Wall clock time and date at job start Wed Apr 1 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00240 * 2 1 4 4 H 1.48500 * 109.47373 * 240.00489 * 3 2 1 5 5 H 1.48503 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47147 * 120.00251 * 3 2 1 7 7 C 1.38813 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99610 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00126 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61499 * 205.00074 * 10 9 7 12 12 C 1.53783 * 87.07981 * 219.93404 * 11 10 9 13 13 C 1.53005 * 113.61306 * 139.98061 * 12 11 10 14 14 N 1.46501 * 109.46889 * 176.52835 * 13 12 11 15 15 C 1.34780 * 120.00017 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99699 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00301 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.47140 * 180.02562 * 17 15 14 19 19 C 1.42903 * 113.99629 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.32570 * 119.99948 * 134.99729 * 20 19 18 22 22 C 1.47811 * 120.00017 * 179.97438 * 21 20 19 23 23 C 1.39537 * 120.13903 * 359.73380 * 22 21 20 24 24 C 1.37982 * 119.85004 * 179.67550 * 23 22 21 25 25 C 1.38340 * 120.14036 * 0.61830 * 24 23 22 26 26 C 1.38347 * 120.28941 * 359.67126 * 25 24 23 27 27 C 1.37976 * 120.14092 * 0.02562 * 26 25 24 28 28 C 1.53784 * 87.17223 * 25.39194 * 12 11 10 29 29 H 0.97000 * 119.99471 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00670 * 0.02562 * 9 7 2 31 31 H 1.08998 * 112.85042 * 336.19663 * 10 9 7 32 32 H 1.08993 * 113.61906 * 105.38692 * 11 10 9 33 33 H 1.09008 * 113.61800 * 334.48021 * 11 10 9 34 34 H 1.08995 * 113.61713 * 270.79977 * 12 11 10 35 35 H 1.08996 * 109.46997 * 56.53197 * 13 12 11 36 36 H 1.08995 * 109.47400 * 296.52947 * 13 12 11 37 37 H 0.97000 * 120.00405 * 0.02562 * 14 13 12 38 38 H 1.09007 * 109.46405 * 60.00333 * 17 15 14 39 39 H 1.09004 * 109.47198 * 300.00818 * 17 15 14 40 40 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 41 41 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 42 42 H 1.07993 * 120.00152 * 315.00421 * 20 19 18 43 43 H 1.08004 * 119.99647 * 359.97438 * 21 20 19 44 44 H 1.07993 * 120.07125 * 359.97028 * 23 22 21 45 45 H 1.07995 * 119.92334 * 180.31745 * 24 23 22 46 46 H 1.08004 * 119.85402 * 179.70329 * 25 24 23 47 47 H 1.08000 * 119.92504 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.06952 * 180.02562 * 27 26 25 49 49 H 1.09000 * 113.61646 * 89.15794 * 28 12 11 50 50 H 1.08999 * 113.61196 * 220.05747 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.2601 -4.8287 -0.5960 12 6 1.8497 -5.6981 0.5272 13 6 0.8477 -6.6867 1.1270 14 7 1.5223 -7.5207 2.1248 15 6 0.8318 -8.4690 2.7885 16 8 -0.3479 -8.6322 2.5593 17 6 1.5259 -9.3274 3.8144 18 8 0.5901 -10.2506 4.3747 19 6 1.1494 -11.1162 5.3647 20 6 0.0798 -12.0417 5.8848 21 6 0.3363 -13.3338 6.0338 22 6 -0.7126 -14.2415 6.5444 23 6 -1.9721 -13.7405 6.8757 24 6 -2.9489 -14.5943 7.3456 25 6 -2.6777 -15.9420 7.5004 26 6 -1.4291 -16.4439 7.1794 27 6 -0.4455 -15.6018 6.7027 28 6 2.0029 -4.4043 1.3442 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0656 -3.5639 -0.4059 32 1 1.5906 -5.1203 -1.5929 33 1 0.1797 -4.7008 -0.5278 34 1 2.7994 -6.1644 0.2656 35 1 0.4446 -7.3199 0.3368 36 1 0.0352 -6.1372 1.6023 37 1 2.4658 -7.3900 2.3083 38 1 1.9298 -8.6943 4.6045 39 1 2.3380 -9.8773 3.3387 40 1 1.5448 -10.5201 6.1871 41 1 1.9541 -11.7029 4.9215 42 1 -0.8957 -11.6525 6.1359 43 1 1.3118 -13.7232 5.7821 44 1 -2.1833 -12.6878 6.7602 45 1 -3.9257 -14.2087 7.5975 46 1 -3.4443 -16.6053 7.8731 47 1 -1.2239 -17.4971 7.3022 48 1 0.5287 -15.9949 6.4521 49 1 1.1261 -4.1601 1.9439 50 1 2.9323 -4.3537 1.9114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100441536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:04 Heat of formation + Delta-G solvation = -11.412332 kcal Electronic energy + Delta-G solvation = -27013.920433 eV Core-core repulsion = 23007.316167 eV Total energy + Delta-G solvation = -4006.604266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.96727 -39.60759 -38.64042 -37.84348 -35.00288 -34.66963 -33.30327 -31.40961 -31.00402 -30.36553 -28.97205 -26.81822 -25.65099 -25.10209 -23.78708 -23.35482 -22.35356 -21.09204 -20.81906 -19.83358 -19.06704 -17.78990 -17.30065 -17.03538 -16.99805 -16.63477 -15.90113 -15.65880 -15.36865 -15.06723 -14.96529 -14.68401 -14.39018 -14.02159 -13.79814 -13.64995 -13.48300 -13.35890 -13.22915 -12.97037 -12.65244 -12.51870 -11.92284 -11.84575 -11.80216 -11.51586 -11.40969 -11.25761 -11.23872 -10.83391 -10.75187 -10.54263 -10.25655 -10.17325 -10.10104 -9.84293 -9.82311 -9.49307 -9.37067 -9.06379 -8.87359 -8.55792 -6.97442 -5.78982 -3.08039 0.45682 0.99187 1.96974 2.52170 2.70396 3.42427 3.46889 3.48166 3.49713 3.71283 4.31266 4.35012 4.54135 4.55093 4.57519 4.62736 4.71664 4.76349 4.79882 4.88205 4.93153 4.96883 4.99642 5.00791 5.09276 5.17198 5.21489 5.45657 5.48942 5.53057 5.60095 5.80838 5.83134 5.83965 5.91775 5.96997 6.08095 6.10093 6.14054 6.23336 6.29764 6.33778 6.34552 6.41880 6.56167 6.57242 6.66794 6.81177 7.09890 7.41173 7.67452 8.14232 8.39537 9.50507 10.08806 10.42984 11.43326 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.001167 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.239551 B =23982.433116 C =24260.920441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.165 3.835 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.724 5.724 15 C 0.509 3.491 16 O -0.521 6.521 17 C 0.044 3.956 18 O -0.358 6.358 19 C 0.089 3.911 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.055 4.055 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.110 4.110 28 C -0.161 4.161 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.078 0.922 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.382 -32.932 14.461 36.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.011 3.989 14 N -0.377 5.377 15 C 0.294 3.706 16 O -0.396 6.396 17 C -0.036 4.036 18 O -0.277 6.277 19 C 0.013 3.987 20 C -0.152 4.152 21 C -0.130 4.130 22 C -0.055 4.055 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.128 4.128 28 C -0.203 4.203 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.097 0.903 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.406 -32.860 14.213 35.883 hybrid contribution 0.912 0.962 0.259 1.351 sum 3.318 -31.897 14.472 35.184 Atomic orbital electron populations 1.69652 1.05155 1.25890 1.57291 1.24764 0.95500 0.97769 1.02750 0.86272 0.78551 0.83530 0.77846 1.21218 1.21658 1.21250 1.19261 0.91039 0.84276 1.43190 0.91151 1.42403 1.05770 0.99866 1.86986 1.21551 0.95314 0.85064 0.92749 1.23446 1.01083 0.96970 0.96700 1.22644 0.98373 0.94376 0.99248 1.21454 0.95439 0.91900 0.90145 1.45928 1.13813 1.36289 1.41693 1.20192 0.87540 0.80836 0.82046 1.90748 1.15525 1.68399 1.64917 1.22223 0.92352 0.92594 0.96418 1.88057 1.34787 1.48874 1.55940 1.21502 0.94594 0.91575 0.91005 1.23097 1.00001 0.93826 0.98303 1.21593 0.98031 0.92772 1.00577 1.19022 0.93735 0.93460 0.99313 1.21405 0.92768 1.00192 0.98729 1.21135 0.99310 0.93686 0.99447 1.21247 0.97043 0.95602 1.00056 1.21108 0.93545 0.99774 0.99454 1.21269 0.99454 0.92655 0.99412 1.23981 1.01333 0.94970 0.99973 0.93372 0.78048 0.90682 0.91960 0.90068 0.89354 0.91672 0.91111 0.76585 0.90072 0.90226 0.91670 0.92343 0.85831 0.86124 0.85523 0.85817 0.86057 0.85932 0.85826 0.90342 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.67 5.41 -52.55 -0.28 -17.95 16 10 C 0.17 3.14 4.48 -67.03 -0.30 2.84 16 11 C -0.14 -2.22 7.40 -25.92 -0.19 -2.42 16 12 C -0.13 -1.64 3.75 -89.80 -0.34 -1.97 16 13 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 14 N -0.72 -7.75 5.56 -60.29 -0.33 -8.09 16 15 C 0.51 6.42 7.91 -10.98 -0.09 6.33 16 16 O -0.52 -9.23 16.50 -14.35 -0.24 -9.47 16 17 C 0.04 0.38 6.42 36.01 0.23 0.61 16 18 O -0.36 -3.98 9.86 -55.14 -0.54 -4.52 16 19 C 0.09 0.65 6.36 36.01 0.23 0.88 16 20 C -0.13 -1.05 9.31 -36.21 -0.34 -1.39 16 21 C -0.11 -0.79 9.51 -37.57 -0.36 -1.15 16 22 C -0.06 -0.44 5.87 -105.02 -0.62 -1.05 16 23 C -0.11 -0.89 9.40 -39.19 -0.37 -1.26 16 24 C -0.12 -0.83 10.03 -39.64 -0.40 -1.23 16 25 C -0.12 -0.78 10.04 -39.50 -0.40 -1.18 16 26 C -0.12 -0.76 10.03 -39.64 -0.40 -1.16 16 27 C -0.11 -0.75 9.79 -39.20 -0.38 -1.13 16 28 C -0.16 -2.59 7.45 -25.83 -0.19 -2.78 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.39 10.21 7.92 -40.82 -0.32 9.89 16 31 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.35 8.08 -51.92 -0.42 0.93 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.06 7.87 -51.93 -0.41 0.65 16 37 H 0.40 3.03 8.47 -40.82 -0.35 2.69 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.32 7.88 -51.93 -0.41 -0.09 16 42 H 0.12 1.02 6.04 -52.49 -0.32 0.70 16 43 H 0.12 0.63 7.92 -52.48 -0.42 0.21 16 44 H 0.13 0.90 6.17 -52.49 -0.32 0.58 16 45 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.12 0.53 8.06 -52.48 -0.42 0.11 16 47 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 48 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 421.69 15.07 6.35 6.35 Total: -1.00 -35.12 421.69 -11.51 -46.63 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -7.99 Total: 8.98 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -4.17 Total: -11.70 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.11 Total: -53.43 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.78 Total: -13.99 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.12 -11.51 -46.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100441536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.218 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds