Wall clock time and date at job start Wed Apr 1 2020 02:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47345 * 270.00154 * 3 2 1 5 5 H 1.48504 * 109.46745 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.47185 * 149.99943 * 3 2 1 7 7 C 1.38816 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00465 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99920 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99953 * 173.40249 * 9 7 2 11 11 C 1.53002 * 109.47300 * 301.12043 * 10 9 7 12 12 N 1.46506 * 109.47019 * 305.24757 * 11 10 9 13 13 C 1.34774 * 119.99826 * 175.76233 * 12 11 10 14 14 O 1.21282 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00064 * 179.97438 * 13 12 11 16 16 H 1.09003 * 110.82889 * 62.26473 * 15 13 12 17 17 C 1.54711 * 110.94159 * 298.55422 * 15 13 12 18 18 O 1.43769 * 102.78904 * 267.15295 * 17 15 13 19 19 C 1.36134 * 109.25816 * 332.33245 * 18 17 15 20 20 C 1.39290 * 129.88744 * 198.45615 * 19 18 17 21 21 C 1.37925 * 120.24247 * 180.60608 * 20 19 18 22 22 C 1.38283 * 120.35238 * 0.09578 * 21 20 19 23 23 C 1.38351 * 119.76500 * 0.10119 * 22 21 20 24 24 C 1.37738 * 119.97799 * 359.42560 * 23 22 21 25 25 C 1.52999 * 109.47051 * 61.12292 * 10 9 7 26 26 C 1.52995 * 109.47468 * 59.99903 * 25 10 9 27 27 C 1.53002 * 109.47278 * 59.99883 * 26 25 10 28 28 C 1.52999 * 109.46966 * 300.00424 * 27 26 25 29 29 C 1.53000 * 109.47258 * 181.12044 * 10 9 7 30 30 H 0.97003 * 119.99702 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00148 * 353.40780 * 9 7 2 32 32 H 1.08996 * 109.47161 * 185.24779 * 11 10 9 33 33 H 1.08997 * 109.46793 * 65.24755 * 11 10 9 34 34 H 0.96997 * 119.99979 * 355.77128 * 12 11 10 35 35 H 1.08990 * 110.75110 * 148.82643 * 17 15 13 36 36 H 1.09001 * 110.90431 * 25.54509 * 17 15 13 37 37 H 1.08003 * 119.87588 * 0.58793 * 20 19 18 38 38 H 1.08004 * 119.82145 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.11655 * 179.82531 * 22 21 20 40 40 H 1.08008 * 120.00441 * 179.67523 * 23 22 21 41 41 H 1.09002 * 109.47148 * 180.02562 * 25 10 9 42 42 H 1.09000 * 109.46846 * 299.99817 * 25 10 9 43 43 H 1.09007 * 109.46864 * 300.00387 * 26 25 10 44 44 H 1.08990 * 109.47322 * 180.02562 * 26 25 10 45 45 H 1.09000 * 109.47198 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.46550 * 60.00010 * 27 26 25 47 47 H 1.09007 * 109.47394 * 299.99629 * 28 27 26 48 48 H 1.09000 * 109.46846 * 179.97438 * 28 27 26 49 49 H 1.09006 * 109.47126 * 59.99800 * 29 10 9 50 50 H 1.08996 * 109.47558 * 179.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4399 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1120 -2.4627 0.1441 11 6 3.7218 -3.1302 1.4644 12 7 3.9392 -2.1923 2.5687 13 6 3.5827 -2.5337 3.8228 14 8 3.0824 -3.6174 4.0373 15 6 3.8069 -1.5692 4.9589 16 1 3.2312 -0.6555 4.8109 17 6 5.3120 -1.2532 5.1271 18 8 5.7333 -2.2212 6.1030 19 6 4.6754 -2.5513 6.8937 20 6 4.6524 -3.1551 8.1488 21 6 3.4502 -3.4124 8.7739 22 6 2.2575 -3.0757 8.1605 23 6 2.2715 -2.4794 6.9121 24 6 3.4712 -2.2126 6.2903 25 6 3.7632 -3.3923 -1.0199 26 6 4.1533 -2.7249 -2.3402 27 6 5.6574 -2.4441 -2.3448 28 6 6.0062 -1.5145 -1.1808 29 6 5.6160 -2.1820 0.1395 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3679 -0.0975 32 1 4.3338 -4.0191 1.6169 33 1 2.6701 -3.4145 1.4309 34 1 4.3397 -1.3256 2.3973 35 1 5.4542 -0.2397 5.5022 36 1 5.8464 -1.3943 4.1877 37 1 5.5794 -3.4229 8.6340 38 1 3.4403 -3.8805 9.7472 39 1 1.3182 -3.2816 8.6522 40 1 1.3421 -2.2196 6.4272 41 1 4.3078 -4.3303 -0.9117 42 1 2.6917 -3.5923 -1.0166 43 1 3.6084 -1.7870 -2.4482 44 1 3.9044 -3.3869 -3.1695 45 1 5.9353 -1.9682 -3.2853 46 1 6.2023 -3.3819 -2.2368 47 1 5.4612 -0.5767 -1.2888 48 1 7.0778 -1.3149 -1.1838 49 1 5.8646 -1.5197 0.9688 50 1 6.1610 -3.1197 0.2480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120255176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:45 Heat of formation + Delta-G solvation = -55.190013 kcal Electronic energy + Delta-G solvation = -31421.839550 eV Core-core repulsion = 27413.336941 eV Total energy + Delta-G solvation = -4008.502609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.49406 -40.81043 -39.65309 -38.35108 -35.97055 -35.12685 -33.95060 -33.02148 -31.61220 -31.15194 -30.91257 -30.12363 -26.92964 -25.40970 -25.01757 -23.69267 -23.36686 -22.90121 -21.79375 -21.25953 -19.81068 -19.70775 -18.86700 -17.93065 -17.74304 -17.23108 -16.66369 -16.60167 -16.35567 -16.22653 -15.86035 -15.50783 -15.10388 -15.02355 -14.93863 -14.53482 -14.40184 -14.30314 -14.00289 -13.96073 -13.69479 -13.52187 -13.33582 -12.95586 -12.85439 -12.77749 -12.65401 -12.63362 -12.36023 -12.18406 -12.09553 -11.94170 -11.78232 -11.69265 -11.26860 -11.20819 -11.03076 -10.77401 -10.73096 -9.99110 -9.88965 -9.25693 -9.16037 -7.93637 -5.27454 0.28104 0.40535 1.37378 1.42966 1.50412 1.55049 2.18208 2.27652 2.53428 2.81273 3.16079 3.37068 3.49162 3.53514 3.78715 3.85010 3.86699 3.95013 4.04998 4.17215 4.21001 4.34102 4.36715 4.42104 4.42994 4.49478 4.58870 4.60792 4.67261 4.70744 4.71324 4.76084 4.86522 4.92987 5.02964 5.04354 5.16068 5.21416 5.34012 5.39994 5.41396 5.43724 5.47773 5.51573 5.53764 5.61105 5.62365 5.71944 5.88873 6.16764 6.29208 6.57607 7.16618 7.24103 7.89178 8.10993 9.28508 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012155 B = 0.003570 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.080171 B = 7840.361327 C = 8857.272169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.065 4.065 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.309 1.309 6 H -0.234 1.234 7 C -0.199 4.199 8 H 0.046 0.954 9 N -0.729 5.729 10 C 0.196 3.804 11 C 0.126 3.874 12 N -0.692 5.692 13 C 0.517 3.483 14 O -0.582 6.582 15 C -0.105 4.105 16 H 0.134 0.866 17 C 0.066 3.934 18 O -0.315 6.315 19 C 0.089 3.911 20 C -0.148 4.148 21 C -0.079 4.079 22 C -0.152 4.152 23 C -0.076 4.076 24 C -0.168 4.168 25 C -0.116 4.116 26 C -0.108 4.108 27 C -0.109 4.109 28 C -0.115 4.115 29 C -0.113 4.113 30 H 0.252 0.748 31 H 0.368 0.632 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.408 0.592 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.073 0.927 42 H 0.028 0.972 43 H 0.043 0.957 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.072 0.928 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.104 -2.403 10.694 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.256 4.256 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.236 1.236 6 H -0.158 1.158 7 C -0.330 4.330 8 H 0.064 0.936 9 N -0.373 5.373 10 C 0.106 3.894 11 C 0.000 4.000 12 N -0.342 5.342 13 C 0.303 3.697 14 O -0.462 6.462 15 C -0.127 4.127 16 H 0.152 0.848 17 C -0.008 4.008 18 O -0.229 6.229 19 C 0.044 3.956 20 C -0.167 4.167 21 C -0.096 4.096 22 C -0.170 4.170 23 C -0.094 4.094 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.153 4.153 29 C -0.151 4.151 30 H 0.061 0.939 31 H 0.203 0.797 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.244 0.756 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.184 0.816 39 H 0.169 0.831 40 H 0.134 0.866 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.813 -3.318 10.827 20.271 hybrid contribution -1.011 1.499 -0.718 1.945 sum 15.801 -1.819 10.109 18.846 Atomic orbital electron populations 1.69912 1.07488 1.26096 1.60695 1.25419 0.95773 1.00920 1.03462 0.85567 0.79302 0.80030 0.77817 1.21324 1.23634 1.15784 1.18699 0.82588 0.92464 1.39239 0.93640 1.42679 1.02014 1.04249 1.88321 1.19998 0.92370 0.86215 0.90780 1.21671 0.99226 0.91840 0.87260 1.45606 1.62260 1.20413 1.05933 1.20579 0.77453 0.87387 0.84291 1.90656 1.45350 1.25417 1.84795 1.21647 1.00587 0.99449 0.90977 0.84821 1.24059 0.89848 0.93706 0.93226 1.86776 1.33228 1.58729 1.44168 1.19865 0.85747 0.97397 0.92580 1.20611 1.00642 1.03776 0.91660 1.21294 0.90480 0.97160 1.00697 1.21370 1.00004 1.00692 0.94925 1.20556 0.96264 0.97138 0.95472 1.20374 0.94816 1.06768 0.95004 1.21789 0.99626 0.98373 0.95832 1.21330 0.97137 1.00069 0.96020 1.21480 0.94675 1.00101 0.98424 1.21503 1.01387 0.98331 0.94051 1.21758 0.92505 1.02280 0.98512 0.93949 0.79749 0.91584 0.95717 0.75550 0.86228 0.85719 0.83453 0.81563 0.83132 0.86641 0.90798 0.95328 0.93810 0.92597 0.91662 0.90768 0.93349 0.89749 0.90939 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.61 13.97 21.65 0.30 -62.31 16 2 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 3 Si 0.94 42.31 27.67 68.60 1.90 44.20 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.23 -8.67 6.62 99.48 0.66 -8.01 16 7 C -0.20 -10.38 9.20 84.03 0.77 -9.60 16 8 H 0.05 2.77 6.99 -2.91 -0.02 2.75 16 9 N -0.73 -28.81 3.36 -303.34 -1.02 -29.83 16 10 C 0.20 6.31 0.40 3.60 0.00 6.32 16 11 C 0.13 4.50 4.30 86.38 0.37 4.87 16 12 N -0.69 -22.59 4.87 -463.05 -2.26 -24.85 16 13 C 0.52 18.49 7.16 87.66 0.63 19.11 16 14 O -0.58 -26.08 16.15 -3.03 -0.05 -26.13 16 15 C -0.11 -2.96 3.52 -11.40 -0.04 -3.00 16 16 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 17 C 0.07 1.39 7.52 72.57 0.55 1.94 16 18 O -0.31 -8.40 11.10 -95.08 -1.06 -9.45 16 19 C 0.09 2.48 7.04 22.68 0.16 2.64 16 20 C -0.15 -3.35 10.06 22.45 0.23 -3.13 16 21 C -0.08 -1.52 10.01 22.21 0.22 -1.30 16 22 C -0.15 -3.41 10.07 22.31 0.22 -3.18 16 23 C -0.08 -2.19 10.03 22.18 0.22 -1.96 16 24 C -0.17 -5.05 4.94 -19.53 -0.10 -5.15 16 25 C -0.12 -3.80 4.58 30.59 0.14 -3.66 16 26 C -0.11 -3.23 5.77 30.59 0.18 -3.05 16 27 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 28 C -0.12 -2.50 5.75 30.59 0.18 -2.33 16 29 C -0.11 -2.59 4.66 30.60 0.14 -2.45 16 30 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.37 13.74 4.43 -92.71 -0.41 13.33 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.02 1.11 7.54 -2.39 -0.02 1.10 16 34 H 0.41 11.38 7.10 -92.71 -0.66 10.73 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 2.16 7.55 -2.39 -0.02 2.14 16 37 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.12 3.38 8.06 -2.91 -0.02 3.36 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.03 1.14 7.21 -2.39 -0.02 1.12 16 43 H 0.04 1.60 7.60 -2.38 -0.02 1.58 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 1.23 6.84 -2.38 -0.02 1.21 16 48 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 49 H 0.07 1.48 7.11 -2.38 -0.02 1.46 16 50 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -77.00 390.58 2.18 -74.82 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.16 Total: 42.93 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.52 Total: -9.38 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -2.97 Total: -116.99 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.10 Total: -35.58 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.90 Total: 44.20 kcal Total: -77.00 2.18 -74.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120255176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.625 kcal (2) G-P(sol) polarization free energy of solvation -76.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds