Wall clock time and date at job start Wed Apr 1 2020 02:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47345 * 270.00154 * 3 2 1 5 5 H 1.48504 * 109.46745 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.47185 * 149.99943 * 3 2 1 7 7 C 1.38816 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00465 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99953 * 173.40249 * 9 7 2 11 11 C 1.53002 * 109.47300 * 301.12043 * 10 9 7 12 12 N 1.46506 * 109.47019 * 305.24757 * 11 10 9 13 13 C 1.34774 * 119.99826 * 175.76233 * 12 11 10 14 14 O 1.21282 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00064 * 179.97438 * 13 12 11 16 16 H 1.09003 * 110.82889 * 62.26473 * 15 13 12 17 17 C 1.54711 * 110.94159 * 298.55422 * 15 13 12 18 18 O 1.43769 * 102.78904 * 267.15295 * 17 15 13 19 19 C 1.36134 * 109.25816 * 332.33245 * 18 17 15 20 20 C 1.39290 * 129.88744 * 198.45615 * 19 18 17 21 21 C 1.37925 * 120.24247 * 180.60608 * 20 19 18 22 22 C 1.38283 * 120.35238 * 0.09578 * 21 20 19 23 23 C 1.38351 * 119.76500 * 0.10119 * 22 21 20 24 24 C 1.37738 * 119.97799 * 359.42560 * 23 22 21 25 25 C 1.52999 * 109.47051 * 61.12292 * 10 9 7 26 26 C 1.52995 * 109.47468 * 59.99903 * 25 10 9 27 27 C 1.53002 * 109.47278 * 59.99883 * 26 25 10 28 28 C 1.52999 * 109.46966 * 300.00424 * 27 26 25 29 29 C 1.53000 * 109.47258 * 181.12044 * 10 9 7 30 30 H 0.97003 * 119.99702 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00148 * 353.40780 * 9 7 2 32 32 H 1.08996 * 109.47161 * 185.24779 * 11 10 9 33 33 H 1.08997 * 109.46793 * 65.24755 * 11 10 9 34 34 H 0.96997 * 119.99979 * 355.77128 * 12 11 10 35 35 H 1.08990 * 110.75110 * 148.82643 * 17 15 13 36 36 H 1.09001 * 110.90431 * 25.54509 * 17 15 13 37 37 H 1.08003 * 119.87588 * 0.58793 * 20 19 18 38 38 H 1.08004 * 119.82145 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.11655 * 179.82531 * 22 21 20 40 40 H 1.08008 * 120.00441 * 179.67523 * 23 22 21 41 41 H 1.09002 * 109.47148 * 180.02562 * 25 10 9 42 42 H 1.09000 * 109.46846 * 299.99817 * 25 10 9 43 43 H 1.09007 * 109.46864 * 300.00387 * 26 25 10 44 44 H 1.08990 * 109.47322 * 180.02562 * 26 25 10 45 45 H 1.09000 * 109.47198 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.46550 * 60.00010 * 27 26 25 47 47 H 1.09007 * 109.47394 * 299.99629 * 28 27 26 48 48 H 1.09000 * 109.46846 * 179.97438 * 28 27 26 49 49 H 1.09006 * 109.47126 * 59.99800 * 29 10 9 50 50 H 1.08996 * 109.47558 * 179.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4627 0.1441 11 6 3.7218 -3.1302 1.4644 12 7 3.9392 -2.1923 2.5687 13 6 3.5827 -2.5337 3.8228 14 8 3.0824 -3.6174 4.0373 15 6 3.8069 -1.5692 4.9589 16 1 3.2312 -0.6555 4.8109 17 6 5.3120 -1.2532 5.1271 18 8 5.7333 -2.2212 6.1030 19 6 4.6754 -2.5513 6.8937 20 6 4.6524 -3.1551 8.1488 21 6 3.4502 -3.4124 8.7739 22 6 2.2575 -3.0757 8.1605 23 6 2.2715 -2.4794 6.9121 24 6 3.4712 -2.2126 6.2903 25 6 3.7632 -3.3923 -1.0199 26 6 4.1533 -2.7249 -2.3402 27 6 5.6574 -2.4441 -2.3448 28 6 6.0062 -1.5145 -1.1808 29 6 5.6160 -2.1820 0.1395 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3679 -0.0975 32 1 4.3338 -4.0191 1.6169 33 1 2.6701 -3.4145 1.4309 34 1 4.3397 -1.3256 2.3973 35 1 5.4542 -0.2397 5.5022 36 1 5.8464 -1.3943 4.1877 37 1 5.5794 -3.4229 8.6340 38 1 3.4403 -3.8805 9.7472 39 1 1.3182 -3.2816 8.6522 40 1 1.3421 -2.2196 6.4272 41 1 4.3078 -4.3303 -0.9117 42 1 2.6917 -3.5923 -1.0166 43 1 3.6084 -1.7870 -2.4482 44 1 3.9044 -3.3869 -3.1695 45 1 5.9353 -1.9682 -3.2853 46 1 6.2023 -3.3819 -2.2368 47 1 5.4612 -0.5767 -1.2888 48 1 7.0778 -1.3149 -1.1838 49 1 5.8646 -1.5197 0.9688 50 1 6.1610 -3.1197 0.2480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120255176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:46 Heat of formation + Delta-G solvation = -34.662053 kcal Electronic energy + Delta-G solvation = -31420.949391 eV Core-core repulsion = 27413.336941 eV Total energy + Delta-G solvation = -4007.612450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.44704 -39.45782 -38.29691 -37.40093 -34.56946 -33.37882 -32.80743 -31.34771 -30.41424 -30.10033 -29.58931 -28.93882 -25.64301 -23.97471 -23.51255 -22.58826 -22.24922 -21.88318 -20.56777 -19.90872 -18.39747 -17.82039 -17.69110 -16.88664 -16.73157 -15.99832 -15.52567 -15.29800 -15.09440 -14.62175 -14.41599 -14.19140 -14.00489 -13.74010 -13.56199 -13.45530 -13.13543 -13.00342 -12.70165 -12.60369 -12.35702 -12.24461 -12.05239 -11.76481 -11.74891 -11.58563 -11.25172 -11.21510 -11.03772 -10.88860 -10.82581 -10.68043 -10.42713 -10.06337 -9.95415 -9.71359 -9.56795 -9.39751 -8.98060 -8.88355 -8.50664 -8.17962 -7.36007 -5.82387 -3.19594 1.25648 1.38517 2.88169 3.22836 3.24614 3.29346 3.37421 3.44269 3.86679 4.20864 4.47644 4.50271 4.79731 4.90070 4.97627 5.01041 5.07595 5.08905 5.17262 5.25722 5.28034 5.34269 5.35441 5.49472 5.55695 5.57938 5.63714 5.65332 5.79964 5.85929 5.94486 5.97496 6.00921 6.07624 6.15500 6.27237 6.27736 6.39805 6.40006 6.46190 6.48414 6.53561 6.54828 6.65654 6.68314 6.88265 6.96260 7.01561 7.12547 7.91456 7.95015 8.35996 8.61072 9.13004 9.84442 10.03790 11.35708 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003570 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.080171 B = 7840.361327 C = 8857.272169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.235 4.235 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.198 3.802 11 C 0.119 3.881 12 N -0.700 5.700 13 C 0.523 3.477 14 O -0.535 6.535 15 C -0.106 4.106 16 H 0.125 0.875 17 C 0.063 3.937 18 O -0.302 6.302 19 C 0.108 3.892 20 C -0.143 4.143 21 C -0.086 4.086 22 C -0.150 4.150 23 C -0.050 4.050 24 C -0.141 4.141 25 C -0.117 4.117 26 C -0.110 4.110 27 C -0.115 4.115 28 C -0.116 4.116 29 C -0.118 4.118 30 H 0.258 0.742 31 H 0.361 0.639 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.741 -2.988 9.551 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.006 4.006 12 N -0.350 5.350 13 C 0.307 3.693 14 O -0.412 6.412 15 C -0.127 4.127 16 H 0.143 0.857 17 C -0.013 4.013 18 O -0.216 6.216 19 C 0.063 3.937 20 C -0.162 4.162 21 C -0.104 4.104 22 C -0.168 4.168 23 C -0.068 4.068 24 C -0.142 4.142 25 C -0.156 4.156 26 C -0.147 4.147 27 C -0.152 4.152 28 C -0.153 4.153 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.232 0.768 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.362 -3.899 9.691 16.185 hybrid contribution 0.417 1.880 -0.364 1.960 sum 12.779 -2.019 9.328 15.950 Atomic orbital electron populations 1.69692 1.05090 1.25643 1.57362 1.24647 0.95055 0.96833 1.02173 0.86696 0.79113 0.85666 0.77786 1.21229 1.21991 1.20443 1.18926 0.80372 0.94494 1.42663 0.89155 1.42801 1.03989 1.02435 1.88676 1.19785 0.89966 0.87931 0.91681 1.21821 1.01927 0.90711 0.86171 1.45657 1.62678 1.20226 1.06399 1.19869 0.78656 0.87393 0.83394 1.90689 1.43346 1.23148 1.84035 1.21609 0.98114 1.00354 0.92635 0.85742 1.23825 0.92147 0.92614 0.92679 1.86818 1.33082 1.57927 1.43736 1.19559 0.85989 0.96484 0.91624 1.20176 0.99092 1.04675 0.92242 1.20837 0.91496 0.98474 0.99568 1.21017 0.98289 1.01764 0.95778 1.20360 0.96636 0.95713 0.94075 1.20171 0.94126 1.05462 0.94466 1.21805 1.01794 0.96989 0.95056 1.21374 0.94961 1.01850 0.96561 1.21501 0.97266 0.98871 0.97575 1.21481 0.99688 0.99369 0.94807 1.21760 0.96005 1.00577 0.97285 0.93127 0.80568 0.92983 0.90827 0.76823 0.89370 0.87280 0.85626 0.85301 0.85475 0.85601 0.93357 0.91236 0.90346 0.93318 0.92876 0.92809 0.91685 0.92887 0.92536 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.97 55.49 0.78 -27.06 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 20.37 27.67 -169.99 -4.70 15.66 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -5.84 6.62 56.52 0.37 -5.46 16 7 C -0.23 -5.87 9.20 -15.06 -0.14 -6.01 16 8 H 0.09 2.53 6.99 -52.49 -0.37 2.16 16 9 N -0.74 -14.64 3.36 -47.23 -0.16 -14.80 16 10 C 0.20 3.26 0.40 -131.82 -0.05 3.21 16 11 C 0.12 2.10 4.30 -4.04 -0.02 2.08 16 12 N -0.70 -11.58 4.87 -60.29 -0.29 -11.87 16 13 C 0.52 9.23 7.16 -10.99 -0.08 9.15 16 14 O -0.54 -11.50 16.15 5.56 0.09 -11.41 16 15 C -0.11 -1.51 3.52 -91.56 -0.32 -1.83 16 16 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 17 C 0.06 0.73 7.52 38.06 0.29 1.02 16 18 O -0.30 -4.29 11.10 -20.17 -0.22 -4.51 16 19 C 0.11 1.57 7.04 -38.95 -0.27 1.30 16 20 C -0.14 -1.76 10.06 -39.31 -0.40 -2.16 16 21 C -0.09 -0.93 10.01 -39.68 -0.40 -1.33 16 22 C -0.15 -1.77 10.07 -39.52 -0.40 -2.17 16 23 C -0.05 -0.70 10.03 -39.72 -0.40 -1.10 16 24 C -0.14 -2.11 4.94 -104.10 -0.51 -2.63 16 25 C -0.12 -1.90 4.58 -26.73 -0.12 -2.02 16 26 C -0.11 -1.69 5.77 -26.73 -0.15 -1.85 16 27 C -0.11 -1.49 5.92 -26.73 -0.16 -1.64 16 28 C -0.12 -1.51 5.75 -26.73 -0.15 -1.67 16 29 C -0.12 -1.59 4.66 -26.73 -0.12 -1.72 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.36 7.13 4.43 -40.82 -0.18 6.95 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.55 7.54 -51.93 -0.39 1.16 16 34 H 0.40 5.95 7.10 -40.82 -0.29 5.66 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.12 7.55 -51.93 -0.39 0.73 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 40 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 1.30 7.21 -51.93 -0.37 0.93 16 43 H 0.08 1.43 7.60 -51.93 -0.39 1.04 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.95 6.84 -51.93 -0.36 0.60 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.71 7.11 -51.93 -0.37 0.34 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -32.21 390.58 -9.91 -42.12 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -7.77 Total: 15.21 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.51 Total: -9.23 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.32 Total: -53.73 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.13 Total: -15.92 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.70 Total: 15.66 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.21 -9.91 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120255176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.459 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds