Wall clock time and date at job start Wed Apr 1 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48500 * 109.46903 * 266.85660 * 3 2 1 5 5 H 1.48496 * 109.47147 * 26.85820 * 3 2 1 6 6 H 1.48497 * 109.47047 * 146.85771 * 3 2 1 7 7 C 1.38823 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99380 * 359.70510 * 7 2 1 9 9 N 1.36931 * 120.00099 * 179.69906 * 7 2 1 10 10 C 1.46495 * 119.99984 * 172.01919 * 9 7 2 11 11 C 1.53002 * 109.47203 * 185.02379 * 10 9 7 12 12 C 1.50700 * 112.90595 * 293.91873 * 11 10 9 13 13 C 1.38234 * 120.00142 * 124.47750 * 12 11 10 14 14 C 1.38235 * 120.00409 * 179.78797 * 13 12 11 15 15 C 1.38234 * 119.99828 * 0.46709 * 14 13 12 16 16 C 1.38234 * 120.00007 * 359.76780 * 15 14 13 17 17 C 1.38238 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.53783 * 113.61656 * 65.16895 * 11 10 9 19 19 C 1.53784 * 87.08026 * 89.11827 * 18 11 10 20 20 H 1.08993 * 113.61560 * 270.80272 * 19 18 11 21 21 N 1.46500 * 113.61571 * 139.97950 * 19 18 11 22 22 C 1.34770 * 119.99835 * 154.99860 * 21 19 18 23 23 O 1.21281 * 120.00379 * 0.02562 * 22 21 19 24 24 C 1.50701 * 119.99609 * 179.72547 * 22 21 19 25 25 H 1.08999 * 110.33316 * 57.53549 * 24 22 21 26 26 C 1.54476 * 110.37521 * 295.27904 * 24 22 21 27 27 C 1.54513 * 104.06121 * 217.19140 * 26 24 22 28 28 C 1.54482 * 104.06502 * 0.02562 * 27 26 24 29 29 O 1.44425 * 104.80259 * 23.97707 * 28 27 26 30 30 C 1.53784 * 113.61664 * 162.66989 * 11 10 9 31 31 H 0.97007 * 119.99444 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99762 * 352.02882 * 9 7 2 33 33 H 1.08994 * 109.47268 * 65.02343 * 10 9 7 34 34 H 1.09005 * 109.47361 * 305.02182 * 10 9 7 35 35 H 1.08005 * 119.99644 * 0.02562 * 13 12 11 36 36 H 1.08000 * 120.00320 * 180.25078 * 14 13 12 37 37 H 1.07997 * 120.00192 * 179.78694 * 15 14 13 38 38 H 1.07999 * 120.00354 * 180.02562 * 16 15 14 39 39 H 1.07997 * 120.00577 * 179.97438 * 17 16 15 40 40 H 1.09001 * 113.61601 * 334.57175 * 18 11 10 41 41 H 1.08995 * 113.61543 * 203.66679 * 18 11 10 42 42 H 0.96996 * 119.99677 * 335.00720 * 21 19 18 43 43 H 1.09004 * 110.50900 * 335.83266 * 26 24 22 44 44 H 1.08998 * 110.51454 * 98.54821 * 26 24 22 45 45 H 1.09007 * 110.50839 * 118.64479 * 27 26 24 46 46 H 1.09004 * 110.51090 * 241.34937 * 27 26 24 47 47 H 1.08991 * 110.36762 * 142.81195 * 28 27 26 48 48 H 1.09001 * 110.36744 * 265.14987 * 28 27 26 49 49 H 1.09004 * 113.61173 * 156.33318 * 30 11 10 50 50 H 1.08994 * 113.61304 * 25.42981 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.5642 2.0079 -1.3980 5 1 1.4161 2.6709 0.6325 6 1 3.5130 1.4601 0.7654 7 6 2.0102 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0058 9 7 3.3795 -1.2024 -0.0057 10 6 4.1127 -2.4583 0.1710 11 6 5.6125 -2.1665 0.2499 12 6 6.1743 -1.6293 -1.0411 13 6 6.8517 -0.4243 -1.0518 14 6 7.3709 0.0664 -2.2352 15 6 7.2043 -0.6432 -3.4098 16 6 6.5227 -1.8458 -3.4001 17 6 6.0072 -2.3386 -2.2159 18 6 6.0163 -1.3458 1.4862 19 6 6.1839 -2.6850 2.2232 20 1 5.2720 -3.0340 2.7076 21 7 7.3500 -2.7255 3.1091 22 6 7.3676 -3.5668 4.1617 23 8 6.4184 -4.2909 4.3754 24 6 8.5697 -3.6128 5.0694 25 1 8.7655 -2.6260 5.4890 26 6 9.8067 -4.1244 4.2984 27 6 10.5607 -4.9917 5.3312 28 6 9.6897 -4.9020 6.6040 29 8 8.3664 -4.5794 6.1236 30 6 6.4344 -3.3217 0.8459 31 1 -0.4850 0.8401 -0.0004 32 1 3.8640 -0.3709 -0.1269 33 1 3.9147 -3.1167 -0.6748 34 1 3.7878 -2.9423 1.0921 35 1 6.9787 0.1319 -0.1347 36 1 7.9036 1.0058 -2.2428 37 1 7.6069 -0.2582 -4.3350 38 1 6.3929 -2.4004 -4.3177 39 1 5.4744 -3.2779 -2.2082 40 1 5.2106 -0.7275 1.8820 41 1 6.9495 -0.7969 1.3602 42 1 8.1092 -2.1466 2.9381 43 1 9.5011 -4.7277 3.4435 44 1 10.4277 -3.2890 3.9751 45 1 10.6279 -6.0237 4.9868 46 1 11.5545 -4.5850 5.5185 47 1 9.6812 -5.8587 7.1260 48 1 10.0576 -4.1136 7.2606 49 1 7.4820 -3.3130 0.5448 50 1 5.9662 -4.2985 0.7247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105402791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:20 Heat of formation + Delta-G solvation = -41.034450 kcal Electronic energy + Delta-G solvation = -30351.339581 eV Core-core repulsion = 26343.450803 eV Total energy + Delta-G solvation = -4007.888778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.92766 -40.99231 -39.49636 -38.69988 -36.44275 -34.91847 -33.32390 -32.94098 -31.83460 -31.72826 -30.45451 -28.41118 -26.92885 -25.66302 -24.52216 -23.88105 -23.06495 -22.49925 -22.25856 -21.50741 -20.27384 -19.25151 -18.47954 -18.26833 -17.46057 -17.14192 -16.68640 -16.39117 -16.24633 -16.13897 -15.65381 -15.60614 -15.49150 -15.13646 -14.78212 -14.66627 -14.55085 -14.34825 -14.22821 -14.09691 -13.61621 -13.42883 -13.25889 -13.00770 -12.85909 -12.72924 -12.69008 -12.30654 -12.25474 -12.23579 -12.17427 -11.93841 -11.74993 -11.66513 -11.45667 -11.23749 -11.03674 -10.95221 -10.63676 -10.09627 -9.72134 -9.47803 -9.28411 -8.04426 -5.37856 0.54706 0.59870 1.34273 1.38637 1.46146 1.50137 1.89285 2.46944 2.94137 3.07825 3.24665 3.34523 3.43397 3.47506 3.63410 3.74954 3.75625 3.93954 3.97921 4.03531 4.09430 4.22890 4.23654 4.26587 4.35295 4.37891 4.48627 4.66163 4.68906 4.71572 4.74931 4.79078 4.81609 4.86080 4.92400 4.93968 5.02752 5.07595 5.11800 5.14624 5.15858 5.24936 5.27290 5.52802 5.68256 5.70914 5.74582 5.76236 5.82405 6.19167 6.22007 6.53592 7.07010 7.21709 7.81984 8.04049 9.17447 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010405 B = 0.003102 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.390318 B = 9025.098850 C =10741.782564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.234 4.234 8 H 0.051 0.949 9 N -0.744 5.744 10 C 0.180 3.820 11 C -0.047 4.047 12 C -0.060 4.060 13 C -0.132 4.132 14 C -0.124 4.124 15 C -0.133 4.133 16 C -0.128 4.128 17 C -0.126 4.126 18 C -0.128 4.128 19 C 0.127 3.873 20 H 0.082 0.918 21 N -0.694 5.694 22 C 0.510 3.490 23 O -0.580 6.580 24 C 0.056 3.944 25 H 0.123 0.877 26 C -0.139 4.139 27 C -0.149 4.149 28 C 0.032 3.968 29 O -0.391 6.391 30 C -0.113 4.113 31 H 0.258 0.742 32 H 0.366 0.634 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.061 0.939 41 H 0.125 0.875 42 H 0.420 0.580 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.542 -3.209 3.934 32.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.253 4.253 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.365 4.365 8 H 0.069 0.931 9 N -0.389 5.389 10 C 0.054 3.946 11 C -0.048 4.048 12 C -0.061 4.061 13 C -0.149 4.149 14 C -0.142 4.142 15 C -0.151 4.151 16 C -0.146 4.146 17 C -0.144 4.144 18 C -0.166 4.166 19 C 0.022 3.978 20 H 0.100 0.900 21 N -0.347 5.347 22 C 0.297 3.703 23 O -0.458 6.458 24 C -0.005 4.005 25 H 0.141 0.859 26 C -0.177 4.177 27 C -0.186 4.186 28 C -0.044 4.044 29 O -0.310 6.310 30 C -0.152 4.152 31 H 0.067 0.933 32 H 0.199 0.801 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.143 0.857 42 H 0.259 0.741 43 H 0.087 0.913 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.128 0.872 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.131 0.869 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 31.472 -3.933 4.219 31.996 hybrid contribution -0.536 0.934 -0.197 1.095 sum 30.936 -2.999 4.022 31.341 Atomic orbital electron populations 1.69895 1.07237 1.26704 1.59656 1.25533 0.96084 1.01284 1.02446 0.85478 0.78942 0.79531 0.78378 1.20330 1.22238 1.17035 1.18998 0.82782 0.93296 1.41397 0.93082 1.42417 1.02081 1.05628 1.88785 1.20523 0.88664 0.87833 0.97618 1.20639 0.93581 0.98377 0.92222 1.19503 0.97445 0.95361 0.93748 1.21330 0.98747 0.95358 0.99493 1.21430 0.99891 1.00438 0.92393 1.21429 0.99493 0.95089 0.99096 1.21363 0.98196 0.97062 0.97951 1.21101 0.99811 1.00540 0.92918 1.23501 1.03161 0.96028 0.93925 1.22256 0.89262 0.97535 0.88777 0.89980 1.45672 1.20428 1.41435 1.27153 1.20994 0.88420 0.79421 0.81440 1.90733 1.38681 1.43180 1.73249 1.23092 0.92611 0.96154 0.88608 0.85917 1.22979 0.94309 1.01828 0.98595 1.22964 1.00416 1.01278 0.93971 1.23761 0.81188 1.02360 0.97124 1.89277 1.29046 1.61132 1.51579 1.23399 1.01182 0.96990 0.93671 0.93339 0.80054 0.95935 0.95989 0.84526 0.83858 0.84131 0.84882 0.86863 0.91990 0.85736 0.74142 0.91254 0.85879 0.90737 0.87231 0.88472 0.90026 0.86889 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.92 13.97 21.65 0.30 -64.62 16 2 C -0.06 -3.76 5.50 84.87 0.47 -3.30 16 3 Si 0.95 46.23 27.57 68.60 1.89 48.12 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.25 -10.67 6.78 99.48 0.67 -9.99 16 7 C -0.23 -13.81 10.47 84.04 0.88 -12.93 16 8 H 0.05 3.34 8.06 -2.91 -0.02 3.31 16 9 N -0.74 -35.49 4.98 -343.45 -1.71 -37.20 16 10 C 0.18 7.10 5.35 86.38 0.46 7.56 16 11 C -0.05 -1.34 0.68 -52.40 -0.04 -1.38 16 12 C -0.06 -1.63 4.63 -19.87 -0.09 -1.73 16 13 C -0.13 -3.08 9.14 22.27 0.20 -2.88 16 14 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 15 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 16 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 17 C -0.13 -3.46 9.28 22.27 0.21 -3.26 16 18 C -0.13 -3.18 6.16 31.12 0.19 -2.99 16 19 C 0.13 3.25 3.89 45.52 0.18 3.43 16 20 H 0.08 2.82 6.94 -2.39 -0.02 2.80 16 21 N -0.69 -13.25 5.33 -440.04 -2.35 -15.59 16 22 C 0.51 12.89 7.08 87.66 0.62 13.51 16 23 O -0.58 -22.03 16.15 15.36 0.25 -21.78 16 24 C 0.06 0.96 3.71 30.35 0.11 1.07 16 25 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 26 C -0.14 -1.35 6.61 31.61 0.21 -1.14 16 27 C -0.15 -1.23 7.09 31.61 0.22 -1.01 16 28 C 0.03 0.41 7.63 72.49 0.55 0.96 16 29 O -0.39 -9.30 10.91 -130.59 -1.42 -10.72 16 30 C -0.11 -2.67 7.01 31.12 0.22 -2.46 16 31 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 32 H 0.37 16.61 5.50 -92.71 -0.51 16.10 16 33 H 0.02 0.93 7.27 -2.39 -0.02 0.91 16 34 H 0.02 0.94 7.31 -2.38 -0.02 0.92 16 35 H 0.14 2.67 5.96 -2.91 -0.02 2.65 16 36 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.11 3.17 7.46 -2.91 -0.02 3.15 16 40 H 0.06 1.91 7.91 -2.39 -0.02 1.89 16 41 H 0.12 2.11 6.21 -2.39 -0.01 2.10 16 42 H 0.42 4.28 8.73 -92.71 -0.81 3.47 16 43 H 0.07 0.87 7.87 -2.38 -0.02 0.85 16 44 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.11 2.07 8.09 -2.38 -0.02 2.05 16 50 H 0.07 1.72 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -85.34 401.03 1.63 -83.71 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.39 Total: 32.37 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 5.07 Total: -14.29 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -3.76 Total: -117.41 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.18 Total: -32.51 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.89 Total: 48.12 kcal Total: -85.34 1.63 -83.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105402791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.674 kcal (2) G-P(sol) polarization free energy of solvation -85.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds