Wall clock time and date at job start Wed Apr 1 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48499 * 109.47472 * 274.00609 * 3 2 1 5 5 H 1.48495 * 109.47141 * 34.01190 * 3 2 1 6 6 H 1.48505 * 109.46786 * 154.01139 * 3 2 1 7 7 C 1.38805 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99774 * 354.05846 * 7 2 1 9 9 N 1.36938 * 120.00377 * 174.05878 * 7 2 1 10 10 C 1.46492 * 120.00226 * 184.77181 * 9 7 2 11 11 C 1.53002 * 109.47327 * 175.03370 * 10 9 7 12 12 C 1.50709 * 112.84689 * 293.98383 * 11 10 9 13 13 C 1.38229 * 119.99971 * 113.49067 * 12 11 10 14 14 C 1.38231 * 120.00167 * 179.74094 * 13 12 11 15 15 C 1.38243 * 119.99677 * 0.52797 * 14 13 12 16 16 C 1.38234 * 119.99799 * 359.74655 * 15 14 13 17 17 C 1.38229 * 119.99882 * 293.75923 * 12 11 10 18 18 C 1.53783 * 113.61537 * 65.17555 * 11 10 9 19 19 C 1.53780 * 87.08001 * 89.11789 * 18 11 10 20 20 H 1.08996 * 113.61629 * 270.88691 * 19 18 11 21 21 N 1.46501 * 113.61357 * 140.06388 * 19 18 11 22 22 C 1.34777 * 119.99475 * 154.99942 * 21 19 18 23 23 O 1.21273 * 120.00361 * 0.02562 * 22 21 19 24 24 C 1.50701 * 119.99422 * 180.02562 * 22 21 19 25 25 H 1.09007 * 109.87563 * 303.99581 * 24 22 21 26 26 C 1.54099 * 109.87800 * 65.00516 * 24 22 21 27 27 C 1.54811 * 104.18995 * 121.45679 * 26 24 22 28 28 C 1.54987 * 102.09241 * 20.87552 * 27 26 24 29 29 O 1.43747 * 109.87660 * 182.83193 * 24 22 21 30 30 C 1.53777 * 113.61799 * 162.67807 * 11 10 9 31 31 H 0.96998 * 120.00248 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99497 * 4.78085 * 9 7 2 33 33 H 1.08996 * 109.47566 * 295.03837 * 10 9 7 34 34 H 1.09000 * 109.47016 * 55.03852 * 10 9 7 35 35 H 1.08005 * 119.99903 * 359.97438 * 13 12 11 36 36 H 1.08002 * 120.00319 * 180.29056 * 14 13 12 37 37 H 1.07999 * 119.99653 * 179.76636 * 15 14 13 38 38 H 1.08001 * 119.99834 * 179.97438 * 16 15 14 39 39 H 1.08002 * 120.00209 * 0.02562 * 17 12 11 40 40 H 1.08996 * 113.61710 * 203.66907 * 18 11 10 41 41 H 1.09005 * 113.61013 * 334.48862 * 18 11 10 42 42 H 0.96996 * 120.00231 * 335.00639 * 21 19 18 43 43 H 1.09010 * 110.48543 * 240.12540 * 26 24 22 44 44 H 1.08998 * 110.49278 * 2.63722 * 26 24 22 45 45 H 1.08995 * 110.91392 * 139.07822 * 27 26 24 46 46 H 1.09008 * 110.90309 * 262.64251 * 27 26 24 47 47 H 1.08996 * 110.62033 * 81.48279 * 28 27 26 48 48 H 1.09008 * 110.61741 * 204.32447 * 28 27 26 49 49 H 1.08995 * 113.61682 * 25.42761 * 30 11 10 50 50 H 1.08993 * 113.61587 * 156.33875 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4129 2.0955 -1.3966 5 1 1.4925 2.6267 0.7831 6 1 3.5875 1.4173 0.6135 7 6 2.0103 -1.2020 -0.0005 8 1 1.4747 -2.1349 0.0959 9 7 3.3742 -1.2052 -0.1233 10 6 4.0972 -2.4748 -0.2290 11 6 5.5810 -2.1976 -0.4790 12 6 5.8383 -1.5507 -1.8157 13 6 6.3162 -0.2550 -1.8759 14 6 6.5573 0.3365 -3.1018 15 6 6.3101 -0.3639 -4.2677 16 6 5.8268 -1.6576 -4.2075 17 6 5.5911 -2.2511 -2.9815 18 6 6.2814 -1.4898 0.6929 19 6 6.5829 -2.8890 1.2550 20 1 5.7998 -3.2757 1.9071 21 7 7.9210 -3.0112 1.8386 22 6 8.1617 -3.9416 2.7835 23 8 7.2706 -4.6780 3.1503 24 6 9.5380 -4.0669 3.3843 25 1 10.2735 -4.2268 2.5958 26 6 9.8842 -2.7885 4.1722 27 6 10.1584 -3.2917 5.6103 28 6 10.4731 -4.7909 5.3753 29 8 9.5677 -5.1629 4.3140 30 6 6.4902 -3.4039 -0.1912 31 1 -0.4850 0.8400 -0.0004 32 1 3.8615 -0.3667 -0.1401 33 1 3.9837 -3.0360 0.6984 34 1 3.6917 -3.0560 -1.0573 35 1 6.5047 0.2939 -0.9650 36 1 6.9351 1.3472 -3.1488 37 1 6.4949 0.0996 -5.2255 38 1 5.6334 -2.2047 -5.1184 39 1 5.2133 -3.2617 -2.9345 40 1 7.1729 -0.9360 0.3986 41 1 5.6055 -0.9038 1.3158 42 1 8.6338 -2.4224 1.5451 43 1 10.7739 -2.3142 3.7579 44 1 9.0435 -2.0948 4.1622 45 1 11.0155 -2.7779 6.0455 46 1 9.2758 -3.1727 6.2389 47 1 11.5083 -4.9210 5.0599 48 1 10.2716 -5.3712 6.2759 49 1 5.9828 -4.3644 -0.2810 50 1 7.4388 -3.3734 -0.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105402790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:17 Heat of formation + Delta-G solvation = -17.724321 kcal Electronic energy + Delta-G solvation = -30359.317371 eV Core-core repulsion = 26352.439396 eV Total energy + Delta-G solvation = -4006.877975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.88704 -40.12950 -38.58127 -37.63681 -34.72869 -33.58890 -32.43953 -31.21622 -30.74959 -30.71329 -29.75239 -26.81868 -25.82428 -24.50868 -23.44257 -22.24035 -22.14184 -21.80523 -21.28838 -20.55285 -18.77304 -17.73652 -17.48858 -17.07117 -16.79933 -16.33280 -15.63675 -15.29741 -14.94388 -14.66638 -14.60886 -14.39894 -14.36419 -14.06468 -13.81432 -13.43217 -13.28260 -13.18575 -12.98437 -12.46292 -12.35246 -12.29720 -12.19907 -12.09466 -11.96284 -11.68637 -11.44465 -11.31019 -11.27528 -11.05727 -10.89426 -10.61749 -10.39770 -10.28218 -10.27278 -10.01516 -9.59779 -9.57644 -9.08074 -8.84865 -8.69940 -8.42670 -7.18656 -5.74396 -3.08555 1.58766 1.61716 2.46328 2.75848 3.37772 3.40638 3.45929 3.66780 3.98522 4.06648 4.35419 4.39941 4.51418 4.54299 4.60526 4.61780 4.76029 4.79157 4.85928 4.97641 5.13699 5.15884 5.18046 5.20639 5.26497 5.31596 5.34356 5.47011 5.54079 5.61494 5.63358 5.67742 5.73621 5.74914 5.81707 5.90095 5.98106 6.10940 6.16024 6.24371 6.27430 6.36381 6.55500 6.57403 6.61856 6.70203 6.77051 6.87923 7.21609 7.37967 8.03533 8.11906 8.44952 9.24736 9.97003 10.17609 11.44120 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010392 B = 0.003055 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.778243 B = 9162.403077 C =10570.731254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.183 3.817 11 C -0.049 4.049 12 C -0.042 4.042 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.139 4.139 19 C 0.126 3.874 20 H 0.121 0.879 21 N -0.717 5.717 22 C 0.511 3.489 23 O -0.516 6.516 24 C 0.060 3.940 25 H 0.094 0.906 26 C -0.148 4.148 27 C -0.154 4.154 28 C 0.044 3.956 29 O -0.347 6.347 30 C -0.131 4.131 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.857 -3.823 2.105 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.056 3.944 11 C -0.051 4.051 12 C -0.043 4.043 13 C -0.137 4.137 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.137 4.137 17 C -0.125 4.125 18 C -0.177 4.177 19 C 0.022 3.978 20 H 0.139 0.861 21 N -0.369 5.369 22 C 0.296 3.704 23 O -0.390 6.390 24 C -0.002 4.002 25 H 0.111 0.889 26 C -0.186 4.186 27 C -0.192 4.192 28 C -0.033 4.033 29 O -0.265 6.265 30 C -0.171 4.171 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.115 0.885 49 H 0.096 0.904 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.831 -4.670 2.393 26.358 hybrid contribution 0.921 1.892 -0.258 2.119 sum 26.751 -2.779 2.134 26.980 Atomic orbital electron populations 1.69716 1.05097 1.25706 1.57590 1.24632 0.95137 0.97095 1.02114 0.86573 0.79271 0.85355 0.77758 1.21112 1.21789 1.20349 1.19035 0.81022 0.94854 1.42134 0.89221 1.42584 1.04626 1.02121 1.90145 1.20440 0.85772 0.89580 0.98631 1.20908 0.96760 0.96121 0.91262 1.19488 0.96877 0.93900 0.93991 1.21035 1.00192 0.94771 0.97712 1.21063 1.00679 0.99482 0.92667 1.21048 1.00790 0.95042 0.97991 1.21075 0.99627 0.95422 0.97558 1.20935 0.99437 1.00227 0.91860 1.23486 1.00699 0.96162 0.97370 1.22574 0.84448 0.97146 0.93628 0.86113 1.45942 1.13096 1.36938 1.40909 1.20461 0.89929 0.80629 0.79428 1.90747 1.45944 1.42172 1.60091 1.22650 0.95124 0.88388 0.94036 0.88868 1.22961 1.03270 0.96878 0.95535 1.23145 1.03056 0.96254 0.96745 1.23641 0.93628 0.94874 0.91160 1.89031 1.65394 1.37030 1.35018 1.23472 0.99577 0.98220 0.95797 0.93135 0.80576 0.95160 0.94579 0.86309 0.86563 0.86647 0.86432 0.86177 0.89620 0.89578 0.76767 0.89525 0.89676 0.89732 0.90045 0.91857 0.88462 0.90435 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.71 13.97 55.49 0.78 -28.94 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.38 27.76 -169.99 -4.72 17.66 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.28 -6.54 6.50 56.52 0.37 -6.17 16 7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.67 5.03 -59.92 -0.30 -17.97 16 10 C 0.18 3.51 5.43 -4.05 -0.02 3.48 16 11 C -0.05 -0.73 0.63 -154.84 -0.10 -0.82 16 12 C -0.04 -0.63 4.67 -104.62 -0.49 -1.12 16 13 C -0.12 -1.71 9.05 -39.59 -0.36 -2.07 16 14 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 15 C -0.13 -1.69 10.05 -39.58 -0.40 -2.08 16 16 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 17 C -0.11 -1.54 9.33 -39.59 -0.37 -1.91 16 18 C -0.14 -1.81 5.82 -25.92 -0.15 -1.96 16 19 C 0.13 1.61 3.89 -67.11 -0.26 1.35 16 20 H 0.12 1.89 6.93 -51.93 -0.36 1.53 16 21 N -0.72 -7.34 5.33 -53.02 -0.28 -7.62 16 22 C 0.51 6.44 6.95 -10.98 -0.08 6.36 16 23 O -0.52 -9.17 16.13 -14.01 -0.23 -9.40 16 24 C 0.06 0.55 3.84 -27.31 -0.10 0.45 16 25 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 26 C -0.15 -0.97 6.61 -25.20 -0.17 -1.14 16 27 C -0.15 -0.97 7.15 -24.73 -0.18 -1.15 16 28 C 0.04 0.32 7.72 38.21 0.29 0.61 16 29 O -0.35 -4.10 10.74 -54.81 -0.59 -4.69 16 30 C -0.13 -1.62 6.90 -25.92 -0.18 -1.80 16 31 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 32 H 0.36 8.35 5.14 -40.82 -0.21 8.14 16 33 H 0.03 0.60 7.31 -51.93 -0.38 0.22 16 34 H 0.04 0.72 7.96 -51.93 -0.41 0.31 16 35 H 0.12 1.58 6.45 -52.48 -0.34 1.24 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 40 H 0.09 0.90 6.81 -51.93 -0.35 0.55 16 41 H 0.09 1.31 7.75 -51.93 -0.40 0.91 16 42 H 0.40 2.76 8.73 -40.82 -0.36 2.41 16 43 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.08 0.62 7.69 -51.93 -0.40 0.22 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 49 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 50 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -36.46 402.19 -10.76 -47.22 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.87 Total: 10.41 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -3.60 Total: -12.74 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.19 Total: -54.53 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.81 Total: -14.08 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.72 Total: 17.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.46 -10.76 -47.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105402790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -36.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds