Wall clock time and date at job start Wed Apr 1 2020 03:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48500 * 109.46903 * 266.85660 * 3 2 1 5 5 H 1.48496 * 109.47147 * 26.85820 * 3 2 1 6 6 H 1.48497 * 109.47047 * 146.85771 * 3 2 1 7 7 C 1.38823 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99380 * 359.70510 * 7 2 1 9 9 N 1.36931 * 120.00099 * 179.69906 * 7 2 1 10 10 C 1.46495 * 119.99984 * 172.01919 * 9 7 2 11 11 C 1.53002 * 109.47203 * 185.02379 * 10 9 7 12 12 C 1.50700 * 112.90595 * 293.91873 * 11 10 9 13 13 C 1.38234 * 120.00142 * 124.47750 * 12 11 10 14 14 C 1.38235 * 120.00409 * 179.78797 * 13 12 11 15 15 C 1.38234 * 119.99828 * 0.46709 * 14 13 12 16 16 C 1.38234 * 120.00007 * 359.76780 * 15 14 13 17 17 C 1.38238 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.53783 * 113.61656 * 65.16895 * 11 10 9 19 19 C 1.53784 * 87.08026 * 89.11827 * 18 11 10 20 20 H 1.08993 * 113.61560 * 270.80272 * 19 18 11 21 21 N 1.46500 * 113.61571 * 139.97950 * 19 18 11 22 22 C 1.34770 * 119.99835 * 154.99860 * 21 19 18 23 23 O 1.21281 * 120.00379 * 0.02562 * 22 21 19 24 24 C 1.50701 * 119.99609 * 179.72547 * 22 21 19 25 25 H 1.08999 * 110.33316 * 57.53549 * 24 22 21 26 26 C 1.54476 * 110.37521 * 295.27904 * 24 22 21 27 27 C 1.54513 * 104.06121 * 217.19140 * 26 24 22 28 28 C 1.54482 * 104.06502 * 0.02562 * 27 26 24 29 29 O 1.44425 * 104.80259 * 23.97707 * 28 27 26 30 30 C 1.53784 * 113.61664 * 162.66989 * 11 10 9 31 31 H 0.97007 * 119.99444 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99762 * 352.02882 * 9 7 2 33 33 H 1.08994 * 109.47268 * 65.02343 * 10 9 7 34 34 H 1.09005 * 109.47361 * 305.02182 * 10 9 7 35 35 H 1.08005 * 119.99644 * 0.02562 * 13 12 11 36 36 H 1.08000 * 120.00320 * 180.25078 * 14 13 12 37 37 H 1.07997 * 120.00192 * 179.78694 * 15 14 13 38 38 H 1.07999 * 120.00354 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.00577 * 179.97438 * 17 16 15 40 40 H 1.09001 * 113.61601 * 334.57175 * 18 11 10 41 41 H 1.08995 * 113.61543 * 203.66679 * 18 11 10 42 42 H 0.96996 * 119.99677 * 335.00720 * 21 19 18 43 43 H 1.09004 * 110.50900 * 335.83266 * 26 24 22 44 44 H 1.08998 * 110.51454 * 98.54821 * 26 24 22 45 45 H 1.09007 * 110.50839 * 118.64479 * 27 26 24 46 46 H 1.09004 * 110.51090 * 241.34937 * 27 26 24 47 47 H 1.08991 * 110.36762 * 142.81195 * 28 27 26 48 48 H 1.09001 * 110.36744 * 265.14987 * 28 27 26 49 49 H 1.09004 * 113.61173 * 156.33318 * 30 11 10 50 50 H 1.08994 * 113.61304 * 25.42981 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5642 2.0079 -1.3980 5 1 1.4161 2.6709 0.6325 6 1 3.5130 1.4601 0.7654 7 6 2.0102 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0058 9 7 3.3795 -1.2024 -0.0057 10 6 4.1127 -2.4583 0.1710 11 6 5.6125 -2.1665 0.2499 12 6 6.1743 -1.6293 -1.0411 13 6 6.8517 -0.4243 -1.0518 14 6 7.3709 0.0664 -2.2352 15 6 7.2043 -0.6432 -3.4098 16 6 6.5227 -1.8458 -3.4001 17 6 6.0072 -2.3386 -2.2159 18 6 6.0163 -1.3458 1.4862 19 6 6.1839 -2.6850 2.2232 20 1 5.2720 -3.0340 2.7076 21 7 7.3500 -2.7255 3.1091 22 6 7.3676 -3.5668 4.1617 23 8 6.4184 -4.2909 4.3754 24 6 8.5697 -3.6128 5.0694 25 1 8.7655 -2.6260 5.4890 26 6 9.8067 -4.1244 4.2984 27 6 10.5607 -4.9917 5.3312 28 6 9.6897 -4.9020 6.6040 29 8 8.3664 -4.5794 6.1236 30 6 6.4344 -3.3217 0.8459 31 1 -0.4850 0.8401 -0.0004 32 1 3.8640 -0.3709 -0.1269 33 1 3.9147 -3.1167 -0.6748 34 1 3.7878 -2.9423 1.0921 35 1 6.9787 0.1319 -0.1347 36 1 7.9036 1.0058 -2.2428 37 1 7.6069 -0.2582 -4.3350 38 1 6.3929 -2.4004 -4.3177 39 1 5.4744 -3.2779 -2.2082 40 1 5.2106 -0.7275 1.8820 41 1 6.9495 -0.7969 1.3602 42 1 8.1092 -2.1466 2.9381 43 1 9.5011 -4.7277 3.4435 44 1 10.4277 -3.2890 3.9751 45 1 10.6279 -6.0237 4.9868 46 1 11.5545 -4.5850 5.5185 47 1 9.6812 -5.8587 7.1260 48 1 10.0576 -4.1136 7.2606 49 1 7.4820 -3.3130 0.5448 50 1 5.9662 -4.2985 0.7247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105402791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:21 Heat of formation + Delta-G solvation = -16.707746 kcal Electronic energy + Delta-G solvation = -30350.284696 eV Core-core repulsion = 26343.450803 eV Total energy + Delta-G solvation = -4006.833893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.87925 -40.11600 -38.61645 -37.65761 -34.73269 -33.57693 -32.43688 -31.25244 -30.77244 -30.71119 -29.74108 -26.83248 -25.79818 -24.61893 -23.51650 -22.30202 -21.97169 -21.81203 -21.26449 -20.55954 -18.77162 -17.72753 -17.49024 -17.15905 -16.78134 -16.24705 -15.53185 -15.32499 -15.11146 -14.67882 -14.61662 -14.50425 -14.35489 -14.09288 -13.73711 -13.45526 -13.32651 -13.16443 -13.01720 -12.51301 -12.35084 -12.28819 -12.20636 -12.10811 -11.93052 -11.75289 -11.43451 -11.25511 -11.20931 -11.06800 -10.88655 -10.58992 -10.35266 -10.31893 -10.26997 -10.03300 -9.69678 -9.56536 -9.07985 -8.83289 -8.73594 -8.45382 -7.18154 -5.74240 -3.09621 1.54496 1.58434 2.46161 2.73969 3.38974 3.42282 3.46556 3.71126 3.94577 4.08416 4.29760 4.43382 4.53782 4.55313 4.61957 4.63104 4.72201 4.81436 4.85971 4.91223 5.09973 5.12636 5.14389 5.20270 5.24622 5.28082 5.35950 5.47235 5.55805 5.56676 5.62111 5.67772 5.70187 5.71758 5.81842 5.92237 5.97995 6.11080 6.14939 6.22617 6.29146 6.30941 6.53477 6.55568 6.60494 6.67947 6.76117 6.86331 7.18264 7.37782 8.04165 8.11543 8.45201 9.24777 9.96607 10.17518 11.44237 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003102 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.390318 B = 9025.098850 C =10741.782564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.182 3.818 11 C -0.050 4.050 12 C -0.046 4.046 13 C -0.123 4.123 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.104 4.104 18 C -0.140 4.140 19 C 0.126 3.874 20 H 0.122 0.878 21 N -0.715 5.715 22 C 0.516 3.484 23 O -0.515 6.515 24 C 0.056 3.944 25 H 0.095 0.905 26 C -0.145 4.145 27 C -0.154 4.154 28 C 0.041 3.959 29 O -0.344 6.344 30 C -0.130 4.130 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.029 0.971 34 H 0.038 0.962 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.398 0.602 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.471 -5.485 4.448 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.392 5.392 10 C 0.055 3.945 11 C -0.051 4.051 12 C -0.046 4.046 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.149 4.149 16 C -0.137 4.137 17 C -0.122 4.122 18 C -0.178 4.178 19 C 0.022 3.978 20 H 0.140 0.860 21 N -0.367 5.367 22 C 0.301 3.699 23 O -0.388 6.388 24 C -0.005 4.005 25 H 0.112 0.888 26 C -0.183 4.183 27 C -0.192 4.192 28 C -0.036 4.036 29 O -0.261 6.261 30 C -0.170 4.170 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.304 -6.208 4.745 27.440 hybrid contribution 1.082 1.772 -0.321 2.101 sum 27.386 -4.437 4.424 28.094 Atomic orbital electron populations 1.69702 1.05112 1.25774 1.57548 1.24681 0.95172 0.97102 1.01963 0.86621 0.79394 0.85178 0.77857 1.21103 1.21820 1.20160 1.19036 0.80542 0.94664 1.42920 0.89254 1.42521 1.03823 1.03895 1.89007 1.20466 0.85374 0.89773 0.98888 1.20898 0.96830 0.96536 0.90815 1.19519 0.96296 0.94434 0.94329 1.21098 0.98876 0.95911 0.98219 1.21059 1.00454 0.99580 0.92895 1.21056 1.00318 0.95650 0.97859 1.21095 0.98362 0.96383 0.97853 1.20980 0.98891 1.00297 0.91995 1.23519 1.02410 0.96471 0.95398 1.22598 0.89525 0.97377 0.88305 0.86027 1.45916 1.20685 1.41813 1.28322 1.20196 0.88112 0.80458 0.81140 1.90760 1.36064 1.40458 1.71560 1.22899 0.93507 0.94999 0.89136 0.88785 1.22926 0.95377 1.00677 0.99334 1.22950 0.99556 1.01356 0.95294 1.23506 0.82615 1.01549 0.95974 1.89316 1.26040 1.60187 1.50605 1.23469 1.00187 0.98357 0.94941 0.93095 0.80703 0.95278 0.94444 0.86108 0.86560 0.86646 0.86402 0.86037 0.89316 0.89581 0.76773 0.89947 0.89536 0.90268 0.90104 0.88567 0.91932 0.89747 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.40 27.57 -169.99 -4.69 17.71 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.28 -6.56 6.78 56.52 0.38 -6.17 16 7 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.75 -17.59 4.98 -59.91 -0.30 -17.89 16 10 C 0.18 3.47 5.35 -4.04 -0.02 3.44 16 11 C -0.05 -0.73 0.68 -154.84 -0.10 -0.83 16 12 C -0.05 -0.66 4.63 -104.62 -0.48 -1.15 16 13 C -0.12 -1.68 9.14 -39.58 -0.36 -2.04 16 14 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 15 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 16 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 17 C -0.10 -1.49 9.28 -39.58 -0.37 -1.85 16 18 C -0.14 -1.86 6.16 -25.92 -0.16 -2.02 16 19 C 0.13 1.63 3.89 -67.11 -0.26 1.37 16 20 H 0.12 1.94 6.94 -51.93 -0.36 1.58 16 21 N -0.72 -7.43 5.33 -53.02 -0.28 -7.71 16 22 C 0.52 6.60 7.08 -10.99 -0.08 6.52 16 23 O -0.51 -9.27 16.15 -13.67 -0.22 -9.49 16 24 C 0.06 0.53 3.71 -27.11 -0.10 0.43 16 25 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -0.93 6.61 -25.16 -0.17 -1.10 16 27 C -0.15 -0.86 7.09 -25.16 -0.18 -1.04 16 28 C 0.04 0.29 7.63 37.94 0.29 0.58 16 29 O -0.34 -4.14 10.91 -54.46 -0.59 -4.73 16 30 C -0.13 -1.59 7.01 -25.91 -0.18 -1.78 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 32 H 0.36 8.38 5.50 -40.82 -0.22 8.16 16 33 H 0.03 0.57 7.27 -51.93 -0.38 0.19 16 34 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 35 H 0.12 1.48 5.96 -52.48 -0.31 1.16 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.67 7.46 -52.49 -0.39 1.28 16 40 H 0.09 1.42 7.91 -51.93 -0.41 1.01 16 41 H 0.09 0.92 6.21 -51.93 -0.32 0.60 16 42 H 0.40 2.79 8.73 -40.82 -0.36 2.43 16 43 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 50 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -36.42 401.03 -10.65 -47.08 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.77 Total: 10.24 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.62 Total: -12.30 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.19 Total: -54.56 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.82 Total: -14.23 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.69 Total: 17.71 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.42 -10.65 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105402791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.370 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds