Wall clock time and date at job start Wed Apr 1 2020 03:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00240 * 2 1 4 4 H 1.48500 * 109.47373 * 240.00489 * 3 2 1 5 5 H 1.48503 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47147 * 120.00251 * 3 2 1 7 7 C 1.38813 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00214 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99610 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00126 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61499 * 205.00074 * 10 9 7 12 12 C 1.53783 * 87.07981 * 219.93404 * 11 10 9 13 13 C 1.53005 * 113.61306 * 139.98061 * 12 11 10 14 14 N 1.46501 * 109.46889 * 176.52835 * 13 12 11 15 15 C 1.34780 * 120.00017 * 179.97438 * 14 13 12 16 16 O 1.21281 * 119.99699 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00301 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.47140 * 180.02562 * 17 15 14 19 19 C 1.42903 * 113.99629 * 180.02562 * 18 17 15 20 20 C 1.50701 * 109.46878 * 179.97438 * 19 18 17 21 21 C 1.32570 * 119.99948 * 134.99729 * 20 19 18 22 22 C 1.47811 * 120.00017 * 179.97438 * 21 20 19 23 23 C 1.39537 * 120.13903 * 359.73380 * 22 21 20 24 24 C 1.37982 * 119.85004 * 179.67550 * 23 22 21 25 25 C 1.38340 * 120.14036 * 0.61830 * 24 23 22 26 26 C 1.38347 * 120.28941 * 359.67126 * 25 24 23 27 27 C 1.37976 * 120.14092 * 0.02562 * 26 25 24 28 28 C 1.53784 * 87.17223 * 25.39194 * 12 11 10 29 29 H 0.97000 * 119.99471 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00670 * 0.02562 * 9 7 2 31 31 H 1.08998 * 112.85042 * 336.19663 * 10 9 7 32 32 H 1.08993 * 113.61906 * 105.38692 * 11 10 9 33 33 H 1.09008 * 113.61800 * 334.48021 * 11 10 9 34 34 H 1.08995 * 113.61713 * 270.79977 * 12 11 10 35 35 H 1.08996 * 109.46997 * 56.53197 * 13 12 11 36 36 H 1.08995 * 109.47400 * 296.52947 * 13 12 11 37 37 H 0.97000 * 120.00405 * 0.02562 * 14 13 12 38 38 H 1.09007 * 109.46405 * 60.00333 * 17 15 14 39 39 H 1.09004 * 109.47198 * 300.00818 * 17 15 14 40 40 H 1.09002 * 109.47382 * 59.99956 * 19 18 17 41 41 H 1.09001 * 109.46938 * 299.99942 * 19 18 17 42 42 H 1.07993 * 120.00152 * 315.00421 * 20 19 18 43 43 H 1.08004 * 119.99647 * 359.97438 * 21 20 19 44 44 H 1.07993 * 120.07125 * 359.97028 * 23 22 21 45 45 H 1.07995 * 119.92334 * 180.31745 * 24 23 22 46 46 H 1.08004 * 119.85402 * 179.70329 * 25 24 23 47 47 H 1.08000 * 119.92504 * 180.02562 * 26 25 24 48 48 H 1.08000 * 120.06952 * 180.02562 * 27 26 25 49 49 H 1.09000 * 113.61646 * 89.15794 * 28 12 11 50 50 H 1.08999 * 113.61196 * 220.05747 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.2601 -4.8287 -0.5960 12 6 1.8497 -5.6981 0.5272 13 6 0.8477 -6.6867 1.1270 14 7 1.5223 -7.5207 2.1248 15 6 0.8318 -8.4690 2.7885 16 8 -0.3479 -8.6322 2.5593 17 6 1.5259 -9.3274 3.8144 18 8 0.5901 -10.2506 4.3747 19 6 1.1494 -11.1162 5.3647 20 6 0.0798 -12.0417 5.8848 21 6 0.3363 -13.3338 6.0338 22 6 -0.7126 -14.2415 6.5444 23 6 -1.9721 -13.7405 6.8757 24 6 -2.9489 -14.5943 7.3456 25 6 -2.6777 -15.9420 7.5004 26 6 -1.4291 -16.4439 7.1794 27 6 -0.4455 -15.6018 6.7027 28 6 2.0029 -4.4043 1.3442 29 1 -0.4849 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0656 -3.5639 -0.4059 32 1 1.5906 -5.1203 -1.5929 33 1 0.1797 -4.7008 -0.5278 34 1 2.7994 -6.1644 0.2656 35 1 0.4446 -7.3199 0.3368 36 1 0.0352 -6.1372 1.6023 37 1 2.4658 -7.3900 2.3083 38 1 1.9298 -8.6943 4.6045 39 1 2.3380 -9.8773 3.3387 40 1 1.5448 -10.5201 6.1871 41 1 1.9541 -11.7029 4.9215 42 1 -0.8957 -11.6525 6.1359 43 1 1.3118 -13.7232 5.7821 44 1 -2.1833 -12.6878 6.7602 45 1 -3.9257 -14.2087 7.5975 46 1 -3.4443 -16.6053 7.8731 47 1 -1.2239 -17.4971 7.3022 48 1 0.5287 -15.9949 6.4521 49 1 1.1261 -4.1601 1.9439 50 1 2.9323 -4.3537 1.9114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100441536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:03 Heat of formation + Delta-G solvation = -32.992356 kcal Electronic energy + Delta-G solvation = -27014.856213 eV Core-core repulsion = 23007.316167 eV Total energy + Delta-G solvation = -4007.540046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.95992 -40.11893 -39.84294 -38.64301 -36.04791 -35.51147 -35.00828 -32.26670 -31.89627 -31.47900 -29.96586 -27.80711 -26.44721 -26.38529 -25.59165 -23.86037 -22.85536 -22.47021 -21.78768 -20.54592 -20.28576 -19.04646 -18.38226 -18.08866 -17.74608 -17.30594 -16.80661 -16.59378 -16.30312 -16.21398 -15.90619 -15.68464 -15.50277 -15.20057 -14.89311 -14.70697 -14.38467 -14.22871 -13.97591 -13.89333 -13.44742 -13.27693 -13.23126 -13.18315 -12.97648 -12.90313 -12.61345 -12.34357 -12.23785 -12.07093 -11.99360 -11.75317 -11.58005 -11.53747 -11.29344 -11.09657 -10.84994 -10.74961 -10.67508 -10.09175 -9.87810 -9.08109 -8.96829 -7.93593 -5.22077 -0.06843 0.48400 1.43409 1.47984 1.51001 1.57134 1.58231 1.92890 2.57763 2.95498 3.08147 3.38448 3.65871 3.76560 3.77689 3.85349 3.86321 3.96272 4.09344 4.18480 4.21230 4.26686 4.27052 4.30458 4.36775 4.40876 4.43711 4.46738 4.53338 4.56902 4.61734 4.68217 4.77850 4.98887 5.00411 5.05326 5.06429 5.12525 5.23781 5.34104 5.36390 5.43233 5.45325 5.53755 5.60277 5.62108 5.74943 5.82961 6.06928 6.10679 6.28499 6.58986 7.25674 7.33975 8.12699 8.34246 9.29890 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.001167 C = 0.001154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.239551 B =23982.433116 C =24260.920441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.142 3.858 11 C -0.139 4.139 12 C -0.093 4.093 13 C 0.138 3.862 14 N -0.708 5.708 15 C 0.503 3.497 16 O -0.583 6.583 17 C 0.048 3.952 18 O -0.399 6.399 19 C 0.089 3.911 20 C -0.154 4.154 21 C -0.105 4.105 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.117 4.117 28 C -0.153 4.153 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.420 0.580 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.123 0.877 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.053 0.947 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.597 -35.093 14.988 38.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.178 4.178 12 C -0.112 4.112 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.290 3.710 16 O -0.463 6.463 17 C -0.031 4.031 18 O -0.318 6.318 19 C 0.014 3.986 20 C -0.172 4.172 21 C -0.123 4.123 22 C -0.077 4.077 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.134 4.134 28 C -0.194 4.194 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.144 0.856 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.258 0.742 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.125 0.875 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.163 0.837 48 H 0.161 0.839 49 H 0.071 0.929 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.722 -35.065 14.754 38.470 hybrid contribution -0.086 1.511 0.113 1.518 sum 5.636 -33.553 14.867 37.130 Atomic orbital electron populations 1.69825 1.06797 1.26074 1.59704 1.25592 0.96307 1.01249 1.03862 0.85217 0.77172 0.79136 0.78283 1.20190 1.22498 1.20293 1.19726 0.91662 0.85397 1.40876 0.90172 1.42638 1.05329 1.01293 1.87544 1.22017 0.95677 0.83798 0.95297 1.23338 0.99839 0.96054 0.98602 1.22471 0.99458 0.92859 0.96398 1.21211 0.94968 0.91908 0.90472 1.45748 1.14615 1.35234 1.40638 1.21048 0.86951 0.80835 0.82199 1.90724 1.18345 1.70226 1.66957 1.22350 0.91925 0.92610 0.96210 1.88008 1.36823 1.49894 1.57086 1.21658 0.94582 0.91428 0.90921 1.23149 0.99973 0.94552 0.99519 1.21782 0.98652 0.92310 0.99544 1.19284 0.93975 0.94371 1.00023 1.21570 0.93560 1.00392 0.99663 1.21381 0.99748 0.94233 0.99582 1.21569 0.97831 0.95576 0.99619 1.21462 0.93312 1.00957 0.98756 1.21577 1.00570 0.92268 0.99021 1.23745 1.01123 0.96021 0.98479 0.94136 0.79753 0.89920 0.90244 0.91768 0.85580 0.91837 0.93888 0.74249 0.87144 0.86519 0.90047 0.90009 0.87474 0.83947 0.85947 0.84735 0.84094 0.83664 0.83850 0.92857 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -13.49 9.97 84.03 0.84 -12.65 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.72 5.41 -320.17 -1.73 -38.46 16 10 C 0.14 5.24 4.48 45.57 0.20 5.44 16 11 C -0.14 -4.18 7.40 31.12 0.23 -3.95 16 12 C -0.09 -2.15 3.75 -10.26 -0.04 -2.19 16 13 C 0.14 3.41 5.50 86.38 0.47 3.89 16 14 N -0.71 -13.56 5.56 -463.06 -2.57 -16.13 16 15 C 0.50 12.06 7.91 87.66 0.69 12.75 16 16 O -0.58 -21.13 16.50 16.00 0.26 -20.86 16 17 C 0.05 0.70 6.42 71.24 0.46 1.16 16 18 O -0.40 -8.41 9.86 -129.94 -1.28 -9.69 16 19 C 0.09 1.14 6.36 71.24 0.45 1.60 16 20 C -0.15 -2.39 9.31 24.53 0.23 -2.16 16 21 C -0.11 -1.40 9.51 23.65 0.22 -1.17 16 22 C -0.08 -1.19 5.87 -20.12 -0.12 -1.30 16 23 C -0.13 -2.23 9.40 22.52 0.21 -2.01 16 24 C -0.13 -1.87 10.03 22.23 0.22 -1.65 16 25 C -0.13 -1.53 10.04 22.32 0.22 -1.30 16 26 C -0.13 -1.41 10.03 22.23 0.22 -1.19 16 27 C -0.12 -1.44 9.79 22.52 0.22 -1.22 16 28 C -0.15 -4.67 7.45 31.18 0.23 -4.44 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 30 H 0.37 20.40 7.92 -92.71 -0.73 19.66 16 31 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 33 H 0.06 2.17 8.08 -2.38 -0.02 2.15 16 34 H 0.13 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.32 7.87 -2.39 -0.02 1.30 16 37 H 0.42 4.70 8.47 -92.71 -0.79 3.92 16 38 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.64 7.88 -2.39 -0.02 0.62 16 42 H 0.11 1.94 6.04 -2.91 -0.02 1.93 16 43 H 0.14 1.17 7.92 -2.91 -0.02 1.15 16 44 H 0.12 1.99 6.17 -2.91 -0.02 1.97 16 45 H 0.13 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 47 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 48 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 49 H 0.05 1.92 7.92 -2.39 -0.02 1.90 16 50 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -80.25 421.69 1.86 -78.39 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.58 Total: 33.34 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.45 Total: -14.44 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.02 Total: -114.68 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -1.02 Total: -30.56 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.25 1.86 -78.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100441536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.396 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds