Wall clock time and date at job start Wed Apr 1 2020 02:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99578 * 2 1 4 4 H 1.48499 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47298 * 299.99635 * 3 2 1 6 6 H 1.48504 * 109.47064 * 60.00241 * 3 2 1 7 7 C 1.38812 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99689 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99881 * 180.02562 * 9 7 2 11 11 C 1.53775 * 113.61468 * 204.99927 * 10 9 7 12 12 C 1.53784 * 87.08286 * 219.93199 * 11 10 9 13 13 C 1.52999 * 113.61551 * 139.97879 * 12 11 10 14 14 N 1.46506 * 109.46775 * 176.53104 * 13 12 11 15 15 C 1.34775 * 119.99653 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00155 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99857 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47597 * 173.90144 * 17 15 14 19 19 H 1.09005 * 109.43504 * 53.90991 * 18 17 15 20 20 C 1.53081 * 109.43808 * 293.99309 * 18 17 15 21 21 C 1.53408 * 108.27808 * 191.71297 * 20 18 17 22 22 O 1.42823 * 108.38748 * 64.74007 * 21 20 18 23 23 C 1.35852 * 117.87834 * 310.92802 * 22 21 20 24 24 C 1.39148 * 118.50315 * 196.93761 * 23 22 21 25 25 C 1.37965 * 120.21395 * 180.22920 * 24 23 22 26 26 C 1.38292 * 119.96065 * 359.97438 * 25 24 23 27 27 C 1.38098 * 119.98478 * 359.91501 * 26 25 24 28 28 C 1.38371 * 121.80571 * 17.00729 * 23 22 21 29 29 C 1.53777 * 87.16911 * 25.38580 * 12 11 10 30 30 H 0.96996 * 120.00477 * 0.02562 * 1 2 3 31 31 H 0.96996 * 120.00201 * 359.97438 * 9 7 2 32 32 H 1.09006 * 112.84564 * 336.18924 * 10 9 7 33 33 H 1.09004 * 113.62057 * 105.38196 * 11 10 9 34 34 H 1.08997 * 113.68983 * 334.48839 * 11 10 9 35 35 H 1.08999 * 113.60984 * 270.79823 * 12 11 10 36 36 H 1.09000 * 109.47240 * 56.53130 * 13 12 11 37 37 H 1.08997 * 109.47041 * 296.52860 * 13 12 11 38 38 H 0.96998 * 120.00276 * 359.97438 * 14 13 12 39 39 H 1.09003 * 109.47398 * 53.90101 * 17 15 14 40 40 H 1.08999 * 109.47555 * 293.90304 * 17 15 14 41 41 H 1.08998 * 109.70040 * 311.40930 * 20 18 17 42 42 H 1.09004 * 109.69914 * 71.97688 * 20 18 17 43 43 H 1.08995 * 109.68146 * 184.46145 * 21 20 18 44 44 H 1.08997 * 109.68235 * 305.01314 * 21 20 18 45 45 H 1.07995 * 119.89072 * 0.20282 * 24 23 22 46 46 H 1.08002 * 120.01770 * 179.97438 * 25 24 23 47 47 H 1.08005 * 120.00499 * 179.97438 * 26 25 24 48 48 H 1.07995 * 119.84675 * 180.02562 * 27 26 25 49 49 H 1.09007 * 113.61556 * 89.16511 * 29 12 11 50 50 H 1.09005 * 113.61742 * 220.06205 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.2607 -4.8290 -0.5939 12 6 1.8495 -5.6979 0.5301 13 6 0.8472 -6.6862 1.1297 14 7 1.5213 -7.5198 2.1283 15 6 0.8306 -8.4685 2.7911 16 8 -0.3490 -8.6318 2.5612 17 6 1.5240 -9.3263 3.8179 18 6 0.4936 -10.2093 4.5247 19 1 -0.0756 -10.7682 3.7818 20 6 -0.4579 -9.3295 5.3394 21 6 -1.2831 -10.2375 6.2602 22 8 -0.3977 -10.8553 7.1952 23 6 0.7265 -11.4449 6.7113 24 6 1.4078 -12.3442 7.5257 25 6 2.5560 -12.9598 7.0717 26 6 3.0323 -12.6835 5.8031 27 6 2.3575 -11.7932 4.9912 28 6 1.2040 -11.1726 5.4414 29 6 2.0022 -4.4037 1.3466 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.0660 -3.5639 -0.4031 33 1 1.5920 -5.1209 -1.5905 34 1 0.1802 -4.7023 -0.5272 35 1 2.7995 -6.1642 0.2693 36 1 0.4447 -7.3199 0.3394 37 1 0.0344 -6.1365 1.6042 38 1 2.4648 -7.3894 2.3119 39 1 2.0189 -8.6882 4.5501 40 1 2.2648 -9.9558 3.3250 41 1 0.1169 -8.6234 5.9387 42 1 -1.1219 -8.7858 4.6673 43 1 -2.0241 -9.6428 6.7943 44 1 -1.7840 -11.0032 5.6679 45 1 1.0368 -12.5607 8.5165 46 1 3.0825 -13.6570 7.7066 47 1 3.9314 -13.1646 5.4471 48 1 2.7312 -11.5794 4.0008 49 1 1.1250 -4.1593 1.9457 50 1 2.9313 -4.3527 1.9144 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100564702.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:16 Heat of formation + Delta-G solvation = -51.233810 kcal Electronic energy + Delta-G solvation = -28941.152750 eV Core-core repulsion = 24932.821695 eV Total energy + Delta-G solvation = -4008.331055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.90215 -40.76333 -39.76807 -38.40833 -36.37901 -35.84757 -34.97877 -32.26057 -31.65303 -31.19560 -30.49975 -28.32643 -26.45622 -25.94193 -25.18143 -24.53628 -23.19365 -22.37471 -21.47046 -20.77231 -20.39598 -19.06714 -18.85817 -18.17624 -17.53194 -17.16237 -16.85621 -16.68207 -16.48130 -16.12932 -15.82006 -15.53891 -15.26642 -15.10945 -14.95013 -14.80691 -14.41187 -14.21662 -14.14719 -13.84850 -13.50353 -13.39380 -13.23653 -13.06824 -12.92153 -12.75416 -12.66077 -12.49633 -12.26902 -12.15891 -12.06172 -11.92837 -11.67181 -11.57949 -11.54209 -11.28425 -11.08195 -10.85831 -10.73092 -10.02228 -9.72375 -9.09805 -8.97843 -7.95140 -5.23403 0.38227 0.50254 1.47126 1.47703 1.57769 1.66892 2.22009 2.36591 2.56308 2.83855 3.36907 3.50314 3.60094 3.70270 3.74761 3.76974 3.85729 3.91268 4.06897 4.18385 4.26147 4.27165 4.29518 4.33214 4.36670 4.43962 4.46118 4.53566 4.57406 4.62116 4.70931 4.79039 4.81907 4.84832 4.98176 4.99416 5.04916 5.07658 5.11516 5.16471 5.23472 5.38574 5.39891 5.46865 5.54361 5.55616 5.63704 5.74273 5.91219 6.27388 6.49236 6.61032 7.30138 7.32751 8.11430 8.32795 9.28571 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001667 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.635101 B =16797.602813 C =17040.656571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.730 5.730 10 C 0.142 3.858 11 C -0.137 4.137 12 C -0.094 4.094 13 C 0.139 3.861 14 N -0.715 5.715 15 C 0.508 3.492 16 O -0.582 6.582 17 C -0.124 4.124 18 C -0.025 4.025 19 H 0.080 0.920 20 C -0.155 4.155 21 C 0.061 3.939 22 O -0.334 6.334 23 C 0.109 3.891 24 C -0.166 4.166 25 C -0.089 4.089 26 C -0.154 4.154 27 C -0.089 4.089 28 C -0.164 4.164 29 C -0.153 4.153 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.416 0.584 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.149 0.851 48 H 0.146 0.854 49 H 0.053 0.947 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 -30.214 12.205 33.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.373 4.373 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.177 4.177 12 C -0.113 4.113 13 C 0.015 3.985 14 N -0.367 5.367 15 C 0.296 3.704 16 O -0.463 6.463 17 C -0.163 4.163 18 C -0.044 4.044 19 H 0.099 0.901 20 C -0.193 4.193 21 C -0.013 4.013 22 O -0.249 6.249 23 C 0.064 3.936 24 C -0.185 4.185 25 C -0.107 4.107 26 C -0.172 4.172 27 C -0.107 4.107 28 C -0.165 4.165 29 C -0.194 4.194 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.253 0.747 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.151 0.849 46 H 0.169 0.831 47 H 0.166 0.834 48 H 0.164 0.836 49 H 0.072 0.928 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.104 -30.152 12.207 33.296 hybrid contribution -0.299 1.552 -0.134 1.586 sum 6.805 -28.600 12.072 31.781 Atomic orbital electron populations 1.69830 1.06728 1.25915 1.59864 1.25605 0.96376 1.01271 1.04030 0.85072 0.78386 0.79827 0.76486 1.18703 1.22200 1.22354 1.19782 0.91641 0.85369 1.40474 0.90205 1.42644 1.05347 1.01281 1.87489 1.22008 0.95630 0.83836 0.95286 1.23323 0.99840 0.95986 0.98553 1.22461 0.99492 0.92967 0.96369 1.21177 0.94806 0.91942 0.90621 1.45948 1.14560 1.35502 1.40709 1.21129 0.86938 0.80482 0.81868 1.90679 1.17718 1.70515 1.67365 1.21785 0.98948 0.98447 0.97150 1.19668 0.95099 0.94148 0.95439 0.90141 1.22306 0.99571 0.98454 0.98932 1.23086 0.91016 0.95817 0.91425 1.85955 1.31776 1.69825 1.37310 1.19051 0.87726 0.93707 0.93119 1.20854 0.98193 0.98307 1.01115 1.21279 0.94468 0.98441 0.96501 1.21394 1.01595 0.99707 0.94495 1.21245 0.93383 0.95442 1.00638 1.19870 0.99330 1.02489 0.94797 1.23736 1.00983 0.96181 0.98458 0.94147 0.79709 0.90105 0.90333 0.91661 0.85953 0.91757 0.93848 0.74713 0.87293 0.85507 0.91076 0.89752 0.86048 0.91577 0.84919 0.83112 0.83370 0.83616 0.92804 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.05 16 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.73 -36.49 5.41 -320.18 -1.73 -38.22 16 10 C 0.14 5.23 4.48 45.57 0.20 5.43 16 11 C -0.14 -4.07 7.40 31.12 0.23 -3.84 16 12 C -0.09 -2.14 3.75 -10.27 -0.04 -2.18 16 13 C 0.14 3.23 5.50 86.38 0.47 3.70 16 14 N -0.72 -12.90 5.56 -463.06 -2.57 -15.47 16 15 C 0.51 10.42 7.51 87.66 0.66 11.08 16 16 O -0.58 -16.94 14.31 -3.04 -0.04 -16.98 16 17 C -0.12 -1.67 4.85 29.85 0.14 -1.53 16 18 C -0.02 -0.43 2.02 -11.49 -0.02 -0.45 16 19 H 0.08 1.60 7.82 -2.38 -0.02 1.58 16 20 C -0.16 -2.95 5.09 30.76 0.16 -2.79 16 21 C 0.06 1.08 7.03 72.12 0.51 1.58 16 22 O -0.33 -7.04 10.27 -91.88 -0.94 -7.99 16 23 C 0.11 2.12 6.47 22.52 0.15 2.27 16 24 C -0.17 -2.71 9.94 22.42 0.22 -2.49 16 25 C -0.09 -1.07 10.04 22.22 0.22 -0.84 16 26 C -0.15 -1.69 10.04 22.25 0.22 -1.46 16 27 C -0.09 -1.12 9.08 22.30 0.20 -0.92 16 28 C -0.16 -2.77 5.43 -19.75 -0.11 -2.88 16 29 C -0.15 -4.67 7.45 31.18 0.23 -4.44 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.37 20.25 7.93 -92.71 -0.73 19.52 16 32 H 0.08 2.88 8.10 -2.38 -0.02 2.86 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.26 7.87 -2.39 -0.02 1.24 16 38 H 0.42 4.91 8.47 -92.71 -0.79 4.13 16 39 H 0.11 1.23 8.09 -2.39 -0.02 1.22 16 40 H 0.13 1.00 6.24 -2.39 -0.01 0.99 16 41 H 0.07 1.36 8.06 -2.39 -0.02 1.35 16 42 H 0.08 1.90 6.58 -2.38 -0.02 1.88 16 43 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 47 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 48 H 0.15 1.13 6.37 -2.91 -0.02 1.11 16 49 H 0.05 1.92 7.92 -2.38 -0.02 1.90 16 50 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -73.25 401.70 1.22 -72.03 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.56 Total: 34.74 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.76 Total: -16.35 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.02 Total: -113.51 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.99 Total: -24.97 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -73.25 1.22 -72.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100564702.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.800 kcal (2) G-P(sol) polarization free energy of solvation -73.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds