Wall clock time and date at job start Wed Apr 1 2020 03:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00256 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00691 * 3 2 1 5 5 H 1.48508 * 109.46873 * 30.00144 * 3 2 1 6 6 H 1.48498 * 109.47609 * 150.00080 * 3 2 1 7 7 C 1.38812 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.47137 * 125.58257 * 359.97336 * 9 7 2 11 11 C 1.54607 * 107.36428 * 179.11256 * 10 9 7 12 12 C 1.53658 * 102.73022 * 339.24245 * 11 10 9 13 13 C 1.52376 * 116.38792 * 264.51025 * 12 11 10 14 14 N 1.47887 * 85.58653 * 218.64097 * 13 12 11 15 15 C 1.34781 * 134.34294 * 203.44630 * 14 13 12 16 16 O 1.21274 * 120.00013 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99712 * 0.05480 * 15 14 13 18 18 O 1.42902 * 109.46910 * 179.97438 * 17 15 14 19 19 C 1.42898 * 113.99732 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46710 * 179.97438 * 19 18 17 21 21 C 1.50707 * 109.46757 * 180.02562 * 20 19 18 22 22 C 1.38236 * 120.00075 * 269.72649 * 21 20 19 23 23 C 1.38232 * 120.00088 * 179.76554 * 22 21 20 24 24 C 1.38237 * 119.99987 * 0.51570 * 23 22 21 25 25 C 1.38241 * 119.99834 * 359.73975 * 24 23 22 26 26 C 1.38230 * 120.00025 * 90.00470 * 21 20 19 27 27 C 1.47885 * 91.31801 * 23.48707 * 14 13 12 28 28 C 1.47725 * 125.59073 * 180.02562 * 9 7 2 29 29 H 0.97004 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.87068 * 59.66707 * 10 9 7 31 31 H 1.09000 * 109.98285 * 298.62086 * 10 9 7 32 32 H 1.08993 * 110.75921 * 97.55525 * 11 10 9 33 33 H 1.09003 * 110.75908 * 220.93334 * 11 10 9 34 34 H 1.08995 * 113.85266 * 332.80710 * 13 12 11 35 35 H 1.09002 * 113.85194 * 104.47686 * 13 12 11 36 36 H 1.09001 * 109.47141 * 299.99813 * 17 15 14 37 37 H 1.09005 * 109.47107 * 60.00026 * 17 15 14 38 38 H 1.08994 * 109.47817 * 300.00101 * 19 18 17 39 39 H 1.09008 * 109.46974 * 60.00578 * 19 18 17 40 40 H 1.08999 * 109.47583 * 300.00357 * 20 19 18 41 41 H 1.08995 * 109.47105 * 60.00693 * 20 19 18 42 42 H 1.08007 * 119.99815 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.99799 * 180.23059 * 23 22 21 44 44 H 1.07995 * 120.00222 * 179.72790 * 24 23 22 45 45 H 1.08001 * 119.99950 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.00060 * 0.02562 * 26 21 20 47 47 H 1.09005 * 113.85578 * 222.34797 * 27 14 13 48 48 H 1.09009 * 113.97216 * 90.69198 * 27 14 13 49 49 H 1.08994 * 110.39981 * 321.21907 * 28 9 7 50 50 H 1.09008 * 110.39351 * 83.62265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1388 -2.5313 -0.0017 11 6 -0.4544 -4.0446 -0.0259 12 6 0.8476 -4.6534 -0.5691 13 6 0.8958 -4.9220 -2.0682 14 7 1.6270 -6.1560 -1.7079 15 6 2.4868 -6.9653 -2.3577 16 8 2.9445 -7.9387 -1.7976 17 6 2.8799 -6.6602 -3.7802 18 8 3.7942 -7.6550 -4.2455 19 6 4.2315 -7.4584 -5.5916 20 6 5.2018 -8.5754 -5.9809 21 6 5.6635 -8.3677 -7.4004 22 6 4.9607 -8.9365 -8.4461 23 6 5.3814 -8.7419 -9.7484 24 6 6.5110 -7.9873 -10.0044 25 6 7.2168 -7.4228 -8.9584 26 6 6.7930 -7.6130 -7.6564 27 6 1.0385 -6.1493 -0.3512 28 6 1.9361 -3.7333 -0.0017 29 1 -0.4850 0.8401 0.0004 30 1 -0.5579 -2.0513 -0.8860 31 1 -0.5573 -2.0800 0.8979 32 1 -0.6629 -4.4118 0.9789 33 1 -1.2881 -4.2547 -0.6960 34 1 -0.0816 -5.1034 -2.5151 35 1 1.4945 -4.2019 -2.6261 36 1 1.9908 -6.6600 -4.4108 37 1 3.3563 -5.6807 -3.8234 38 1 3.3705 -7.4754 -6.2597 39 1 4.7355 -6.4952 -5.6729 40 1 6.0629 -8.5581 -5.3129 41 1 4.6983 -9.5387 -5.8996 42 1 4.0805 -9.5296 -8.2458 43 1 4.8302 -9.1833 -10.5656 44 1 6.8422 -7.8389 -11.0216 45 1 8.0996 -6.8336 -9.1583 46 1 7.3449 -7.1727 -6.8391 47 1 1.7491 -6.3925 0.4388 48 1 0.1046 -6.7058 -0.2707 49 1 2.8188 -3.7498 -0.6409 50 1 2.1957 -4.0327 1.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148906014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:02 Heat of formation + Delta-G solvation = 8.623862 kcal Electronic energy + Delta-G solvation = -28871.732246 eV Core-core repulsion = 24865.996814 eV Total energy + Delta-G solvation = -4005.735432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.56622 -39.70126 -38.70229 -37.38135 -35.58509 -33.76459 -32.28553 -31.23627 -30.25560 -29.34145 -28.58704 -27.10256 -26.16777 -25.44146 -23.78384 -23.41099 -22.92241 -21.26908 -20.34070 -19.37365 -18.30421 -17.32927 -17.17155 -16.86600 -16.61359 -16.44259 -15.74548 -15.57760 -15.25710 -15.01206 -14.83834 -14.48819 -13.96575 -13.87191 -13.75907 -13.70035 -13.30162 -13.04916 -12.87868 -12.72572 -12.38427 -12.26857 -11.89053 -11.83718 -11.70491 -11.56828 -11.40025 -11.23663 -11.12356 -10.96426 -10.79714 -10.43340 -10.21782 -10.12571 -9.90462 -9.89309 -9.70517 -9.45780 -9.26849 -9.07325 -8.63929 -8.56567 -6.88200 -5.75582 -3.09073 0.97029 1.05175 2.55984 2.70253 3.37119 3.37877 3.42944 3.44494 3.68032 4.39291 4.47441 4.47634 4.57637 4.66283 4.69099 4.78763 4.80068 4.93582 4.94342 5.06085 5.12286 5.14111 5.16570 5.17379 5.20206 5.45080 5.46868 5.52941 5.56909 5.62880 5.69921 5.71603 5.73028 5.76766 5.79212 5.88016 6.11431 6.12614 6.17004 6.19224 6.28824 6.43302 6.48317 6.63432 6.65341 6.68865 6.86928 7.51621 7.56570 7.77758 7.78701 8.20852 8.24690 9.17926 9.77515 10.42963 11.35968 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.001964 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.971654 B =14254.865531 C =16005.999290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.131 4.131 12 C -0.104 4.104 13 C 0.119 3.881 14 N -0.642 5.642 15 C 0.536 3.464 16 O -0.530 6.530 17 C 0.051 3.949 18 O -0.365 6.365 19 C 0.067 3.933 20 C -0.079 4.079 21 C -0.081 4.081 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.119 4.119 26 C -0.114 4.114 27 C 0.126 3.874 28 C 0.162 3.838 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.039 0.961 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -16.197 -16.460 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.170 4.170 12 C -0.106 4.106 13 C -0.003 4.003 14 N -0.379 5.379 15 C 0.324 3.676 16 O -0.406 6.406 17 C -0.029 4.029 18 O -0.283 6.283 19 C -0.010 4.010 20 C -0.116 4.116 21 C -0.081 4.081 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.132 4.132 27 C 0.003 3.997 28 C 0.036 3.964 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.058 0.942 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.216 -16.776 -16.153 24.104 hybrid contribution 0.266 1.225 -0.314 1.292 sum 6.482 -15.551 -16.466 23.558 Atomic orbital electron populations 1.69954 1.04839 1.25044 1.57088 1.24789 0.95732 0.97637 1.02248 0.86128 0.78629 0.83501 0.77552 1.21628 1.21675 1.20710 1.19041 0.90429 0.82328 1.43795 0.90495 1.44563 1.01632 0.99658 1.87308 1.21206 0.84234 0.87926 1.01257 1.22680 0.94626 0.99681 1.00037 1.22465 0.99776 0.93574 0.94767 1.23107 0.95997 0.83644 0.97559 1.50171 1.43876 1.27484 1.16374 1.19815 0.78883 0.81769 0.87107 1.90705 1.54285 1.27481 1.68161 1.22113 0.94368 0.92959 0.93412 1.87962 1.62823 1.48850 1.28647 1.22504 0.97095 0.98356 0.83027 1.20457 0.99662 0.99229 0.92290 1.19749 0.95667 0.97935 0.94780 1.21115 0.99777 0.99969 0.92417 1.21165 0.96950 0.98956 0.96689 1.21186 0.95806 0.98057 0.99152 1.21182 0.99951 0.99796 0.92748 1.21140 0.96499 0.98482 0.97072 1.22998 0.97437 0.95119 0.84098 1.21044 0.93000 0.85398 0.97000 0.93747 0.93473 0.93813 0.91657 0.91704 0.89526 0.89450 0.90424 0.90116 0.92992 0.92844 0.89807 0.89889 0.85917 0.86024 0.86130 0.85966 0.85818 0.89966 0.89700 0.94230 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.30 55.49 0.57 -25.55 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.12 10.28 -15.06 -0.15 -6.28 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.61 3.41 -170.49 -0.58 -15.19 16 10 C 0.18 4.01 5.39 -2.85 -0.02 3.99 16 11 C -0.13 -2.15 6.36 -25.55 -0.16 -2.31 16 12 C -0.10 -1.63 0.99 -154.84 -0.15 -1.78 16 13 C 0.12 1.62 7.92 -3.60 -0.03 1.60 16 14 N -0.64 -9.36 3.62 -186.93 -0.68 -10.03 16 15 C 0.54 8.50 8.13 -10.98 -0.09 8.41 16 16 O -0.53 -10.50 17.22 -14.35 -0.25 -10.74 16 17 C 0.05 0.64 6.16 36.01 0.22 0.86 16 18 O -0.36 -4.92 9.88 -55.14 -0.54 -5.46 16 19 C 0.07 0.66 5.92 37.16 0.22 0.88 16 20 C -0.08 -0.71 5.72 -27.88 -0.16 -0.87 16 21 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 22 C -0.11 -0.91 9.70 -39.58 -0.38 -1.29 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.11 -0.93 9.70 -39.59 -0.38 -1.32 16 27 C 0.13 1.75 8.21 -3.60 -0.03 1.72 16 28 C 0.16 3.17 6.63 -3.16 -0.02 3.15 16 29 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.05 1.17 7.39 -51.93 -0.38 0.78 16 31 H 0.04 1.11 7.49 -51.93 -0.39 0.72 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 34 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.09 1.23 8.12 -51.93 -0.42 0.81 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 40 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 42 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 48 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 49 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 50 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -33.19 411.99 -11.58 -44.78 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.33 Total: -1.98 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.97 Total: 1.40 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.69 Total: -50.77 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.79 Total: -16.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.19 -11.58 -44.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.400 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds