Wall clock time and date at job start Wed Apr 1 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47384 * 240.00450 * 3 2 1 5 5 H 1.48500 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00230 * 3 2 1 7 7 C 1.38806 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00579 * 359.97438 * 7 2 1 10 10 C 1.50244 * 130.83200 * 0.03193 * 9 7 2 11 11 H 1.08997 * 115.85839 * 359.62345 * 10 9 7 12 12 C 1.55844 * 101.04850 * 233.94722 * 10 9 7 13 13 C 1.54856 * 103.44565 * 327.06255 * 12 10 9 14 14 C 1.50230 * 130.84393 * 180.02562 * 9 7 2 15 15 H 1.09003 * 115.85695 * 359.66777 * 14 9 7 16 16 C 1.55843 * 101.05299 * 233.99093 * 14 9 7 17 17 H 1.08994 * 110.62911 * 85.71288 * 16 14 9 18 18 N 1.46501 * 110.62556 * 208.57170 * 16 14 9 19 19 C 1.34778 * 120.00116 * 274.06896 * 18 16 14 20 20 O 1.21278 * 119.99919 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99883 * 180.02562 * 19 18 16 22 22 O 1.42904 * 109.46895 * 180.02562 * 21 19 18 23 23 C 1.42897 * 113.99870 * 180.02562 * 22 21 19 24 24 C 1.52993 * 109.47148 * 179.97438 * 23 22 21 25 25 C 1.50704 * 109.47383 * 179.97438 * 24 23 22 26 26 C 1.38237 * 119.99626 * 269.73077 * 25 24 23 27 27 C 1.38247 * 119.99498 * 179.78554 * 26 25 24 28 28 C 1.38234 * 119.99994 * 0.46197 * 27 26 25 29 29 C 1.38240 * 119.99772 * 359.76571 * 28 27 26 30 30 C 1.38231 * 119.99766 * 89.99781 * 25 24 23 31 31 C 1.54848 * 103.44349 * 327.06128 * 16 14 9 32 32 H 0.97002 * 119.99442 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.62976 * 85.55021 * 12 10 9 34 34 H 1.09000 * 110.62916 * 208.41856 * 12 10 9 35 35 H 1.08998 * 110.62665 * 241.51374 * 13 12 10 36 36 H 1.09001 * 110.62748 * 118.49232 * 13 12 10 37 37 H 0.97003 * 119.99687 * 94.07194 * 18 16 14 38 38 H 1.09000 * 109.47190 * 59.99790 * 21 19 18 39 39 H 1.09003 * 109.46883 * 300.00107 * 21 19 18 40 40 H 1.09004 * 109.47388 * 59.99567 * 23 22 21 41 41 H 1.09004 * 109.46997 * 300.00108 * 23 22 21 42 42 H 1.09004 * 109.47397 * 300.00032 * 24 23 22 43 43 H 1.09000 * 109.46822 * 59.99951 * 24 23 22 44 44 H 1.07992 * 120.00351 * 359.97438 * 26 25 24 45 45 H 1.07991 * 119.99756 * 180.24892 * 27 26 25 46 46 H 1.07988 * 120.00200 * 179.78853 * 28 27 26 47 47 H 1.08006 * 119.99700 * 180.02562 * 29 28 27 48 48 H 1.07994 * 120.00351 * 359.97438 * 30 25 24 49 49 H 1.09002 * 110.62702 * 118.48965 * 31 16 14 50 50 H 1.09000 * 110.62922 * 241.50741 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0007 11 1 -0.8013 -1.7966 0.0057 12 6 -0.2743 -3.6107 1.2360 13 6 1.0668 -4.3850 1.2358 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 -0.0062 16 6 1.0673 -4.3845 -1.2378 17 1 1.6267 -4.1888 -2.1525 18 7 0.8335 -5.8216 -1.0753 19 6 1.7836 -6.7046 -1.4415 20 8 2.8322 -6.3095 -1.9053 21 6 1.5428 -8.1829 -1.2748 22 8 2.6879 -8.9063 -1.7304 23 6 2.5623 -10.3252 -1.6160 24 6 3.8389 -10.9933 -2.1305 25 6 3.7068 -12.4896 -2.0093 26 6 4.1200 -13.1286 -0.8552 27 6 3.9947 -14.5007 -0.7423 28 6 3.4651 -15.2348 -1.7870 29 6 3.0562 -14.5961 -2.9429 30 6 3.1775 -13.2236 -3.0542 31 6 -0.2737 -3.6103 -1.2382 32 1 -0.4849 0.8401 0.0004 33 1 -0.3815 -3.0290 2.1515 34 1 -1.1149 -4.2941 1.1159 35 1 0.8929 -5.4542 1.1143 36 1 1.6245 -4.1873 2.1511 37 1 -0.0051 -6.1376 -0.7040 38 1 0.6706 -8.4771 -1.8587 39 1 1.3675 -8.4060 -0.2224 40 1 1.7117 -10.6636 -2.2076 41 1 2.4075 -10.5931 -0.5708 42 1 3.9933 -10.7253 -3.1758 43 1 4.6897 -10.6549 -1.5392 44 1 4.5379 -12.5557 -0.0408 45 1 4.3138 -14.9995 0.1609 46 1 3.3704 -16.3070 -1.7001 47 1 2.6420 -15.1696 -3.7590 48 1 2.8583 -12.7248 -3.9573 49 1 -0.3807 -3.0280 -2.1535 50 1 -1.1128 -4.2954 -1.1175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110198720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:30 Heat of formation + Delta-G solvation = -10.317457 kcal Electronic energy + Delta-G solvation = -29158.968780 eV Core-core repulsion = 25152.411991 eV Total energy + Delta-G solvation = -4006.556789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.06500 -39.69967 -38.64651 -37.42112 -33.91474 -33.77235 -32.33232 -31.26351 -29.85323 -29.20692 -28.99798 -28.08416 -26.55701 -24.14085 -23.73384 -22.94898 -21.46871 -21.26940 -20.59479 -19.49452 -18.58034 -17.34675 -17.25541 -16.93719 -16.62477 -16.40841 -15.52854 -15.45563 -15.25406 -14.88490 -14.72559 -14.31525 -14.18067 -13.89543 -13.74851 -13.37434 -13.30222 -12.96274 -12.67461 -12.31207 -12.21961 -11.78721 -11.69284 -11.59694 -11.46598 -11.42004 -11.25488 -11.04001 -10.90901 -10.88918 -10.81593 -10.21330 -10.10511 -9.89462 -9.83873 -9.56705 -9.37203 -9.29663 -9.23243 -9.09496 -8.92314 -8.50101 -6.90866 -5.71951 -3.09841 0.94523 1.02267 2.84223 2.88918 3.40599 3.42036 3.45575 3.46965 3.93723 4.45606 4.46515 4.55001 4.66356 4.76684 4.77046 4.78960 4.98321 5.04054 5.07086 5.11701 5.14839 5.16992 5.21565 5.39244 5.50955 5.54770 5.57587 5.70790 5.78306 5.81169 5.85310 5.96855 6.06899 6.08717 6.11424 6.14054 6.26830 6.30274 6.33767 6.53652 6.60238 6.62658 6.67560 6.82283 6.83556 6.98240 7.01701 7.27460 7.53201 7.74285 7.84690 8.17597 8.51256 9.11447 9.73943 10.54201 11.37690 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.001666 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.342181 B =16805.255611 C =17011.354589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.210 4.210 8 H 0.079 0.921 9 N -0.590 5.590 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.128 3.872 15 H 0.086 0.914 16 C 0.129 3.871 17 H 0.082 0.918 18 N -0.712 5.712 19 C 0.508 3.492 20 O -0.521 6.521 21 C 0.045 3.955 22 O -0.362 6.362 23 C 0.067 3.933 24 C -0.080 4.080 25 C -0.080 4.080 26 C -0.114 4.114 27 C -0.119 4.119 28 C -0.124 4.124 29 C -0.120 4.120 30 C -0.115 4.115 31 C -0.140 4.140 32 H 0.254 0.746 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.395 0.605 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.066 0.934 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 -28.367 -2.078 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.208 4.208 3 Si 0.748 3.252 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.172 0.828 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.104 0.896 16 C 0.024 3.976 17 H 0.100 0.900 18 N -0.365 5.365 19 C 0.292 3.708 20 O -0.396 6.396 21 C -0.035 4.035 22 O -0.280 6.280 23 C -0.010 4.010 24 C -0.118 4.118 25 C -0.080 4.080 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.133 4.133 31 C -0.180 4.180 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.084 0.916 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.792 -27.614 -2.503 27.738 hybrid contribution -0.216 0.326 0.345 0.522 sum 0.576 -27.288 -2.158 27.379 Atomic orbital electron populations 1.69425 1.04981 1.25071 1.57802 1.24695 0.95662 0.97507 1.02909 0.86097 0.78368 0.82824 0.77909 1.21202 1.21580 1.21271 1.19026 0.90374 0.81870 1.42501 0.90346 1.46481 1.01591 0.98836 1.84152 1.23783 0.87746 0.95187 0.88607 0.82820 1.23056 0.95072 0.98206 1.01328 1.22892 0.97606 0.97504 0.98931 1.23193 0.96277 0.86071 0.92560 0.89641 1.22649 0.98158 0.76468 1.00337 0.89986 1.46145 1.18601 1.07231 1.64486 1.20129 0.84574 0.87305 0.78777 1.90732 1.25480 1.80063 1.43336 1.22236 0.89868 0.91080 1.00303 1.88006 1.37777 1.17017 1.85186 1.22485 0.97704 0.80777 0.99984 1.20466 0.97990 0.89734 1.03580 1.19762 0.98885 0.95019 0.94379 1.21138 0.99959 0.94700 0.97436 1.21175 0.99512 0.94132 0.98907 1.21180 0.99284 0.99922 0.93866 1.21172 0.99993 0.94627 0.97966 1.21125 0.99369 0.94106 0.98667 1.23289 0.93880 0.98411 1.02399 0.93535 0.92682 0.93661 0.93142 0.93074 0.77124 0.90583 0.90466 0.93088 0.93026 0.89810 0.89773 0.85839 0.86007 0.86154 0.86026 0.85880 0.91554 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.16 10.47 55.49 0.58 -25.58 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.59 -14.75 2.99 -145.82 -0.44 -15.19 16 10 C 0.15 3.42 4.72 -62.78 -0.30 3.13 16 11 H 0.16 3.92 5.52 -51.93 -0.29 3.64 16 12 C -0.14 -2.60 6.44 -24.23 -0.16 -2.76 16 13 C -0.13 -2.38 6.32 -24.25 -0.15 -2.53 16 14 C 0.13 2.71 5.35 -62.83 -0.34 2.37 16 15 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 16 C 0.13 2.42 3.08 -65.44 -0.20 2.22 16 17 H 0.08 1.74 7.70 -51.93 -0.40 1.34 16 18 N -0.71 -10.29 3.63 -51.40 -0.19 -10.48 16 19 C 0.51 7.87 7.90 -10.98 -0.09 7.78 16 20 O -0.52 -10.71 16.23 -14.35 -0.23 -10.94 16 21 C 0.05 0.50 6.42 36.01 0.23 0.73 16 22 O -0.36 -4.68 9.88 -55.14 -0.54 -5.23 16 23 C 0.07 0.61 5.92 37.15 0.22 0.83 16 24 C -0.08 -0.69 5.71 -27.88 -0.16 -0.85 16 25 C -0.08 -0.65 5.13 -104.62 -0.54 -1.18 16 26 C -0.11 -0.87 9.70 -39.58 -0.38 -1.25 16 27 C -0.12 -0.82 10.05 -39.58 -0.40 -1.21 16 28 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 29 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 30 C -0.11 -0.86 9.70 -39.58 -0.38 -1.24 16 31 C -0.14 -2.62 6.20 -24.22 -0.15 -2.77 16 32 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.71 7.82 -51.93 -0.41 0.31 16 35 H 0.05 0.78 6.48 -51.93 -0.34 0.44 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.39 4.43 8.02 -40.82 -0.33 4.10 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 43 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 47 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 50 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -33.08 403.50 -11.62 -44.70 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.02 Total: 5.12 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.84 Total: -5.58 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.04 Total: -51.24 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.78 Total: -16.17 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.08 -11.62 -44.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110198720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.382 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds