Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99558 * 2 1 4 4 H 1.48499 * 109.47472 * 274.00609 * 3 2 1 5 5 H 1.48495 * 109.47141 * 34.01190 * 3 2 1 6 6 H 1.48505 * 109.46786 * 154.01139 * 3 2 1 7 7 C 1.38805 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99774 * 354.05846 * 7 2 1 9 9 N 1.36938 * 120.00377 * 174.05878 * 7 2 1 10 10 C 1.46492 * 120.00226 * 184.77181 * 9 7 2 11 11 C 1.53002 * 109.47327 * 175.03370 * 10 9 7 12 12 C 1.50709 * 112.84689 * 293.98383 * 11 10 9 13 13 C 1.38229 * 119.99971 * 113.49067 * 12 11 10 14 14 C 1.38231 * 120.00167 * 179.74094 * 13 12 11 15 15 C 1.38243 * 119.99677 * 0.52797 * 14 13 12 16 16 C 1.38234 * 119.99799 * 359.74655 * 15 14 13 17 17 C 1.38229 * 119.99882 * 293.75923 * 12 11 10 18 18 C 1.53783 * 113.61537 * 65.17555 * 11 10 9 19 19 C 1.53780 * 87.08001 * 89.11789 * 18 11 10 20 20 H 1.08996 * 113.61629 * 270.88691 * 19 18 11 21 21 N 1.46501 * 113.61357 * 140.06388 * 19 18 11 22 22 C 1.34777 * 119.99475 * 154.99942 * 21 19 18 23 23 O 1.21273 * 120.00361 * 0.02562 * 22 21 19 24 24 C 1.50701 * 119.99422 * 180.02562 * 22 21 19 25 25 H 1.09007 * 109.87563 * 303.99581 * 24 22 21 26 26 C 1.54099 * 109.87800 * 65.00516 * 24 22 21 27 27 C 1.54811 * 104.18995 * 121.45679 * 26 24 22 28 28 C 1.54987 * 102.09241 * 20.87552 * 27 26 24 29 29 O 1.43747 * 109.87660 * 182.83193 * 24 22 21 30 30 C 1.53777 * 113.61799 * 162.67807 * 11 10 9 31 31 H 0.96998 * 120.00248 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99497 * 4.78085 * 9 7 2 33 33 H 1.08996 * 109.47566 * 295.03837 * 10 9 7 34 34 H 1.09000 * 109.47016 * 55.03852 * 10 9 7 35 35 H 1.08005 * 119.99903 * 359.97438 * 13 12 11 36 36 H 1.08002 * 120.00319 * 180.29056 * 14 13 12 37 37 H 1.07999 * 119.99653 * 179.76636 * 15 14 13 38 38 H 1.08001 * 119.99834 * 179.97438 * 16 15 14 39 39 H 1.08002 * 120.00209 * 0.02562 * 17 12 11 40 40 H 1.08996 * 113.61710 * 203.66907 * 18 11 10 41 41 H 1.09005 * 113.61013 * 334.48862 * 18 11 10 42 42 H 0.96996 * 120.00231 * 335.00639 * 21 19 18 43 43 H 1.09010 * 110.48543 * 240.12540 * 26 24 22 44 44 H 1.08998 * 110.49278 * 2.63722 * 26 24 22 45 45 H 1.08995 * 110.91392 * 139.07822 * 27 26 24 46 46 H 1.09008 * 110.90309 * 262.64251 * 27 26 24 47 47 H 1.08996 * 110.62033 * 81.48279 * 28 27 26 48 48 H 1.09008 * 110.61741 * 204.32447 * 28 27 26 49 49 H 1.08995 * 113.61682 * 25.42761 * 30 11 10 50 50 H 1.08993 * 113.61587 * 156.33875 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4129 2.0955 -1.3966 5 1 1.4925 2.6267 0.7831 6 1 3.5875 1.4173 0.6135 7 6 2.0103 -1.2020 -0.0005 8 1 1.4747 -2.1349 0.0959 9 7 3.3742 -1.2052 -0.1233 10 6 4.0972 -2.4748 -0.2290 11 6 5.5810 -2.1976 -0.4790 12 6 5.8383 -1.5507 -1.8157 13 6 6.3162 -0.2550 -1.8759 14 6 6.5573 0.3365 -3.1018 15 6 6.3101 -0.3639 -4.2677 16 6 5.8268 -1.6576 -4.2075 17 6 5.5911 -2.2511 -2.9815 18 6 6.2814 -1.4898 0.6929 19 6 6.5829 -2.8890 1.2550 20 1 5.7998 -3.2757 1.9071 21 7 7.9210 -3.0112 1.8386 22 6 8.1617 -3.9416 2.7835 23 8 7.2706 -4.6780 3.1503 24 6 9.5380 -4.0669 3.3843 25 1 10.2735 -4.2268 2.5958 26 6 9.8842 -2.7885 4.1722 27 6 10.1584 -3.2917 5.6103 28 6 10.4731 -4.7909 5.3753 29 8 9.5677 -5.1629 4.3140 30 6 6.4902 -3.4039 -0.1912 31 1 -0.4850 0.8400 -0.0004 32 1 3.8615 -0.3667 -0.1401 33 1 3.9837 -3.0360 0.6984 34 1 3.6917 -3.0560 -1.0573 35 1 6.5047 0.2939 -0.9650 36 1 6.9351 1.3472 -3.1488 37 1 6.4949 0.0996 -5.2255 38 1 5.6334 -2.2047 -5.1184 39 1 5.2133 -3.2617 -2.9345 40 1 7.1729 -0.9360 0.3986 41 1 5.6055 -0.9038 1.3158 42 1 8.6338 -2.4224 1.5451 43 1 10.7739 -2.3142 3.7579 44 1 9.0435 -2.0948 4.1622 45 1 11.0155 -2.7779 6.0455 46 1 9.2758 -3.1727 6.2389 47 1 11.5083 -4.9210 5.0599 48 1 10.2716 -5.3712 6.2759 49 1 5.9828 -4.3644 -0.2810 50 1 7.4388 -3.3734 -0.7271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105402790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = -41.828856 kcal Electronic energy + Delta-G solvation = -30360.362622 eV Core-core repulsion = 26352.439396 eV Total energy + Delta-G solvation = -4007.923226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.92324 -41.01744 -39.47466 -38.68670 -36.43498 -34.91924 -33.32894 -32.94524 -31.82956 -31.74036 -30.48041 -28.40866 -26.95236 -25.59740 -24.44179 -23.81872 -23.06781 -22.70508 -22.27871 -21.49116 -20.28928 -19.25863 -18.48576 -18.17404 -17.43973 -17.26966 -16.72600 -16.46011 -16.25128 -16.02080 -15.74261 -15.56292 -15.32162 -15.12969 -14.81025 -14.61281 -14.57848 -14.39085 -14.21624 -14.11132 -13.63918 -13.42556 -13.28671 -12.99459 -12.84867 -12.76940 -12.66004 -12.32414 -12.23251 -12.17884 -12.08072 -11.99377 -11.87245 -11.76464 -11.43800 -11.24256 -11.13448 -10.96569 -10.48741 -10.08445 -9.72604 -9.48697 -9.29082 -8.04252 -5.36548 0.55043 0.59185 1.33289 1.38561 1.45462 1.52124 1.92163 2.46890 2.94279 3.03264 3.24330 3.31491 3.43815 3.47154 3.67814 3.71562 3.77396 3.88890 3.99406 4.01854 4.05564 4.23328 4.25521 4.27178 4.35472 4.41360 4.48740 4.67449 4.71171 4.72450 4.74149 4.77904 4.78320 4.85276 4.90903 4.91888 4.99813 5.06503 5.10097 5.14060 5.16750 5.24408 5.27009 5.52908 5.67722 5.69801 5.74372 5.80243 5.81444 6.19301 6.21638 6.55126 7.07085 7.23202 7.82469 8.04657 9.17627 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010392 B = 0.003055 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.778243 B = 9162.403077 C =10570.731254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.234 4.234 8 H 0.052 0.948 9 N -0.746 5.746 10 C 0.181 3.819 11 C -0.048 4.048 12 C -0.057 4.057 13 C -0.131 4.131 14 C -0.126 4.126 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.126 4.126 19 C 0.128 3.872 20 H 0.084 0.916 21 N -0.696 5.696 22 C 0.505 3.495 23 O -0.580 6.580 24 C 0.060 3.940 25 H 0.126 0.874 26 C -0.143 4.143 27 C -0.153 4.153 28 C 0.037 3.963 29 O -0.391 6.391 30 C -0.116 4.116 31 H 0.258 0.742 32 H 0.368 0.632 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.131 0.869 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.064 0.936 42 H 0.420 0.580 43 H 0.125 0.875 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.066 0.934 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.480 -1.505 1.194 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.777 3.223 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.365 4.365 8 H 0.070 0.930 9 N -0.391 5.391 10 C 0.055 3.945 11 C -0.049 4.049 12 C -0.058 4.058 13 C -0.149 4.149 14 C -0.144 4.144 15 C -0.152 4.152 16 C -0.145 4.145 17 C -0.144 4.144 18 C -0.164 4.164 19 C 0.023 3.977 20 H 0.102 0.898 21 N -0.349 5.349 22 C 0.292 3.708 23 O -0.458 6.458 24 C -0.001 4.001 25 H 0.143 0.857 26 C -0.181 4.181 27 C -0.191 4.191 28 C -0.039 4.039 29 O -0.310 6.310 30 C -0.155 4.155 31 H 0.067 0.933 32 H 0.201 0.799 33 H 0.038 0.962 34 H 0.042 0.958 35 H 0.149 0.851 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.083 0.917 42 H 0.258 0.742 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.085 0.915 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 30.542 -2.346 1.468 30.667 hybrid contribution -0.567 1.040 -0.003 1.184 sum 29.974 -1.307 1.465 30.038 Atomic orbital electron populations 1.69906 1.07226 1.26671 1.59637 1.25489 0.96056 1.01269 1.02567 0.85442 0.79120 0.79706 0.78000 1.20540 1.22103 1.17024 1.19001 0.83217 0.93506 1.40730 0.93038 1.42484 1.02895 1.03927 1.89835 1.20494 0.88952 0.87586 0.97497 1.20656 0.93677 0.98032 0.92491 1.19505 0.98083 0.94585 0.93585 1.21258 1.00394 0.94437 0.98830 1.21420 1.00062 1.00594 0.92313 1.21423 0.99786 0.94768 0.99222 1.21372 0.99262 0.96044 0.97792 1.21106 1.00171 1.00538 0.92611 1.23457 1.01313 0.95854 0.95765 1.22237 0.84965 0.97194 0.93331 0.89787 1.45708 1.12609 1.36621 1.39958 1.21277 0.90899 0.79701 0.78953 1.90721 1.48194 1.44723 1.62209 1.22856 0.93037 0.89351 0.94828 0.85702 1.23025 1.04489 0.95299 0.95239 1.23165 1.03426 0.95856 0.96642 1.23886 0.94163 0.95541 0.90327 1.88990 1.66818 1.38632 1.36538 1.23409 0.99954 0.96789 0.95362 0.93349 0.79869 0.96216 0.95805 0.85131 0.84144 0.84150 0.84657 0.86447 0.86002 0.91717 0.74215 0.85707 0.90633 0.86828 0.91981 0.89336 0.88524 0.91481 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.69 13.97 21.65 0.30 -64.39 16 2 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.95 46.05 27.76 68.60 1.90 47.96 16 4 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.25 -10.52 6.50 99.48 0.65 -9.87 16 7 C -0.23 -13.79 10.47 84.03 0.88 -12.91 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 9 N -0.75 -35.53 5.03 -343.48 -1.73 -37.25 16 10 C 0.18 7.17 5.43 86.38 0.47 7.64 16 11 C -0.05 -1.36 0.63 -52.40 -0.03 -1.39 16 12 C -0.06 -1.61 4.67 -19.87 -0.09 -1.70 16 13 C -0.13 -3.34 9.05 22.27 0.20 -3.14 16 14 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 15 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 16 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 17 C -0.13 -3.50 9.33 22.27 0.21 -3.29 16 18 C -0.13 -3.04 5.82 31.12 0.18 -2.86 16 19 C 0.13 3.21 3.89 45.52 0.18 3.39 16 20 H 0.08 2.79 6.93 -2.39 -0.02 2.78 16 21 N -0.70 -13.08 5.33 -440.03 -2.35 -15.42 16 22 C 0.50 12.50 6.95 87.66 0.61 13.10 16 23 O -0.58 -21.62 16.13 15.71 0.25 -21.37 16 24 C 0.06 1.00 3.84 30.22 0.12 1.12 16 25 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 26 C -0.14 -1.42 6.61 31.58 0.21 -1.21 16 27 C -0.15 -1.59 7.15 31.89 0.23 -1.36 16 28 C 0.04 0.48 7.72 72.66 0.56 1.04 16 29 O -0.39 -9.02 10.74 -130.26 -1.40 -10.42 16 30 C -0.12 -2.77 6.90 31.12 0.21 -2.55 16 31 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 32 H 0.37 16.53 5.14 -92.71 -0.48 16.05 16 33 H 0.02 0.83 7.31 -2.39 -0.02 0.81 16 34 H 0.02 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.13 2.92 6.45 -2.91 -0.02 2.90 16 36 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.12 2.07 6.81 -2.39 -0.02 2.05 16 41 H 0.06 1.88 7.75 -2.38 -0.02 1.86 16 42 H 0.42 4.30 8.73 -92.71 -0.81 3.49 16 43 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.07 0.91 7.69 -2.39 -0.02 0.90 16 45 H 0.11 0.51 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 50 H 0.11 2.12 8.10 -2.39 -0.02 2.10 16 Total: -1.00 -84.73 402.19 1.66 -83.07 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.39 Total: 33.58 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 5.07 Total: -15.76 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -3.77 Total: -117.06 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.15 Total: -31.79 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.96 kcal Total: -84.73 1.66 -83.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105402790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.241 kcal (2) G-P(sol) polarization free energy of solvation -84.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds