Wall clock time and date at job start Wed Apr 1 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48505 * 109.47520 * 274.89829 * 3 2 1 5 5 H 1.48504 * 109.46789 * 34.89919 * 3 2 1 6 6 H 1.48497 * 109.47470 * 154.89338 * 3 2 1 7 7 C 1.38820 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99195 * 339.75004 * 7 2 1 9 9 N 1.36937 * 120.00215 * 159.74937 * 7 2 1 10 10 C 1.46923 * 120.63118 * 332.80394 * 9 7 2 11 11 C 1.53194 * 108.77095 * 233.58630 * 10 9 7 12 12 C 1.53043 * 109.31087 * 305.36055 * 11 10 9 13 13 H 1.08999 * 109.45759 * 301.35815 * 12 11 10 14 14 N 1.46499 * 109.45629 * 181.38621 * 12 11 10 15 15 C 1.34782 * 120.00084 * 85.00319 * 14 12 11 16 16 O 1.21277 * 119.99587 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00301 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47110 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47164 * 180.02562 * 18 17 15 20 20 C 1.32563 * 120.00089 * 125.27375 * 19 18 17 21 21 C 1.47814 * 120.00213 * 179.72476 * 20 19 18 22 22 C 1.39539 * 120.13656 * 359.73313 * 21 20 19 23 23 C 1.37975 * 119.84894 * 179.72314 * 22 21 20 24 24 C 1.38342 * 120.14566 * 0.56565 * 23 22 21 25 25 C 1.38347 * 120.28357 * 359.68501 * 24 23 22 26 26 C 1.37971 * 120.14335 * 0.04014 * 25 24 23 27 27 C 1.53031 * 109.53592 * 61.36943 * 12 11 10 28 28 H 1.09004 * 109.50548 * 58.58575 * 27 12 11 29 29 O 1.42903 * 109.49957 * 178.68166 * 27 12 11 30 30 C 1.46927 * 120.62979 * 152.77587 * 9 7 2 31 31 H 0.96991 * 120.00214 * 359.97438 * 1 2 3 32 32 H 1.08989 * 109.59191 * 113.79796 * 10 9 7 33 33 H 1.09007 * 109.58727 * 353.36448 * 10 9 7 34 34 H 1.09005 * 109.49806 * 185.41270 * 11 10 9 35 35 H 1.08998 * 109.50163 * 65.31466 * 11 10 9 36 36 H 0.96996 * 120.00385 * 264.99808 * 14 12 11 37 37 H 1.09005 * 109.47037 * 60.00100 * 17 15 14 38 38 H 1.09003 * 109.47434 * 300.00441 * 17 15 14 39 39 H 1.08999 * 109.47347 * 60.00465 * 18 17 15 40 40 H 1.08994 * 109.47680 * 300.00018 * 18 17 15 41 41 H 1.08000 * 120.00062 * 305.00453 * 19 18 17 42 42 H 1.08000 * 119.99794 * 359.73079 * 20 19 18 43 43 H 1.07991 * 120.07526 * 359.96882 * 22 21 20 44 44 H 1.08007 * 119.92787 * 180.27150 * 23 22 21 45 45 H 1.08001 * 119.85891 * 179.70151 * 24 23 22 46 46 H 1.07998 * 119.92583 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.06854 * 179.97438 * 26 25 24 48 48 H 0.96695 * 114.00482 * 179.97438 * 29 27 12 49 49 H 1.08998 * 109.58415 * 246.20575 * 30 9 7 50 50 H 1.09003 * 109.58690 * 6.47993 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1063 -1.3950 5 1 1.5032 2.6205 0.8011 6 1 3.5956 1.4126 0.5940 7 6 2.0104 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3228 9 7 3.3162 -1.2386 -0.4110 10 6 3.8268 -0.2511 -1.3717 11 6 4.4783 -0.9936 -2.5426 12 6 5.5409 -1.9545 -2.0042 13 1 6.2869 -1.3928 -1.4421 14 7 6.1890 -2.6422 -3.1237 15 6 7.2235 -2.0615 -3.7635 16 8 7.6174 -0.9695 -3.4126 17 6 7.8906 -2.7691 -4.9146 18 6 9.0256 -1.8995 -5.4590 19 6 9.6924 -2.6069 -6.6106 20 6 9.8059 -2.0012 -7.7843 21 6 10.4652 -2.6927 -8.9122 22 6 10.9742 -3.9808 -8.7430 23 6 11.5835 -4.6230 -9.8014 24 6 11.7007 -3.9880 -11.0249 25 6 11.2027 -2.7088 -11.1976 26 6 10.5863 -2.0579 -10.1488 27 6 4.8805 -2.9854 -1.0861 28 1 4.1169 -3.5307 -1.6409 29 8 5.8685 -3.9007 -0.6082 30 6 4.2336 -2.2656 0.1013 31 1 -0.4850 0.8399 0.0004 32 1 4.5667 0.3838 -0.8846 33 1 3.0030 0.3604 -1.7398 34 1 4.9457 -0.2740 -3.2149 35 1 3.7185 -1.5575 -3.0838 36 1 5.8738 -3.5155 -3.4045 37 1 7.1600 -2.9480 -5.7036 38 1 8.2946 -3.7213 -4.5709 39 1 9.7563 -1.7202 -4.6703 40 1 8.6213 -0.9476 -5.8029 41 1 10.0817 -3.6056 -6.4785 42 1 9.4166 -1.0025 -7.9164 43 1 10.8880 -4.4756 -7.7870 44 1 11.9740 -5.6218 -9.6731 45 1 12.1827 -4.4931 -11.8489 46 1 11.2970 -2.2187 -12.1553 47 1 10.1983 -1.0592 -10.2848 48 1 5.5199 -4.5834 -0.0187 49 1 5.0067 -1.7948 0.7086 50 1 3.6786 -2.9818 0.7074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100003393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:42 Heat of formation + Delta-G solvation = -30.380048 kcal Electronic energy + Delta-G solvation = -28766.713713 eV Core-core repulsion = 24759.286945 eV Total energy + Delta-G solvation = -4007.426768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.96667 -39.52145 -38.24941 -35.84679 -35.66745 -34.40805 -32.68997 -32.02763 -31.32090 -30.41223 -29.41164 -28.84006 -25.62911 -24.37280 -23.17419 -22.78138 -22.25414 -21.66263 -20.25764 -19.72735 -19.63011 -17.47310 -17.34077 -16.87357 -16.63959 -16.16755 -15.89678 -15.53260 -15.13290 -14.95276 -14.54070 -14.41889 -14.06550 -13.87589 -13.74842 -13.64084 -13.31934 -13.15603 -12.97464 -12.70087 -12.53061 -12.44962 -12.22129 -12.04444 -11.86799 -11.57649 -11.49375 -11.23253 -11.19813 -11.12479 -11.02451 -10.44324 -10.21088 -10.17615 -10.00980 -9.89468 -9.61732 -9.53916 -9.32043 -8.81019 -8.68815 -8.41091 -7.09372 -6.02030 -3.40203 0.57948 1.04277 2.18078 2.76386 3.28978 3.30361 3.46808 3.49967 3.58102 4.25462 4.33578 4.43008 4.47696 4.59732 4.67293 4.75784 4.79859 4.89174 4.95856 5.02240 5.08602 5.10252 5.15236 5.30216 5.34117 5.38893 5.41739 5.54737 5.59296 5.65590 5.70344 5.73802 5.78890 5.88390 6.00937 6.03609 6.09649 6.14683 6.22320 6.27974 6.35725 6.37781 6.49882 6.50913 6.55291 6.63231 6.70428 6.78469 7.64676 7.74886 7.89183 8.23854 8.36529 8.83330 9.63024 9.98226 11.13291 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.001714 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.110244 B =16329.511954 C =17060.183019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.126 3.874 11 C -0.140 4.140 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.717 5.717 15 C 0.510 3.490 16 O -0.545 6.545 17 C -0.135 4.135 18 C -0.077 4.077 19 C -0.134 4.134 20 C -0.129 4.129 21 C -0.050 4.050 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.112 4.112 27 C 0.080 3.920 28 H 0.061 0.939 29 O -0.570 6.570 30 C 0.124 3.876 31 H 0.264 0.736 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.376 0.624 49 H 0.033 0.967 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.312 -10.679 -18.219 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.173 4.173 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.104 0.896 9 N -0.327 5.327 10 C 0.000 4.000 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.106 0.894 14 N -0.367 5.367 15 C 0.297 3.703 16 O -0.422 6.422 17 C -0.176 4.176 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.050 4.050 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.130 4.130 27 C 0.019 3.981 28 H 0.079 0.921 29 O -0.374 6.374 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.232 0.768 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.223 0.777 49 H 0.051 0.949 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.814 -9.428 -18.295 29.990 hybrid contribution -0.216 0.157 0.153 0.308 sum 21.598 -9.271 -18.141 29.691 Atomic orbital electron populations 1.69818 1.05723 1.26721 1.52521 1.25258 0.95231 0.97654 0.99118 0.86979 0.80212 0.84536 0.77146 1.21501 1.22971 1.19314 1.18891 0.84457 0.94868 1.41243 0.89551 1.44311 1.08376 1.32509 1.47470 1.21381 0.97354 0.92039 0.89203 1.22424 0.97391 0.98557 0.99701 1.20924 0.94761 0.92643 0.85936 0.89383 1.46068 1.33909 1.22325 1.34363 1.20622 0.79808 0.86174 0.83736 1.90703 1.64066 1.20872 1.66582 1.21611 0.98812 1.00244 0.96890 1.20444 0.96561 0.98145 0.96300 1.23427 0.97843 0.99694 0.94205 1.21714 1.00860 0.99777 0.92325 1.19128 0.97971 0.94056 0.93844 1.21339 0.98582 0.94545 0.99152 1.21101 0.99392 0.99933 0.93193 1.21214 1.00283 0.95374 0.97513 1.21112 0.98485 0.95226 0.98888 1.21303 0.99340 0.99932 0.92471 1.22724 0.89266 0.90029 0.96103 0.92116 1.86472 1.37653 1.44701 1.68607 1.21550 0.93139 0.92389 0.93265 0.92633 0.95058 0.90460 0.91489 0.91338 0.76848 0.88890 0.88867 0.89804 0.90467 0.86797 0.86204 0.85762 0.86013 0.86179 0.86014 0.85837 0.77737 0.94867 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.25 13.97 55.49 0.78 -26.47 16 2 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 3 Si 0.88 22.29 24.34 -169.99 -4.14 18.15 16 4 H -0.29 -7.06 6.70 56.52 0.38 -6.68 16 5 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.27 -6.71 6.45 56.52 0.36 -6.35 16 7 C -0.27 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 9 N -0.60 -13.86 2.77 -172.32 -0.48 -14.34 16 10 C 0.13 2.76 4.19 -3.71 -0.02 2.75 16 11 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 12 C 0.16 2.67 2.12 -67.89 -0.14 2.53 16 13 H 0.09 1.68 7.58 -51.93 -0.39 1.28 16 14 N -0.72 -9.60 4.92 -53.77 -0.26 -9.86 16 15 C 0.51 7.00 7.79 -10.99 -0.09 6.91 16 16 O -0.54 -9.72 15.64 5.56 0.09 -9.63 16 17 C -0.14 -1.24 5.68 -27.89 -0.16 -1.40 16 18 C -0.08 -0.73 4.95 -27.88 -0.14 -0.86 16 19 C -0.13 -1.06 8.94 -36.21 -0.32 -1.39 16 20 C -0.13 -1.07 9.52 -37.57 -0.36 -1.43 16 21 C -0.05 -0.43 5.87 -105.01 -0.62 -1.04 16 22 C -0.12 -0.93 9.40 -39.19 -0.37 -1.29 16 23 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 24 C -0.13 -0.86 10.04 -39.50 -0.40 -1.25 16 25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.24 16 26 C -0.11 -0.89 9.79 -39.20 -0.38 -1.27 16 27 C 0.08 1.25 3.14 -26.62 -0.08 1.16 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -7.72 13.16 -35.23 -0.46 -8.18 16 30 C 0.12 2.32 6.14 -3.71 -0.02 2.30 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.03 0.70 6.98 -51.94 -0.36 0.34 16 33 H 0.08 1.84 4.50 -51.93 -0.23 1.61 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.27 8.60 -40.82 -0.35 3.92 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.08 0.81 7.77 -51.93 -0.40 0.41 16 41 H 0.11 0.76 6.04 -52.49 -0.32 0.44 16 42 H 0.12 0.94 7.87 -52.49 -0.41 0.53 16 43 H 0.12 0.79 6.17 -52.49 -0.32 0.46 16 44 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 45 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.38 3.55 9.08 45.56 0.41 3.96 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -33.79 401.70 -9.77 -43.56 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.06 Total: 6.90 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -4.28 Total: -6.18 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.03 Total: -50.67 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.38 Total: -17.81 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.79 -9.77 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.181 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds