 9.7476 -2.0536 -7.8312 21 6 10.3943 -2.7554 -8.9600 22 6 10.9058 -4.0418 -8.7847 23 6 11.5039 -4.6933 -9.8437 24 6 11.6058 -4.0700 -11.0746 25 6 11.1054 -2.7928 -11.2536 26 6 10.5004 -2.1324 -10.2040 27 6 4.8747 -2.9911 -1.0900 28 1 5.6310 -3.6862 -0.7254 29 8 3.8693 -3.7116 -1.8058 30 6 4.2351 -2.2631 0.0963 31 1 -0.4850 0.8400 -0.0004 32 1 2.9911 0.3489 -1.7556 33 1 4.5584 0.3811 -0.9102 34 1 4.9245 -0.2951 -3.2387 35 1 3.6990 -1.5783 -3.0904 36 1 5.8538 -3.5378 -3.4104 37 1 7.1221 -2.9851 -5.7232 38 1 8.2658 -3.7490 -4.5935 39 1 8.5803 -0.9838 -5.8476 40 1 9.7245 -1.7472 -4.7179 41 1 10.0396 -3.6453 -6.5135 42 1 9.3563 -1.0563 -7.9683 43 1 10.8308 -4.5276 -7.8230 44 1 11.8969 -5.6904 -9.7104 45 1 12.0785 -4.5827 -11.8993 46 1 11.1885 -2.3116 -12.2169 47 1 10.1105 -1.1351 -10.3449 48 1 3.4126 -4.3799 -1.2768 49 1 3.6840 -2.9766 0.7089 50 1 5.0118 -1.7875 0.6951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100003392.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:37 Heat of formation + Delta-G solvation = -51.434713 kcal Electronic energy + Delta-G solvation = -28878.546509 eV Core-core repulsion = 24870.206742 eV Total energy + Delta-G solvation = -4008.339767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.15374 -40.06181 -39.61503 -36.74926 -36.52720 -35.63225 -33.96893 -33.30815 -31.90077 -31.80699 -30.91950 -29.70866 -27.06684 -25.42932 -24.36705 -23.83885 -23.49353 -22.53978 -21.36959 -20.93900 -20.25986 -19.04483 -17.99707 -17.93353 -17.70162 -17.55085 -16.64642 -16.63831 -16.20413 -15.90941 -15.76323 -15.69292 -15.37063 -15.06756 -14.86764 -14.62148 -14.40559 -14.17737 -13.96362 -13.88828 -13.79522 -13.56369 -13.48881 -13.15908 -13.10519 -12.74234 -12.49226 -12.45126 -12.16026 -12.10739 -11.89034 -11.84014 -11.73494 -11.69093 -11.42540 -11.09386 -11.05079 -10.83963 -10.57167 -9.99918 -9.84093 -8.98852 -8.91546 -8.17091 -5.47017 0.02390 0.52125 1.28122 1.37934 1.45943 1.59288 1.69202 2.24637 2.40143 3.00833 3.03748 3.28268 3.42901 3.66412 3.77498 3.85817 3.93306 3.95813 4.12234 4.18337 4.19572 4.22419 4.24253 4.29147 4.41966 4.42973 4.52616 4.59896 4.61958 4.66915 4.77428 4.78619 4.82601 4.89021 4.95608 4.97734 5.00630 5.08655 5.17470 5.21031 5.35518 5.42083 5.53214 5.56385 5.63843 5.76285 5.85342 5.92052 6.12275 6.12847 6.64407 6.85671 7.00470 7.32648 7.60752 8.01794 9.02417 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.001702 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.746693 B =16448.920977 C =16961.002641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.033 4.033 3 Si 0.936 3.064 4 H -0.286 1.286 5 H -0.309 1.309 6 H -0.263 1.263 7 C -0.236 4.236 8 H 0.062 0.938 9 N -0.608 5.608 10 C 0.125 3.875 11 C -0.125 4.125 12 C 0.164 3.836 13 H 0.082 0.918 14 N -0.709 5.709 15 C 0.505 3.495 16 O -0.589 6.589 17 C -0.125 4.125 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.136 4.136 21 C -0.069 4.069 22 C -0.129 4.129 23 C -0.126 4.126 24 C -0.133 4.133 25 C -0.128 4.128 26 C -0.129 4.129 27 C 0.097 3.903 28 H 0.092 0.908 29 O -0.566 6.566 30 C 0.111 3.889 31 H 0.260 0.740 32 H 0.047 0.953 33 H 0.027 0.973 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.129 0.871 48 H 0.390 0.610 49 H 0.078 0.922 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.335 -13.514 -18.381 34.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.238 1.238 6 H -0.187 1.187 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.332 5.332 10 C 0.000 4.000 11 C -0.165 4.165 12 C 0.059 3.941 13 H 0.100 0.900 14 N -0.360 5.360 15 C 0.293 3.707 16 O -0.469 6.469 17 C -0.164 4.164 18 C -0.111 4.111 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.069 4.069 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.147 4.147 27 C 0.036 3.964 28 H 0.110 0.890 29 O -0.373 6.373 30 C -0.015 4.015 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.253 0.747 37 H 0.128 0.872 38 H 0.144 0.856 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.156 0.844 47 H 0.147 0.853 48 H 0.240 0.760 49 H 0.097 0.903 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.681 -12.293 -18.594 34.005 hybrid contribution -0.732 0.789 0.529 1.199 sum 24.948 -11.504 -18.065 32.880 Atomic orbital electron populations 1.69948 1.07118 1.26933 1.56070 1.25798 0.95733 1.00452 1.00824 0.86077 0.78919 0.81367 0.77026 1.21301 1.23835 1.18747 1.18869 0.86556 0.93526 1.37614 0.91999 1.44284 1.07893 1.34151 1.46861 1.21280 0.96404 0.92117 0.90235 1.22100 0.98197 0.98369 0.97833 1.20719 0.93029 0.92766 0.87616 0.89990 1.46003 1.33584 1.22744 1.33706 1.21456 0.79369 0.85786 0.84072 1.90696 1.65311 1.22704 1.68224 1.21629 0.98794 1.00626 0.95378 1.20363 0.96594 0.97673 0.96498 1.23382 0.97707 1.00263 0.93244 1.21786 1.01104 0.99803 0.92702 1.19280 0.98846 0.94765 0.94023 1.21579 0.98612 0.94334 1.00131 1.21421 0.99120 1.00844 0.93026 1.21551 0.99896 0.95429 0.98170 1.21395 0.98217 0.95557 0.99458 1.21530 0.99898 1.00525 0.92759 1.22399 0.89948 0.92669 0.91402 0.89005 1.86415 1.54248 1.55108 1.41560 1.21904 0.93012 0.91742 0.94820 0.93117 0.93516 0.95494 0.92906 0.91943 0.74667 0.87219 0.85631 0.92388 0.90697 0.84923 0.86634 0.84414 0.84036 0.84191 0.84366 0.85297 0.76033 0.90334 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.97 21.65 0.30 -59.87 16 2 C -0.03 -1.96 5.23 84.86 0.44 -1.52 16 3 Si 0.94 47.98 24.34 68.60 1.67 49.65 16 4 H -0.29 -14.32 6.62 99.48 0.66 -13.67 16 5 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 6 H -0.26 -12.95 6.64 99.48 0.66 -12.29 16 7 C -0.24 -13.09 10.03 84.03 0.84 -12.24 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 9 N -0.61 -27.86 2.71 -699.11 -1.89 -29.75 16 10 C 0.13 5.62 4.21 86.36 0.36 5.98 16 11 C -0.12 -4.70 5.51 30.67 0.17 -4.53 16 12 C 0.16 4.97 2.20 45.02 0.10 5.07 16 13 H 0.08 2.69 7.58 -2.39 -0.02 2.68 16 14 N -0.71 -16.68 5.05 -442.39 -2.23 -18.91 16 15 C 0.50 12.33 7.79 87.66 0.68 13.02 16 16 O -0.59 -19.87 15.64 -3.03 -0.05 -19.92 16 17 C -0.12 -1.85 5.68 29.85 0.17 -1.68 16 18 C -0.07 -1.24 4.95 29.85 0.15 -1.09 16 19 C -0.13 -1.75 8.94 24.54 0.22 -1.53 16 20 C -0.14 -2.13 9.52 23.65 0.23 -1.91 16 21 C -0.07 -1.11 5.87 -20.12 -0.12 -1.23 16 22 C -0.13 -1.76 9.40 22.52 0.21 -1.55 16 23 C -0.13 -1.50 10.03 22.23 0.22 -1.28 16 24 C -0.13 -1.55 10.04 22.32 0.22 -1.33 16 25 C -0.13 -1.65 10.03 22.23 0.22 -1.43 16 26 C -0.13 -1.96 9.79 22.52 0.22 -1.73 16 27 C 0.10 2.61 3.38 30.67 0.10 2.72 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 O -0.57 -15.68 12.09 -148.98 -1.80 -17.48 16 30 C 0.11 3.82 6.16 86.36 0.53 4.35 16 31 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 32 H 0.05 2.35 4.50 -2.39 -0.01 2.34 16 33 H 0.03 1.21 7.07 -2.39 -0.02 1.19 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.52 7.61 -2.39 -0.02 2.50 16 36 H 0.42 7.66 8.26 -92.71 -0.77 6.89 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.19 7.77 -2.39 -0.02 1.18 16 40 H 0.07 1.39 8.10 -2.38 -0.02 1.38 16 41 H 0.13 1.30 6.04 -2.91 -0.02 1.28 16 42 H 0.12 1.82 7.87 -2.91 -0.02 1.80 16 43 H 0.14 1.36 6.17 -2.91 -0.02 1.34 16 44 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 48 H 0.39 8.36 9.08 -74.06 -0.67 7.69 16 49 H 0.08 2.57 7.93 -2.38 -0.02 2.56 16 50 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -76.11 400.20 0.40 -75.71 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.58 Total: 22.48 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.98 Total: -1.91 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.83 Total: -108.53 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.85 Total: -37.39 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.65 kcal Total: -76.11 0.40 -75.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003392.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.274 kcal (2) G-P(sol) polarization free energy of solvation -76.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds