Wall clock time and date at job start Wed Apr 1 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48495 * 109.47384 * 240.00450 * 3 2 1 5 5 H 1.48500 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00230 * 3 2 1 7 7 C 1.38806 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00579 * 359.97438 * 7 2 1 10 10 C 1.50244 * 130.83200 * 0.03193 * 9 7 2 11 11 H 1.08997 * 115.85839 * 359.62345 * 10 9 7 12 12 C 1.55844 * 101.04850 * 233.94722 * 10 9 7 13 13 C 1.54856 * 103.44565 * 327.06255 * 12 10 9 14 14 C 1.50230 * 130.84393 * 180.02562 * 9 7 2 15 15 H 1.09003 * 115.85695 * 359.66777 * 14 9 7 16 16 C 1.55843 * 101.05299 * 233.99093 * 14 9 7 17 17 H 1.08994 * 110.62911 * 85.71288 * 16 14 9 18 18 N 1.46501 * 110.62556 * 208.57170 * 16 14 9 19 19 C 1.34778 * 120.00116 * 274.06896 * 18 16 14 20 20 O 1.21278 * 119.99919 * 0.02562 * 19 18 16 21 21 C 1.50703 * 119.99883 * 180.02562 * 19 18 16 22 22 O 1.42904 * 109.46895 * 180.02562 * 21 19 18 23 23 C 1.42897 * 113.99870 * 180.02562 * 22 21 19 24 24 C 1.52993 * 109.47148 * 179.97438 * 23 22 21 25 25 C 1.50704 * 109.47383 * 179.97438 * 24 23 22 26 26 C 1.38237 * 119.99626 * 269.73077 * 25 24 23 27 27 C 1.38247 * 119.99498 * 179.78554 * 26 25 24 28 28 C 1.38234 * 119.99994 * 0.46197 * 27 26 25 29 29 C 1.38240 * 119.99772 * 359.76571 * 28 27 26 30 30 C 1.38231 * 119.99766 * 89.99781 * 25 24 23 31 31 C 1.54848 * 103.44349 * 327.06128 * 16 14 9 32 32 H 0.97002 * 119.99442 * 359.97438 * 1 2 3 33 33 H 1.09001 * 110.62976 * 85.55021 * 12 10 9 34 34 H 1.09000 * 110.62916 * 208.41856 * 12 10 9 35 35 H 1.08998 * 110.62665 * 241.51374 * 13 12 10 36 36 H 1.09001 * 110.62748 * 118.49232 * 13 12 10 37 37 H 0.97003 * 119.99687 * 94.07194 * 18 16 14 38 38 H 1.09000 * 109.47190 * 59.99790 * 21 19 18 39 39 H 1.09003 * 109.46883 * 300.00107 * 21 19 18 40 40 H 1.09004 * 109.47388 * 59.99567 * 23 22 21 41 41 H 1.09004 * 109.46997 * 300.00108 * 23 22 21 42 42 H 1.09004 * 109.47397 * 300.00032 * 24 23 22 43 43 H 1.09000 * 109.46822 * 59.99951 * 24 23 22 44 44 H 1.07992 * 120.00351 * 359.97438 * 26 25 24 45 45 H 1.07991 * 119.99756 * 180.24892 * 27 26 25 46 46 H 1.07988 * 120.00200 * 179.78853 * 28 27 26 47 47 H 1.08006 * 119.99700 * 180.02562 * 29 28 27 48 48 H 1.07994 * 120.00351 * 359.97438 * 30 25 24 49 49 H 1.09002 * 110.62702 * 118.48965 * 31 16 14 50 50 H 1.09000 * 110.62922 * 241.50741 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1501 -2.6705 -0.0007 11 1 -0.8013 -1.7966 0.0057 12 6 -0.2743 -3.6107 1.2360 13 6 1.0668 -4.3850 1.2358 14 6 1.8187 -3.8072 -0.0005 15 1 2.9012 -3.9343 -0.0062 16 6 1.0673 -4.3845 -1.2378 17 1 1.6267 -4.1888 -2.1525 18 7 0.8335 -5.8216 -1.0753 19 6 1.7836 -6.7046 -1.4415 20 8 2.8322 -6.3095 -1.9053 21 6 1.5428 -8.1829 -1.2748 22 8 2.6879 -8.9063 -1.7304 23 6 2.5623 -10.3252 -1.6160 24 6 3.8389 -10.9933 -2.1305 25 6 3.7068 -12.4896 -2.0093 26 6 4.1200 -13.1286 -0.8552 27 6 3.9947 -14.5007 -0.7423 28 6 3.4651 -15.2348 -1.7870 29 6 3.0562 -14.5961 -2.9429 30 6 3.1775 -13.2236 -3.0542 31 6 -0.2737 -3.6103 -1.2382 32 1 -0.4849 0.8401 0.0004 33 1 -0.3815 -3.0290 2.1515 34 1 -1.1149 -4.2941 1.1159 35 1 0.8929 -5.4542 1.1143 36 1 1.6245 -4.1873 2.1511 37 1 -0.0051 -6.1376 -0.7040 38 1 0.6706 -8.4771 -1.8587 39 1 1.3675 -8.4060 -0.2224 40 1 1.7117 -10.6636 -2.2076 41 1 2.4075 -10.5931 -0.5708 42 1 3.9933 -10.7253 -3.1758 43 1 4.6897 -10.6549 -1.5392 44 1 4.5379 -12.5557 -0.0408 45 1 4.3138 -14.9995 0.1609 46 1 3.3704 -16.3070 -1.7001 47 1 2.6420 -15.1696 -3.7590 48 1 2.8583 -12.7248 -3.9573 49 1 -0.3807 -3.0280 -2.1535 50 1 -1.1128 -4.2954 -1.1175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110198720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:28 Heat of formation + Delta-G solvation = -28.585558 kcal Electronic energy + Delta-G solvation = -29159.760944 eV Core-core repulsion = 25152.411991 eV Total energy + Delta-G solvation = -4007.348953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.48697 -40.29304 -39.90142 -38.42422 -35.45741 -34.40273 -34.20678 -31.75292 -31.08677 -30.95486 -30.23542 -29.30378 -27.74992 -26.01522 -24.38851 -23.44347 -22.90312 -22.11667 -21.76754 -21.16248 -20.16322 -18.97670 -18.19325 -17.92344 -17.41984 -17.30270 -16.86252 -16.61451 -16.40738 -16.05670 -15.80552 -15.76075 -15.40820 -15.19642 -14.33864 -14.27647 -14.11488 -13.96821 -13.80986 -13.69566 -13.45213 -13.35768 -13.20711 -12.87784 -12.79168 -12.60808 -12.37998 -12.33974 -12.27673 -12.01501 -11.93361 -11.90241 -11.79127 -11.55208 -11.18065 -11.04464 -10.78174 -10.74525 -10.65387 -9.98327 -9.80266 -9.62663 -8.85912 -7.80005 -5.19167 0.42475 0.51724 1.45504 1.47840 1.53960 1.65790 1.86753 2.48708 2.82609 3.07701 3.33144 3.52619 3.79163 3.90759 3.97623 3.99752 4.10910 4.15518 4.19478 4.20864 4.22493 4.33306 4.35132 4.36418 4.43121 4.47759 4.49243 4.62450 4.64295 4.66654 4.72444 4.81940 4.94933 4.97391 4.98809 5.07964 5.16171 5.19922 5.20327 5.23964 5.33275 5.47251 5.55146 5.59471 5.65235 5.72991 5.76218 5.89850 6.10973 6.13889 6.28624 6.68149 7.05740 7.35610 7.68831 8.54930 9.26515 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029675 B = 0.001666 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.342181 B =16805.255611 C =17011.354589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.062 4.062 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.068 0.932 9 N -0.620 5.620 10 C 0.137 3.863 11 H 0.121 0.879 12 C -0.125 4.125 13 C -0.115 4.115 14 C 0.116 3.884 15 H 0.061 0.939 16 C 0.148 3.852 17 H 0.048 0.952 18 N -0.694 5.694 19 C 0.504 3.496 20 O -0.581 6.581 21 C 0.051 3.949 22 O -0.398 6.398 23 C 0.068 3.932 24 C -0.078 4.078 25 C -0.091 4.091 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.126 4.126 30 C -0.126 4.126 31 C -0.124 4.124 32 H 0.250 0.750 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.040 0.960 37 H 0.418 0.582 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.129 0.871 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.130 0.870 49 H 0.045 0.955 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -31.584 -1.482 31.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.804 3.196 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.356 4.356 8 H 0.086 0.914 9 N -0.342 5.342 10 C 0.031 3.969 11 H 0.139 0.861 12 C -0.164 4.164 13 C -0.154 4.154 14 C 0.008 3.992 15 H 0.079 0.921 16 C 0.041 3.959 17 H 0.066 0.934 18 N -0.349 5.349 19 C 0.291 3.709 20 O -0.460 6.460 21 C -0.028 4.028 22 O -0.318 6.318 23 C -0.008 4.008 24 C -0.115 4.115 25 C -0.091 4.091 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.144 4.144 30 C -0.144 4.144 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.256 0.744 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.147 0.853 45 H 0.157 0.843 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.148 0.852 49 H 0.064 0.936 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.888 -30.893 -1.887 30.964 hybrid contribution 0.345 1.245 0.133 1.298 sum -0.544 -29.649 -1.754 29.705 Atomic orbital electron populations 1.69654 1.05771 1.25148 1.58605 1.25400 0.96602 1.00116 1.03398 0.85192 0.77223 0.79374 0.77770 1.21104 1.21422 1.20868 1.19248 0.90424 0.83704 1.42243 0.91389 1.46750 1.03192 0.99422 1.84829 1.23726 0.85770 0.95573 0.91850 0.86137 1.22950 0.96908 0.98008 0.98522 1.22801 0.96490 0.99478 0.96672 1.23321 0.95635 0.84909 0.95291 0.92121 1.22052 0.97301 0.79066 0.97529 0.93413 1.45834 1.19615 1.05155 1.64266 1.21056 0.83394 0.89383 0.77040 1.90720 1.28022 1.81326 1.45885 1.22315 0.90364 0.87111 1.02983 1.87966 1.39094 1.18969 1.85742 1.22609 0.98183 0.78877 1.01088 1.20413 0.97829 0.90407 1.02881 1.19753 0.99789 0.94542 0.94988 1.21311 1.00263 0.95335 0.97592 1.21448 0.99283 0.93963 0.99765 1.21501 0.98648 1.01063 0.93614 1.21454 0.99768 0.94526 0.98686 1.21306 0.99592 0.94677 0.98855 1.23116 0.95301 0.98206 0.99733 0.94083 0.94724 0.89015 0.89126 0.94157 0.74375 0.86951 0.87071 0.91583 0.91695 0.90617 0.90734 0.85298 0.84340 0.84191 0.84268 0.85186 0.93594 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.85 10.47 21.65 0.23 -54.63 16 2 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.23 -13.10 10.59 84.03 0.89 -12.21 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 9 N -0.62 -31.84 2.99 -615.25 -1.84 -33.68 16 10 C 0.14 6.07 4.72 46.24 0.22 6.29 16 11 H 0.12 6.28 5.52 -2.39 -0.01 6.26 16 12 C -0.12 -4.44 6.44 32.21 0.21 -4.24 16 13 C -0.12 -3.98 6.32 32.20 0.20 -3.78 16 14 C 0.12 4.97 5.35 46.22 0.25 5.22 16 15 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 16 C 0.15 5.43 3.08 46.61 0.14 5.57 16 17 H 0.05 2.10 7.70 -2.39 -0.02 2.08 16 18 N -0.69 -17.98 3.63 -434.92 -1.58 -19.56 16 19 C 0.50 14.59 7.90 87.66 0.69 15.28 16 20 O -0.58 -24.07 16.23 16.01 0.26 -23.81 16 21 C 0.05 0.94 6.42 71.24 0.46 1.40 16 22 O -0.40 -9.54 9.88 -129.94 -1.28 -10.82 16 23 C 0.07 1.09 5.92 71.98 0.43 1.52 16 24 C -0.08 -1.29 5.71 29.85 0.17 -1.12 16 25 C -0.09 -1.36 5.13 -19.87 -0.10 -1.47 16 26 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16 27 C -0.13 -1.51 10.05 22.27 0.22 -1.28 16 28 C -0.13 -1.44 10.05 22.27 0.22 -1.21 16 29 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 30 C -0.13 -1.72 9.70 22.27 0.22 -1.51 16 31 C -0.12 -4.46 6.20 32.22 0.20 -4.26 16 32 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 2.42 7.82 -2.39 -0.02 2.41 16 35 H 0.09 2.39 6.48 -2.39 -0.02 2.37 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 7.08 8.02 -92.71 -0.74 6.34 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.08 1.33 8.09 -2.38 -0.02 1.32 16 43 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 44 H 0.13 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.14 1.08 8.06 -2.92 -0.02 1.06 16 46 H 0.14 0.91 8.06 -2.92 -0.02 0.89 16 47 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 48 H 0.13 1.48 8.06 -2.91 -0.02 1.45 16 49 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.10 2.67 7.34 -2.39 -0.02 2.65 16 Total: -1.00 -77.33 403.50 3.33 -74.00 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.19 Total: 21.45 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.32 Total: -1.68 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.19 Total: -107.86 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.02 Total: -34.63 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.33 3.33 -74.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110198720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.419 kcal (2) G-P(sol) polarization free energy of solvation -77.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds