Wall clock time and date at job start Wed Apr 1 2020 03:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48505 * 109.47520 * 274.89829 * 3 2 1 5 5 H 1.48504 * 109.46789 * 34.89919 * 3 2 1 6 6 H 1.48497 * 109.47470 * 154.89338 * 3 2 1 7 7 C 1.38820 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99195 * 339.75004 * 7 2 1 9 9 N 1.36937 * 120.00215 * 159.74937 * 7 2 1 10 10 C 1.46923 * 120.63118 * 332.80394 * 9 7 2 11 11 C 1.53194 * 108.77095 * 233.58630 * 10 9 7 12 12 C 1.53043 * 109.31087 * 305.36055 * 11 10 9 13 13 H 1.08999 * 109.45759 * 301.35815 * 12 11 10 14 14 N 1.46499 * 109.45629 * 181.38621 * 12 11 10 15 15 C 1.34782 * 120.00084 * 85.00319 * 14 12 11 16 16 O 1.21277 * 119.99587 * 359.97438 * 15 14 12 17 17 C 1.50696 * 120.00301 * 179.97438 * 15 14 12 18 18 C 1.52996 * 109.47110 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47164 * 180.02562 * 18 17 15 20 20 C 1.32563 * 120.00089 * 125.27375 * 19 18 17 21 21 C 1.47814 * 120.00213 * 179.72476 * 20 19 18 22 22 C 1.39539 * 120.13656 * 359.73313 * 21 20 19 23 23 C 1.37975 * 119.84894 * 179.72314 * 22 21 20 24 24 C 1.38342 * 120.14566 * 0.56565 * 23 22 21 25 25 C 1.38347 * 120.28357 * 359.68501 * 24 23 22 26 26 C 1.37971 * 120.14335 * 0.04014 * 25 24 23 27 27 C 1.53031 * 109.53592 * 61.36943 * 12 11 10 28 28 H 1.09004 * 109.50548 * 58.58575 * 27 12 11 29 29 O 1.42903 * 109.49957 * 178.68166 * 27 12 11 30 30 C 1.46927 * 120.62979 * 152.77587 * 9 7 2 31 31 H 0.96991 * 120.00214 * 359.97438 * 1 2 3 32 32 H 1.08989 * 109.59191 * 113.79796 * 10 9 7 33 33 H 1.09007 * 109.58727 * 353.36448 * 10 9 7 34 34 H 1.09005 * 109.49806 * 185.41270 * 11 10 9 35 35 H 1.08998 * 109.50163 * 65.31466 * 11 10 9 36 36 H 0.96996 * 120.00385 * 264.99808 * 14 12 11 37 37 H 1.09005 * 109.47037 * 60.00100 * 17 15 14 38 38 H 1.09003 * 109.47434 * 300.00441 * 17 15 14 39 39 H 1.08999 * 109.47347 * 60.00465 * 18 17 15 40 40 H 1.08994 * 109.47680 * 300.00018 * 18 17 15 41 41 H 1.08000 * 120.00062 * 305.00453 * 19 18 17 42 42 H 1.08000 * 119.99794 * 359.73079 * 20 19 18 43 43 H 1.07991 * 120.07526 * 359.96882 * 22 21 20 44 44 H 1.08007 * 119.92787 * 180.27150 * 23 22 21 45 45 H 1.08001 * 119.85891 * 179.70151 * 24 23 22 46 46 H 1.07998 * 119.92583 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.06854 * 179.97438 * 26 25 24 48 48 H 0.96695 * 114.00482 * 179.97438 * 29 27 12 49 49 H 1.08998 * 109.58415 * 246.20575 * 30 9 7 50 50 H 1.09003 * 109.58690 * 6.47993 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1063 -1.3950 5 1 1.5032 2.6205 0.8011 6 1 3.5956 1.4126 0.5940 7 6 2.0104 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3228 9 7 3.3162 -1.2386 -0.4110 10 6 3.8268 -0.2511 -1.3717 11 6 4.4783 -0.9936 -2.5426 12 6 5.5409 -1.9545 -2.0042 13 1 6.2869 -1.3928 -1.4421 14 7 6.1890 -2.6422 -3.1237 15 6 7.2235 -2.0615 -3.7635 16 8 7.6174 -0.9695 -3.4126 17 6 7.8906 -2.7691 -4.9146 18 6 9.0256 -1.8995 -5.4590 19 6 9.6924 -2.6069 -6.6106 20 6 9.8059 -2.0012 -7.7843 21 6 10.4652 -2.6927 -8.9122 22 6 10.9742 -3.9808 -8.7430 23 6 11.5835 -4.6230 -9.8014 24 6 11.7007 -3.9880 -11.0249 25 6 11.2027 -2.7088 -11.1976 26 6 10.5863 -2.0579 -10.1488 27 6 4.8805 -2.9854 -1.0861 28 1 4.1169 -3.5307 -1.6409 29 8 5.8685 -3.9007 -0.6082 30 6 4.2336 -2.2656 0.1013 31 1 -0.4850 0.8399 0.0004 32 1 4.5667 0.3838 -0.8846 33 1 3.0030 0.3604 -1.7398 34 1 4.9457 -0.2740 -3.2149 35 1 3.7185 -1.5575 -3.0838 36 1 5.8738 -3.5155 -3.4045 37 1 7.1600 -2.9480 -5.7036 38 1 8.2946 -3.7213 -4.5709 39 1 9.7563 -1.7202 -4.6703 40 1 8.6213 -0.9476 -5.8029 41 1 10.0817 -3.6056 -6.4785 42 1 9.4166 -1.0025 -7.9164 43 1 10.8880 -4.4756 -7.7870 44 1 11.9740 -5.6218 -9.6731 45 1 12.1827 -4.4931 -11.8489 46 1 11.2970 -2.2187 -12.1553 47 1 10.1983 -1.0592 -10.2848 48 1 5.5199 -4.5834 -0.0187 49 1 5.0067 -1.7948 0.7086 50 1 3.6786 -2.9818 0.7074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100003393.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:41 Heat of formation + Delta-G solvation = -53.526684 kcal Electronic energy + Delta-G solvation = -28767.717426 eV Core-core repulsion = 24759.286945 eV Total energy + Delta-G solvation = -4008.430482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.15832 -40.05999 -39.58875 -37.12568 -36.54541 -35.71994 -34.04543 -33.31517 -31.93761 -31.81071 -30.77448 -29.71305 -27.10582 -25.44567 -24.30391 -23.84522 -23.50630 -22.54804 -21.53280 -21.00287 -20.25948 -19.00334 -18.06591 -17.98343 -17.94671 -17.65137 -16.72879 -16.64147 -16.23454 -16.18052 -15.77783 -15.57122 -15.12707 -15.00250 -14.89363 -14.57031 -14.42062 -14.17646 -14.03694 -13.90957 -13.83101 -13.65560 -13.45195 -13.20653 -13.11296 -12.95694 -12.67212 -12.49193 -12.15876 -12.10493 -11.89735 -11.83817 -11.68942 -11.65027 -11.46152 -11.16847 -11.05544 -10.88755 -10.64917 -10.03871 -9.83946 -9.03203 -8.98270 -8.20591 -5.53886 0.02445 0.52318 1.27075 1.38940 1.46373 1.59505 1.70470 2.22388 2.37164 2.91033 3.03897 3.11109 3.34924 3.64116 3.79303 3.85843 3.95029 3.99666 4.09362 4.12419 4.18668 4.21819 4.23435 4.29188 4.30767 4.42258 4.52435 4.56121 4.60665 4.65657 4.72826 4.77493 4.80639 4.85919 4.89340 4.98021 5.02034 5.08743 5.17612 5.20904 5.24490 5.42046 5.50638 5.56492 5.64021 5.76259 5.80108 5.92162 6.08539 6.13007 6.62246 6.78440 6.91550 7.32901 7.54692 7.94758 8.98382 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.001714 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.110244 B =16329.511954 C =17060.183019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.026 4.026 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.308 1.308 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.613 5.613 10 C 0.122 3.878 11 C -0.128 4.128 12 C 0.167 3.833 13 H 0.063 0.937 14 N -0.706 5.706 15 C 0.506 3.494 16 O -0.591 6.591 17 C -0.124 4.124 18 C -0.074 4.074 19 C -0.129 4.129 20 C -0.134 4.134 21 C -0.069 4.069 22 C -0.129 4.129 23 C -0.127 4.127 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.128 4.128 27 C 0.101 3.899 28 H 0.071 0.929 29 O -0.568 6.568 30 C 0.118 3.882 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.397 0.603 49 H 0.031 0.969 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.391 -12.805 -19.737 33.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.222 4.222 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.237 1.237 6 H -0.191 1.191 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.338 5.338 10 C -0.003 4.003 11 C -0.168 4.168 12 C 0.061 3.939 13 H 0.081 0.919 14 N -0.357 5.357 15 C 0.294 3.706 16 O -0.471 6.471 17 C -0.163 4.163 18 C -0.111 4.111 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.069 4.069 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.146 4.146 27 C 0.040 3.960 28 H 0.089 0.911 29 O -0.375 6.375 30 C -0.008 4.008 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.148 0.852 48 H 0.247 0.753 49 H 0.049 0.951 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.934 -11.616 -19.826 33.179 hybrid contribution -0.784 0.721 0.622 1.234 sum 23.150 -10.894 -19.203 31.990 Atomic orbital electron populations 1.69920 1.07080 1.27192 1.55361 1.25782 0.95724 1.00398 1.00246 0.86105 0.78882 0.81270 0.77337 1.20605 1.23702 1.19058 1.18897 0.86014 0.93846 1.39065 0.91680 1.44391 1.07733 1.33606 1.48119 1.21342 0.96586 0.92140 0.90251 1.22230 0.97781 0.98734 0.98057 1.20600 0.93645 0.92709 0.86940 0.91907 1.45894 1.33653 1.22807 1.33358 1.21447 0.79292 0.85671 0.84166 1.90691 1.65317 1.23094 1.68013 1.21623 0.98758 1.00518 0.95429 1.20358 0.96503 0.97810 0.96457 1.23367 0.97770 1.00248 0.93270 1.21785 1.00933 0.99819 0.92699 1.19279 0.98817 0.94726 0.94094 1.21576 0.98623 0.94419 1.00078 1.21416 0.99085 1.00848 0.93085 1.21552 0.99911 0.95375 0.98191 1.21398 0.98175 0.95588 0.99451 1.21529 0.99818 1.00520 0.92769 1.22267 0.89441 0.89876 0.94437 0.91084 1.86447 1.37002 1.44854 1.69190 1.21761 0.92498 0.91656 0.94842 0.92846 0.95569 0.92578 0.91406 0.90787 0.74857 0.86723 0.86008 0.91053 0.92156 0.85062 0.86498 0.84510 0.84084 0.84188 0.84328 0.85218 0.75284 0.95091 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.44 13.97 21.65 0.30 -58.13 16 2 C -0.03 -1.49 5.24 84.86 0.44 -1.05 16 3 Si 0.93 46.84 24.34 68.60 1.67 48.51 16 4 H -0.28 -13.45 6.70 99.48 0.67 -12.78 16 5 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 6 H -0.27 -13.03 6.45 99.48 0.64 -12.39 16 7 C -0.25 -13.58 10.04 84.04 0.84 -12.74 16 8 H 0.07 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.61 -27.88 2.77 -699.10 -1.94 -29.82 16 10 C 0.12 5.31 4.19 86.36 0.36 5.67 16 11 C -0.13 -4.50 5.65 30.67 0.17 -4.33 16 12 C 0.17 5.23 2.12 45.02 0.10 5.32 16 13 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 14 N -0.71 -17.08 4.92 -442.42 -2.18 -19.25 16 15 C 0.51 12.89 7.79 87.65 0.68 13.57 16 16 O -0.59 -20.76 15.64 -3.02 -0.05 -20.81 16 17 C -0.12 -1.91 5.68 29.85 0.17 -1.74 16 18 C -0.07 -1.29 4.95 29.85 0.15 -1.14 16 19 C -0.13 -1.81 8.94 24.54 0.22 -1.59 16 20 C -0.13 -2.11 9.52 23.65 0.23 -1.89 16 21 C -0.07 -1.11 5.87 -20.12 -0.12 -1.23 16 22 C -0.13 -1.79 9.40 22.52 0.21 -1.58 16 23 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 24 C -0.13 -1.55 10.04 22.32 0.22 -1.33 16 25 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 26 C -0.13 -1.93 9.79 22.52 0.22 -1.71 16 27 C 0.10 2.90 3.14 30.67 0.10 3.00 16 28 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 29 O -0.57 -13.44 13.16 -148.98 -1.96 -15.40 16 30 C 0.12 4.27 6.14 86.36 0.53 4.80 16 31 H 0.26 15.43 8.31 -92.72 -0.77 14.66 16 32 H 0.03 1.16 6.98 -2.39 -0.02 1.15 16 33 H 0.06 2.66 4.50 -2.38 -0.01 2.65 16 34 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.41 7.35 8.60 -92.71 -0.80 6.55 16 37 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 40 H 0.06 1.25 7.77 -2.39 -0.02 1.23 16 41 H 0.13 1.37 6.04 -2.91 -0.02 1.36 16 42 H 0.12 1.82 7.87 -2.91 -0.02 1.79 16 43 H 0.14 1.41 6.17 -2.92 -0.02 1.39 16 44 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 46 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 47 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 48 H 0.40 5.98 9.08 -74.06 -0.67 5.31 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.08 2.66 7.93 -2.39 -0.02 2.64 16 Total: -1.00 -74.44 401.70 0.20 -74.23 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.62 Total: 21.35 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 4.97 Total: -0.67 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.81 Total: -107.21 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -2.01 Total: -36.21 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.67 Total: 48.51 kcal Total: -74.44 0.20 -74.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003393.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.704 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds