Wall clock time and date at job start Wed Apr 1 2020 02:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99578 * 2 1 4 4 H 1.48499 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47298 * 299.99635 * 3 2 1 6 6 H 1.48504 * 109.47064 * 60.00241 * 3 2 1 7 7 C 1.38812 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99881 * 180.02562 * 9 7 2 11 11 C 1.53775 * 113.61468 * 204.99927 * 10 9 7 12 12 C 1.53784 * 87.08286 * 219.93199 * 11 10 9 13 13 C 1.52999 * 113.61551 * 139.97879 * 12 11 10 14 14 N 1.46506 * 109.46775 * 176.53104 * 13 12 11 15 15 C 1.34775 * 119.99653 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00155 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99857 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47597 * 173.90144 * 17 15 14 19 19 H 1.09005 * 109.43504 * 53.90991 * 18 17 15 20 20 C 1.53081 * 109.43808 * 293.99309 * 18 17 15 21 21 C 1.53408 * 108.27808 * 191.71297 * 20 18 17 22 22 O 1.42823 * 108.38748 * 64.74007 * 21 20 18 23 23 C 1.35852 * 117.87834 * 310.92802 * 22 21 20 24 24 C 1.39148 * 118.50315 * 196.93761 * 23 22 21 25 25 C 1.37965 * 120.21395 * 180.22920 * 24 23 22 26 26 C 1.38292 * 119.96065 * 359.97438 * 25 24 23 27 27 C 1.38098 * 119.98478 * 359.91501 * 26 25 24 28 28 C 1.38371 * 121.80571 * 17.00729 * 23 22 21 29 29 C 1.53777 * 87.16911 * 25.38580 * 12 11 10 30 30 H 0.96996 * 120.00477 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00201 * 359.97438 * 9 7 2 32 32 H 1.09006 * 112.84564 * 336.18924 * 10 9 7 33 33 H 1.09004 * 113.62057 * 105.38196 * 11 10 9 34 34 H 1.08997 * 113.68983 * 334.48839 * 11 10 9 35 35 H 1.08999 * 113.60984 * 270.79823 * 12 11 10 36 36 H 1.09000 * 109.47240 * 56.53130 * 13 12 11 37 37 H 1.08997 * 109.47041 * 296.52860 * 13 12 11 38 38 H 0.96998 * 120.00276 * 359.97438 * 14 13 12 39 39 H 1.09003 * 109.47398 * 53.90101 * 17 15 14 40 40 H 1.08999 * 109.47555 * 293.90304 * 17 15 14 41 41 H 1.08998 * 109.70040 * 311.40930 * 20 18 17 42 42 H 1.09004 * 109.69914 * 71.97688 * 20 18 17 43 43 H 1.08995 * 109.68146 * 184.46145 * 21 20 18 44 44 H 1.08997 * 109.68235 * 305.01314 * 21 20 18 45 45 H 1.07995 * 119.89072 * 0.20282 * 24 23 22 46 46 H 1.08002 * 120.01770 * 179.97438 * 25 24 23 47 47 H 1.08005 * 120.00499 * 179.97438 * 26 25 24 48 48 H 1.07995 * 119.84675 * 180.02562 * 27 26 25 49 49 H 1.09007 * 113.61556 * 89.16511 * 29 12 11 50 50 H 1.09005 * 113.61742 * 220.06205 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.2607 -4.8290 -0.5939 12 6 1.8495 -5.6979 0.5301 13 6 0.8472 -6.6862 1.1297 14 7 1.5213 -7.5198 2.1283 15 6 0.8306 -8.4685 2.7911 16 8 -0.3490 -8.6318 2.5612 17 6 1.5240 -9.3263 3.8179 18 6 0.4936 -10.2093 4.5247 19 1 -0.0756 -10.7682 3.7818 20 6 -0.4579 -9.3295 5.3394 21 6 -1.2831 -10.2375 6.2602 22 8 -0.3977 -10.8553 7.1952 23 6 0.7265 -11.4449 6.7113 24 6 1.4078 -12.3442 7.5257 25 6 2.5560 -12.9598 7.0717 26 6 3.0323 -12.6835 5.8031 27 6 2.3575 -11.7932 4.9912 28 6 1.2040 -11.1726 5.4414 29 6 2.0022 -4.4037 1.3466 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.0660 -3.5639 -0.4031 33 1 1.5920 -5.1209 -1.5905 34 1 0.1802 -4.7023 -0.5272 35 1 2.7995 -6.1642 0.2693 36 1 0.4447 -7.3199 0.3394 37 1 0.0344 -6.1365 1.6042 38 1 2.4648 -7.3894 2.3119 39 1 2.0189 -8.6882 4.5501 40 1 2.2648 -9.9558 3.3250 41 1 0.1169 -8.6234 5.9387 42 1 -1.1219 -8.7858 4.6673 43 1 -2.0241 -9.6428 6.7943 44 1 -1.7840 -11.0032 5.6679 45 1 1.0368 -12.5607 8.5165 46 1 3.0825 -13.6570 7.7066 47 1 3.9314 -13.1646 5.4471 48 1 2.7312 -11.5794 4.0008 49 1 1.1250 -4.1593 1.9457 50 1 2.9313 -4.3527 1.9144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100564702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:17 Heat of formation + Delta-G solvation = -31.040738 kcal Electronic energy + Delta-G solvation = -28940.277113 eV Core-core repulsion = 24932.821695 eV Total energy + Delta-G solvation = -4007.455418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22738 -39.82212 -38.51352 -37.79891 -35.56358 -34.64498 -33.31990 -31.05221 -30.64436 -30.42460 -29.59544 -27.18251 -25.13030 -24.70193 -24.03184 -23.67367 -22.49244 -21.08281 -20.58472 -20.04071 -19.07555 -18.23048 -17.43166 -17.05683 -16.82382 -16.16375 -16.05139 -15.83991 -15.24545 -14.87205 -14.83314 -14.55154 -14.27541 -14.19487 -13.79366 -13.58581 -13.47129 -13.33296 -13.12009 -12.93750 -12.84935 -12.16111 -11.99212 -11.89611 -11.81358 -11.63569 -11.42564 -11.27635 -11.21454 -11.01307 -10.87668 -10.64643 -10.54598 -10.28422 -10.13676 -9.86407 -9.85375 -9.51874 -9.13338 -9.06610 -8.89819 -8.46891 -6.98984 -5.80913 -3.09881 0.96142 1.09833 2.51988 2.98604 3.08406 3.40526 3.42885 3.46096 3.48473 4.19246 4.24254 4.39349 4.48126 4.55926 4.70456 4.76975 4.85607 4.89861 4.92822 4.95515 4.98381 5.04391 5.12205 5.18356 5.20094 5.35045 5.43043 5.43976 5.47136 5.49288 5.64987 5.78408 5.79308 5.81959 5.86955 5.90420 5.96885 6.06134 6.13380 6.19344 6.22802 6.28281 6.32479 6.41782 6.45261 6.55776 6.79444 7.07878 7.14534 7.40860 7.67031 8.11973 8.37572 9.48738 10.06919 10.41014 11.41477 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001667 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.635101 B =16797.602813 C =17040.656571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.725 5.725 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.134 4.134 18 C -0.028 4.028 19 H 0.094 0.906 20 C -0.159 4.159 21 C 0.063 3.937 22 O -0.319 6.319 23 C 0.137 3.863 24 C -0.151 4.151 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.085 4.085 28 C -0.154 4.154 29 C -0.161 4.161 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.077 0.923 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.672 -28.279 12.086 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.376 5.376 15 C 0.296 3.704 16 O -0.420 6.420 17 C -0.174 4.174 18 C -0.046 4.046 19 H 0.112 0.888 20 C -0.196 4.196 21 C -0.012 4.012 22 O -0.233 6.233 23 C 0.091 3.909 24 C -0.170 4.170 25 C -0.107 4.107 26 C -0.172 4.172 27 C -0.103 4.103 28 C -0.155 4.155 29 C -0.202 4.202 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.855 -28.165 12.079 30.887 hybrid contribution 0.651 1.070 -0.110 1.257 sum 4.506 -27.095 11.969 29.962 Atomic orbital electron populations 1.69668 1.05142 1.25660 1.57493 1.24778 0.95532 0.97819 1.02830 0.86117 0.78780 0.84077 0.77206 1.20532 1.21827 1.21853 1.19350 0.91104 0.84237 1.42857 0.91032 1.42415 1.05770 0.99894 1.86960 1.21547 0.95306 0.85048 0.92739 1.23441 1.01024 0.97030 0.96703 1.22636 0.98372 0.94421 0.99218 1.21434 0.95423 0.92002 0.90284 1.46087 1.13863 1.36206 1.41430 1.20583 0.87386 0.80572 0.81842 1.90685 1.15795 1.69395 1.66117 1.21793 0.99142 0.98648 0.97821 1.19745 0.94983 0.94135 0.95767 0.88761 1.22387 0.99619 0.98409 0.99174 1.23011 0.91016 0.95795 0.91391 1.85985 1.31229 1.69416 1.36620 1.18721 0.87376 0.92633 0.92144 1.20615 0.97479 0.98104 1.00809 1.20934 0.95114 0.98679 0.95960 1.21028 1.01060 1.00312 0.94798 1.20959 0.94023 0.95726 0.99630 1.19827 0.98596 1.02010 0.95099 1.23970 1.01301 0.94988 0.99956 0.93482 0.78072 0.90694 0.92011 0.90128 0.89429 0.91821 0.91251 0.76575 0.88649 0.88346 0.90718 0.88029 0.87325 0.91637 0.85326 0.85517 0.85885 0.85689 0.90399 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.71 -17.59 5.41 -52.55 -0.28 -17.87 16 10 C 0.17 3.14 4.48 -67.03 -0.30 2.84 16 11 C -0.14 -2.20 7.40 -25.92 -0.19 -2.39 16 12 C -0.13 -1.62 3.75 -89.81 -0.34 -1.95 16 13 C 0.13 1.63 5.50 -4.04 -0.02 1.61 16 14 N -0.72 -7.38 5.56 -60.29 -0.33 -7.71 16 15 C 0.51 5.58 7.51 -10.99 -0.08 5.50 16 16 O -0.54 -7.87 14.31 5.55 0.08 -7.79 16 17 C -0.13 -1.05 4.85 -27.89 -0.14 -1.19 16 18 C -0.03 -0.25 2.02 -91.70 -0.18 -0.43 16 19 H 0.09 0.94 7.82 -51.93 -0.41 0.53 16 20 C -0.16 -1.47 5.09 -26.48 -0.13 -1.61 16 21 C 0.06 0.53 7.03 37.37 0.26 0.80 16 22 O -0.32 -3.29 10.27 -19.27 -0.20 -3.49 16 23 C 0.14 1.36 6.47 -39.19 -0.25 1.11 16 24 C -0.15 -1.31 9.94 -39.34 -0.39 -1.70 16 25 C -0.09 -0.63 10.04 -39.66 -0.40 -1.03 16 26 C -0.15 -1.08 10.04 -39.61 -0.40 -1.48 16 27 C -0.09 -0.65 9.08 -39.53 -0.36 -1.01 16 28 C -0.15 -1.40 5.43 -104.44 -0.57 -1.96 16 29 C -0.16 -2.57 7.45 -25.83 -0.19 -2.76 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 10.15 7.93 -40.82 -0.32 9.83 16 32 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 38 H 0.40 3.10 8.47 -40.82 -0.35 2.75 16 39 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.10 0.58 6.24 -51.93 -0.32 0.25 16 41 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 42 H 0.10 1.08 6.58 -51.93 -0.34 0.74 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 48 H 0.13 0.72 6.37 -52.49 -0.33 0.39 16 49 H 0.08 1.39 7.92 -51.92 -0.41 0.98 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -32.73 401.70 -10.84 -43.57 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.93 Total: 10.38 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -3.93 Total: -13.01 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.11 Total: -52.88 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.12 Total: -11.28 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.73 -10.84 -43.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100564702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.530 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds