Wall clock time and date at job start Wed Apr 1 2020 03:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48492 * 109.47009 * 239.99509 * 3 2 1 5 5 H 1.48501 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46900 * 119.99643 * 3 2 1 7 7 C 1.38808 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00372 * 180.45116 * 7 2 1 9 9 N 1.36941 * 120.00173 * 0.44762 * 7 2 1 10 10 C 1.46927 * 120.63055 * 324.00204 * 9 7 2 11 11 C 1.53201 * 108.77173 * 233.58284 * 10 9 7 12 12 C 1.53034 * 109.31265 * 305.36636 * 11 10 9 13 13 H 1.09002 * 109.45890 * 301.35405 * 12 11 10 14 14 N 1.46500 * 109.46035 * 181.38958 * 12 11 10 15 15 C 1.34775 * 120.00419 * 84.99448 * 14 12 11 16 16 O 1.21277 * 119.99653 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00203 * 179.72784 * 15 14 12 18 18 C 1.53004 * 109.47161 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.46930 * 180.02562 * 18 17 15 20 20 C 1.32556 * 120.00113 * 126.35400 * 19 18 17 21 21 C 1.47816 * 119.99973 * 8.11810 * 20 19 18 22 22 C 1.39535 * 120.14071 * 221.57646 * 21 20 19 23 23 C 1.37978 * 119.85750 * 179.76477 * 22 21 20 24 24 C 1.38350 * 120.13558 * 0.48737 * 23 22 21 25 25 C 1.38345 * 120.29017 * 359.76165 * 24 23 22 26 26 C 1.37970 * 120.13827 * 0.02562 * 25 24 23 27 27 C 1.53033 * 109.54139 * 61.36351 * 12 11 10 28 28 H 1.09001 * 109.49830 * 58.58719 * 27 12 11 29 29 O 1.42903 * 109.50147 * 178.68250 * 27 12 11 30 30 C 1.46926 * 120.63014 * 143.97476 * 9 7 2 31 31 H 0.97002 * 119.99572 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.58504 * 113.80058 * 10 9 7 33 33 H 1.08991 * 109.58761 * 353.36764 * 10 9 7 34 34 H 1.08994 * 109.49272 * 185.41437 * 11 10 9 35 35 H 1.09004 * 109.49693 * 65.31933 * 11 10 9 36 36 H 0.97004 * 119.99495 * 265.00100 * 14 12 11 37 37 H 1.09004 * 109.46966 * 299.99784 * 17 15 14 38 38 H 1.08997 * 109.47469 * 59.99893 * 17 15 14 39 39 H 1.08995 * 109.47088 * 299.99862 * 18 17 15 40 40 H 1.08997 * 109.46933 * 60.00331 * 18 17 15 41 41 H 1.07997 * 119.99714 * 306.34707 * 19 18 17 42 42 H 1.08001 * 120.00318 * 188.12062 * 20 19 18 43 43 H 1.08003 * 120.07176 * 359.96862 * 22 21 20 44 44 H 1.07995 * 119.93418 * 180.22826 * 23 22 21 45 45 H 1.08004 * 119.85296 * 179.74959 * 24 23 22 46 46 H 1.07994 * 119.92739 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.07281 * 179.97438 * 26 25 24 48 48 H 0.96699 * 114.00659 * 180.02562 * 29 27 12 49 49 H 1.09003 * 109.58871 * 246.20242 * 30 9 7 50 50 H 1.09002 * 109.58912 * 6.48299 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0079 9 7 1.3255 -2.3881 -0.0082 10 6 0.0604 -2.5275 0.7259 11 6 0.1623 -3.7388 1.6582 12 6 0.5555 -4.9730 0.8433 13 1 -0.1888 -5.1473 0.0662 14 7 0.6215 -6.1402 1.7263 15 6 -0.4968 -6.8392 2.0041 16 8 -1.5577 -6.5023 1.5227 17 6 -0.4278 -8.0434 2.9075 18 6 -1.8246 -8.6498 3.0567 19 6 -1.7556 -9.8536 3.9607 20 6 -2.5519 -9.9356 5.0173 21 6 -3.6275 -8.9404 5.2112 22 6 -3.8804 -8.4206 6.4811 23 6 -4.8827 -7.4883 6.6546 24 6 -5.6427 -7.0763 5.5744 25 6 -5.4003 -7.5917 4.3136 26 6 -4.3982 -8.5213 4.1261 27 6 1.9235 -4.7449 0.1966 28 1 2.6637 -4.5459 0.9716 29 8 2.3037 -5.9096 -0.5390 30 6 1.8417 -3.5450 -0.7523 31 1 -0.4849 0.8401 -0.0004 32 1 -0.7568 -2.6771 0.0203 33 1 -0.1219 -1.6281 1.3139 34 1 -0.8014 -3.9111 2.1374 35 1 0.9190 -3.5493 2.4196 36 1 1.4701 -6.4098 2.1111 37 1 0.2450 -8.7840 2.4749 38 1 -0.0555 -7.7423 3.8866 39 1 -2.4977 -7.9094 3.4890 40 1 -2.1964 -8.9511 2.0775 41 1 -1.0576 -10.6496 3.7475 42 1 -2.4147 -10.7295 5.7366 43 1 -3.2908 -8.7448 7.3259 44 1 -5.0771 -7.0824 7.6363 45 1 -6.4287 -6.3493 5.7161 46 1 -5.9974 -7.2664 3.4746 47 1 -4.2102 -8.9233 3.1415 48 1 3.1630 -5.8357 -0.9762 49 1 1.1696 -3.7777 -1.5784 50 1 2.8337 -3.3161 -1.1417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100003395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:49 Heat of formation + Delta-G solvation = -31.512379 kcal Electronic energy + Delta-G solvation = -29662.755661 eV Core-core repulsion = 25655.279791 eV Total energy + Delta-G solvation = -4007.475870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.85887 -39.38733 -37.95754 -35.77574 -35.36982 -34.21852 -32.29023 -31.76136 -31.03749 -30.00644 -29.14470 -28.43047 -25.60657 -24.41179 -22.63994 -22.54216 -22.20869 -21.57533 -20.05205 -19.39459 -19.32454 -17.24855 -16.82229 -16.65027 -16.37095 -16.03975 -15.80882 -15.43268 -15.04103 -14.84495 -14.41076 -14.08426 -13.88642 -13.65109 -13.61923 -13.42514 -13.24774 -12.85628 -12.72094 -12.68484 -12.25743 -12.17429 -11.91580 -11.80821 -11.47076 -11.33048 -11.14090 -11.06573 -10.92492 -10.84303 -10.66815 -10.33144 -10.20179 -10.01803 -9.88400 -9.76558 -9.66530 -9.34180 -9.01235 -8.66963 -8.44669 -8.40187 -6.63889 -5.85138 -3.40574 0.89817 1.28773 2.14769 2.93435 3.33715 3.39357 3.40029 3.48317 3.70922 4.36831 4.51133 4.54927 4.72100 4.80608 4.82712 4.89668 5.00600 5.08157 5.23075 5.29936 5.30562 5.35320 5.39482 5.46558 5.50088 5.53761 5.59137 5.79892 5.81465 5.83321 5.93243 6.00803 6.04650 6.17048 6.23388 6.28787 6.38482 6.40736 6.44775 6.51369 6.57734 6.62104 6.71245 6.80628 6.86803 6.94063 7.35977 7.69982 7.73229 7.82351 7.92826 8.44831 8.54100 9.16157 9.73739 10.33866 11.22059 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002319 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.450317 B =12069.531617 C =13603.981994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.012 3.988 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.086 0.914 14 N -0.718 5.718 15 C 0.509 3.491 16 O -0.543 6.543 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.136 4.136 20 C -0.129 4.129 21 C -0.059 4.059 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.103 4.103 27 C 0.080 3.920 28 H 0.054 0.946 29 O -0.572 6.572 30 C 0.121 3.879 31 H 0.257 0.743 32 H 0.022 0.978 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.126 0.874 48 H 0.373 0.627 49 H 0.028 0.972 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -19.856 10.944 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.188 4.188 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.313 5.313 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.104 0.896 14 N -0.368 5.368 15 C 0.295 3.705 16 O -0.420 6.420 17 C -0.175 4.175 18 C -0.129 4.129 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.059 4.059 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.121 4.121 27 C 0.019 3.981 28 H 0.072 0.928 29 O -0.376 6.376 30 C -0.007 4.007 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.228 0.772 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.144 0.856 48 H 0.219 0.781 49 H 0.046 0.954 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.711 -19.653 10.799 22.914 hybrid contribution 1.526 0.966 0.000 1.806 sum -3.185 -18.687 10.799 21.817 Atomic orbital electron populations 1.69910 1.05378 1.25860 1.53212 1.25357 0.95543 0.98469 0.99386 0.86327 0.78890 0.83081 0.78141 1.20763 1.21476 1.20852 1.19065 0.90156 0.82991 1.47013 0.91912 1.43950 1.24390 1.08300 1.54664 1.20916 0.87058 0.94878 0.92624 1.22633 1.00492 0.96016 0.99627 1.20981 0.96502 0.84745 0.91900 0.89597 1.46122 1.10267 1.30484 1.49898 1.20575 0.84067 0.84162 0.81653 1.90700 1.29054 1.69618 1.52615 1.21600 0.99485 0.96234 1.00148 1.20816 0.96453 0.95664 0.99918 1.23334 0.98834 0.97799 0.95403 1.21643 0.95943 0.98719 0.98410 1.19061 0.96211 0.97236 0.93368 1.21231 0.97875 0.97533 0.96438 1.21077 0.96203 0.97937 0.98919 1.21231 0.99785 0.99838 0.92968 1.21147 0.97974 0.97183 0.97346 1.21423 0.94937 0.97320 0.98377 1.22783 0.95063 0.86086 0.94179 0.92758 1.86479 1.41273 1.39434 1.70400 1.21551 0.98604 0.87587 0.92939 0.93257 0.96005 0.88380 0.92089 0.92573 0.77199 0.89136 0.89198 0.89237 0.90235 0.86496 0.86236 0.86128 0.86148 0.86156 0.85840 0.85572 0.78082 0.95385 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.83 10.82 55.49 0.60 -25.23 16 2 C 0.01 0.33 5.25 -17.43 -0.09 0.24 16 3 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -7.03 9.55 -15.06 -0.14 -7.18 16 8 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 9 N -0.59 -14.55 2.99 -172.32 -0.51 -15.06 16 10 C 0.17 4.16 5.23 -3.71 -0.02 4.14 16 11 C -0.15 -2.97 5.65 -26.61 -0.15 -3.12 16 12 C 0.16 2.99 2.12 -67.90 -0.14 2.85 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 N -0.72 -10.79 4.92 -53.77 -0.26 -11.06 16 15 C 0.51 7.83 7.79 -10.99 -0.09 7.74 16 16 O -0.54 -10.57 15.64 5.56 0.09 -10.49 16 17 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 18 C -0.09 -1.00 3.38 -27.88 -0.09 -1.09 16 19 C -0.14 -1.17 9.45 -36.21 -0.34 -1.51 16 20 C -0.13 -1.13 9.77 -37.57 -0.37 -1.50 16 21 C -0.06 -0.61 5.03 -105.01 -0.53 -1.14 16 22 C -0.11 -1.10 9.79 -39.19 -0.38 -1.48 16 23 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 24 C -0.12 -1.21 10.04 -39.50 -0.40 -1.60 16 25 C -0.12 -1.28 10.03 -39.64 -0.40 -1.68 16 26 C -0.10 -1.13 7.36 -39.20 -0.29 -1.42 16 27 C 0.08 1.37 3.14 -26.62 -0.08 1.29 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.57 -8.59 13.16 -35.23 -0.46 -9.06 16 30 C 0.12 2.49 6.14 -3.71 -0.02 2.46 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 2.65 6.10 -51.93 -0.32 2.33 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.39 4.85 8.60 -40.82 -0.35 4.49 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 1.16 4.92 -51.93 -0.26 0.90 16 40 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.13 1.34 6.76 -52.48 -0.35 0.98 16 48 H 0.37 4.01 9.08 45.56 0.41 4.43 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -32.71 404.36 -10.71 -43.42 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.13 Total: 11.34 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -4.09 Total: -6.18 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.18 Total: -51.35 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.38 Total: -19.54 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.71 -10.71 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.912 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds