Wall clock time and date at job start Wed Apr 1 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48492 * 109.47009 * 239.99509 * 3 2 1 5 5 H 1.48501 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46900 * 119.99643 * 3 2 1 7 7 C 1.38808 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00372 * 180.45116 * 7 2 1 9 9 N 1.36941 * 120.00173 * 0.44762 * 7 2 1 10 10 C 1.46927 * 120.63055 * 324.00204 * 9 7 2 11 11 C 1.53201 * 108.77173 * 233.58284 * 10 9 7 12 12 C 1.53034 * 109.31265 * 305.36636 * 11 10 9 13 13 H 1.09002 * 109.45890 * 301.35405 * 12 11 10 14 14 N 1.46500 * 109.46035 * 181.38958 * 12 11 10 15 15 C 1.34775 * 120.00419 * 84.99448 * 14 12 11 16 16 O 1.21277 * 119.99653 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00203 * 179.72784 * 15 14 12 18 18 C 1.53004 * 109.47161 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.46930 * 180.02562 * 18 17 15 20 20 C 1.32556 * 120.00113 * 126.35400 * 19 18 17 21 21 C 1.47816 * 119.99973 * 8.11810 * 20 19 18 22 22 C 1.39535 * 120.14071 * 221.57646 * 21 20 19 23 23 C 1.37978 * 119.85750 * 179.76477 * 22 21 20 24 24 C 1.38350 * 120.13558 * 0.48737 * 23 22 21 25 25 C 1.38345 * 120.29017 * 359.76165 * 24 23 22 26 26 C 1.37970 * 120.13827 * 0.02562 * 25 24 23 27 27 C 1.53033 * 109.54139 * 61.36351 * 12 11 10 28 28 H 1.09001 * 109.49830 * 58.58719 * 27 12 11 29 29 O 1.42903 * 109.50147 * 178.68250 * 27 12 11 30 30 C 1.46926 * 120.63014 * 143.97476 * 9 7 2 31 31 H 0.97002 * 119.99572 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.58504 * 113.80058 * 10 9 7 33 33 H 1.08991 * 109.58761 * 353.36764 * 10 9 7 34 34 H 1.08994 * 109.49272 * 185.41437 * 11 10 9 35 35 H 1.09004 * 109.49693 * 65.31933 * 11 10 9 36 36 H 0.97004 * 119.99495 * 265.00100 * 14 12 11 37 37 H 1.09004 * 109.46966 * 299.99784 * 17 15 14 38 38 H 1.08997 * 109.47469 * 59.99893 * 17 15 14 39 39 H 1.08995 * 109.47088 * 299.99862 * 18 17 15 40 40 H 1.08997 * 109.46933 * 60.00331 * 18 17 15 41 41 H 1.07997 * 119.99714 * 306.34707 * 19 18 17 42 42 H 1.08001 * 120.00318 * 188.12062 * 20 19 18 43 43 H 1.08003 * 120.07176 * 359.96862 * 22 21 20 44 44 H 1.07995 * 119.93418 * 180.22826 * 23 22 21 45 45 H 1.08004 * 119.85296 * 179.74959 * 24 23 22 46 46 H 1.07994 * 119.92739 * 179.97438 * 25 24 23 47 47 H 1.08003 * 120.07281 * 179.97438 * 26 25 24 48 48 H 0.96699 * 114.00659 * 180.02562 * 29 27 12 49 49 H 1.09003 * 109.58871 * 246.20242 * 30 9 7 50 50 H 1.09002 * 109.58912 * 6.48299 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0079 9 7 1.3255 -2.3881 -0.0082 10 6 0.0604 -2.5275 0.7259 11 6 0.1623 -3.7388 1.6582 12 6 0.5555 -4.9730 0.8433 13 1 -0.1888 -5.1473 0.0662 14 7 0.6215 -6.1402 1.7263 15 6 -0.4968 -6.8392 2.0041 16 8 -1.5577 -6.5023 1.5227 17 6 -0.4278 -8.0434 2.9075 18 6 -1.8246 -8.6498 3.0567 19 6 -1.7556 -9.8536 3.9607 20 6 -2.5519 -9.9356 5.0173 21 6 -3.6275 -8.9404 5.2112 22 6 -3.8804 -8.4206 6.4811 23 6 -4.8827 -7.4883 6.6546 24 6 -5.6427 -7.0763 5.5744 25 6 -5.4003 -7.5917 4.3136 26 6 -4.3982 -8.5213 4.1261 27 6 1.9235 -4.7449 0.1966 28 1 2.6637 -4.5459 0.9716 29 8 2.3037 -5.9096 -0.5390 30 6 1.8417 -3.5450 -0.7523 31 1 -0.4849 0.8401 -0.0004 32 1 -0.7568 -2.6771 0.0203 33 1 -0.1219 -1.6281 1.3139 34 1 -0.8014 -3.9111 2.1374 35 1 0.9190 -3.5493 2.4196 36 1 1.4701 -6.4098 2.1111 37 1 0.2450 -8.7840 2.4749 38 1 -0.0555 -7.7423 3.8866 39 1 -2.4977 -7.9094 3.4890 40 1 -2.1964 -8.9511 2.0775 41 1 -1.0576 -10.6496 3.7475 42 1 -2.4147 -10.7295 5.7366 43 1 -3.2908 -8.7448 7.3259 44 1 -5.0771 -7.0824 7.6363 45 1 -6.4287 -6.3493 5.7161 46 1 -5.9974 -7.2664 3.4746 47 1 -4.2102 -8.9233 3.1415 48 1 3.1630 -5.8357 -0.9762 49 1 1.1696 -3.7777 -1.5784 50 1 2.8337 -3.3161 -1.1417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100003395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:48 Heat of formation + Delta-G solvation = -52.900739 kcal Electronic energy + Delta-G solvation = -29663.683130 eV Core-core repulsion = 25655.279791 eV Total energy + Delta-G solvation = -4008.403339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.12033 -40.22935 -39.41377 -36.96166 -36.57446 -35.68927 -33.84651 -32.95331 -31.86800 -31.57798 -30.30346 -29.75740 -27.21751 -25.64510 -24.03471 -23.56313 -23.38773 -22.88434 -21.43000 -20.91559 -20.07086 -18.94723 -18.03163 -17.94584 -17.47369 -17.15352 -16.88855 -16.71976 -16.27000 -15.95549 -15.67600 -15.49612 -15.33161 -14.92684 -14.85564 -14.65388 -14.32675 -14.26475 -13.87323 -13.81101 -13.50426 -13.40348 -13.16249 -12.98977 -12.94625 -12.77038 -12.58650 -12.39811 -12.15161 -12.12864 -12.04448 -11.92144 -11.89142 -11.59020 -11.39459 -11.07726 -10.79986 -10.58415 -10.53465 -9.99063 -9.78733 -9.12998 -8.64419 -7.90797 -5.50217 0.16014 0.51189 1.46047 1.47653 1.49949 1.56674 1.72691 2.26580 2.47147 2.94363 3.13226 3.27521 3.64572 3.75472 3.87756 3.90715 4.03992 4.04496 4.07880 4.14328 4.21947 4.25169 4.30833 4.37971 4.42185 4.55119 4.59120 4.63464 4.67806 4.74552 4.77164 4.85045 4.97680 5.01216 5.03753 5.10660 5.12270 5.16825 5.27446 5.39900 5.47766 5.54013 5.55487 5.60925 5.63724 5.68331 5.72927 5.93715 6.13657 6.38934 6.64667 6.88724 7.11388 7.36134 7.75264 8.31933 9.14965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.002319 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.450317 B =12069.531617 C =13603.981994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.270 4.270 8 H 0.075 0.925 9 N -0.605 5.605 10 C 0.181 3.819 11 C -0.129 4.129 12 C 0.170 3.830 13 H 0.050 0.950 14 N -0.706 5.706 15 C 0.502 3.498 16 O -0.592 6.592 17 C -0.122 4.122 18 C -0.091 4.091 19 C -0.130 4.130 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.120 4.120 27 C 0.103 3.897 28 H 0.073 0.927 29 O -0.570 6.570 30 C 0.117 3.883 31 H 0.251 0.749 32 H -0.014 1.014 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.134 0.866 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.396 0.604 49 H 0.009 0.991 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 -21.862 12.652 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.802 3.198 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.400 4.400 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.064 3.936 13 H 0.068 0.932 14 N -0.357 5.357 15 C 0.291 3.709 16 O -0.472 6.472 17 C -0.161 4.161 18 C -0.128 4.128 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.070 4.070 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.138 4.138 27 C 0.042 3.958 28 H 0.091 0.909 29 O -0.377 6.377 30 C -0.009 4.009 31 H 0.061 0.939 32 H 0.005 0.995 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.250 0.750 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.152 0.848 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.246 0.754 49 H 0.027 0.973 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.712 -21.711 12.510 25.115 hybrid contribution 0.584 1.553 -0.596 1.763 sum -1.128 -20.157 11.914 23.442 Atomic orbital electron populations 1.70120 1.07023 1.26122 1.54902 1.26182 0.96270 1.02006 0.99700 0.85248 0.77450 0.78553 0.78582 1.19905 1.22314 1.19715 1.19487 0.90858 0.83802 1.45866 0.90738 1.44146 1.24082 1.09200 1.55544 1.20584 0.86447 0.95359 0.92159 1.22338 1.00470 0.95235 0.98918 1.20572 0.96466 0.85127 0.91405 0.93172 1.45912 1.11371 1.29229 1.49198 1.21518 0.83085 0.84959 0.81364 1.90692 1.30937 1.71043 1.54547 1.21617 1.00032 0.94443 1.00047 1.20733 0.96136 0.96308 0.99647 1.23368 0.99608 0.97327 0.94444 1.21851 0.95199 0.98787 0.99087 1.19352 0.96608 0.97674 0.93378 1.21563 0.98021 0.97288 0.96887 1.21417 0.95886 0.97760 0.99703 1.21491 1.00496 1.00258 0.92897 1.21345 0.98542 0.97831 0.98084 1.21512 0.95637 0.97935 0.98669 1.22290 0.94593 0.85209 0.93703 0.90894 1.86449 1.43177 1.37684 1.70425 1.21715 0.98622 0.87575 0.93007 0.93933 0.99540 0.91505 0.93025 0.91373 0.74967 0.85875 0.86982 0.91740 0.91702 0.83619 0.83810 0.83910 0.83965 0.84778 0.85750 0.86173 0.75412 0.97274 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.82 10.82 21.65 0.23 -55.58 16 2 C -0.05 -2.53 5.25 84.86 0.45 -2.08 16 3 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.27 -14.46 9.55 84.03 0.80 -13.66 16 8 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.60 -30.28 2.99 -699.09 -2.09 -32.37 16 10 C 0.18 9.22 5.23 86.37 0.45 9.67 16 11 C -0.13 -5.31 5.65 30.67 0.17 -5.14 16 12 C 0.17 6.20 2.12 45.01 0.10 6.29 16 13 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 14 N -0.71 -19.97 4.92 -442.43 -2.18 -22.15 16 15 C 0.50 14.98 7.79 87.66 0.68 15.66 16 16 O -0.59 -23.81 15.64 -3.02 -0.05 -23.86 16 17 C -0.12 -2.28 5.68 29.85 0.17 -2.11 16 18 C -0.09 -1.89 3.38 29.85 0.10 -1.79 16 19 C -0.13 -1.88 9.45 24.54 0.23 -1.65 16 20 C -0.13 -2.00 9.77 23.66 0.23 -1.77 16 21 C -0.07 -1.41 5.03 -20.12 -0.10 -1.51 16 22 C -0.12 -2.17 9.79 22.52 0.22 -1.95 16 23 C -0.13 -2.37 10.03 22.23 0.22 -2.15 16 24 C -0.13 -2.73 10.04 22.32 0.22 -2.50 16 25 C -0.14 -3.22 10.03 22.23 0.22 -3.00 16 26 C -0.12 -2.75 7.36 22.52 0.17 -2.59 16 27 C 0.10 3.35 3.14 30.67 0.10 3.45 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 O -0.57 -15.40 13.16 -148.98 -1.96 -17.36 16 30 C 0.12 4.76 6.14 86.36 0.53 5.29 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 32 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.07 3.81 6.10 -2.39 -0.01 3.80 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 36 H 0.41 8.68 8.60 -92.71 -0.80 7.89 16 37 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.69 4.92 -2.39 -0.01 1.68 16 40 H 0.06 1.52 8.05 -2.39 -0.02 1.50 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 45 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.12 2.76 6.76 -2.91 -0.02 2.74 16 48 H 0.40 6.97 9.08 -74.06 -0.67 6.30 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.08 2.81 7.93 -2.39 -0.02 2.79 16 Total: -1.00 -75.00 404.36 0.44 -74.57 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.52 Total: 32.34 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 4.97 Total: -1.52 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.03 Total: -110.10 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.01 Total: -41.23 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -75.00 0.44 -74.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100003395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.668 kcal (2) G-P(sol) polarization free energy of solvation -75.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds