Wall clock time and date at job start Wed Apr 1 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00256 * 2 1 4 4 H 1.48504 * 109.47081 * 270.00691 * 3 2 1 5 5 H 1.48508 * 109.46873 * 30.00144 * 3 2 1 6 6 H 1.48498 * 109.47609 * 150.00080 * 3 2 1 7 7 C 1.38812 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.47137 * 125.58257 * 359.97336 * 9 7 2 11 11 C 1.54607 * 107.36428 * 179.11256 * 10 9 7 12 12 C 1.53658 * 102.73022 * 339.24245 * 11 10 9 13 13 C 1.52376 * 116.38792 * 264.51025 * 12 11 10 14 14 N 1.47887 * 85.58653 * 218.64097 * 13 12 11 15 15 C 1.34781 * 134.34294 * 203.44630 * 14 13 12 16 16 O 1.21274 * 120.00013 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99712 * 0.05480 * 15 14 13 18 18 O 1.42902 * 109.46910 * 179.97438 * 17 15 14 19 19 C 1.42898 * 113.99732 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46710 * 179.97438 * 19 18 17 21 21 C 1.50707 * 109.46757 * 180.02562 * 20 19 18 22 22 C 1.38236 * 120.00075 * 269.72649 * 21 20 19 23 23 C 1.38232 * 120.00088 * 179.76554 * 22 21 20 24 24 C 1.38237 * 119.99987 * 0.51570 * 23 22 21 25 25 C 1.38241 * 119.99834 * 359.73975 * 24 23 22 26 26 C 1.38230 * 120.00025 * 90.00470 * 21 20 19 27 27 C 1.47885 * 91.31801 * 23.48707 * 14 13 12 28 28 C 1.47725 * 125.59073 * 180.02562 * 9 7 2 29 29 H 0.97004 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.87068 * 59.66707 * 10 9 7 31 31 H 1.09000 * 109.98285 * 298.62086 * 10 9 7 32 32 H 1.08993 * 110.75921 * 97.55525 * 11 10 9 33 33 H 1.09003 * 110.75908 * 220.93334 * 11 10 9 34 34 H 1.08995 * 113.85266 * 332.80710 * 13 12 11 35 35 H 1.09002 * 113.85194 * 104.47686 * 13 12 11 36 36 H 1.09001 * 109.47141 * 299.99813 * 17 15 14 37 37 H 1.09005 * 109.47107 * 60.00026 * 17 15 14 38 38 H 1.08994 * 109.47817 * 300.00101 * 19 18 17 39 39 H 1.09008 * 109.46974 * 60.00578 * 19 18 17 40 40 H 1.08999 * 109.47583 * 300.00357 * 20 19 18 41 41 H 1.08995 * 109.47105 * 60.00693 * 20 19 18 42 42 H 1.08007 * 119.99815 * 0.02562 * 22 21 20 43 43 H 1.08004 * 119.99799 * 180.23059 * 23 22 21 44 44 H 1.07995 * 120.00222 * 179.72790 * 24 23 22 45 45 H 1.08001 * 119.99950 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.00060 * 0.02562 * 26 21 20 47 47 H 1.09005 * 113.85578 * 222.34797 * 27 14 13 48 48 H 1.09009 * 113.97216 * 90.69198 * 27 14 13 49 49 H 1.08994 * 110.39981 * 321.21907 * 28 9 7 50 50 H 1.09008 * 110.39351 * 83.62265 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1388 -2.5313 -0.0017 11 6 -0.4544 -4.0446 -0.0259 12 6 0.8476 -4.6534 -0.5691 13 6 0.8958 -4.9220 -2.0682 14 7 1.6270 -6.1560 -1.7079 15 6 2.4868 -6.9653 -2.3577 16 8 2.9445 -7.9387 -1.7976 17 6 2.8799 -6.6602 -3.7802 18 8 3.7942 -7.6550 -4.2455 19 6 4.2315 -7.4584 -5.5916 20 6 5.2018 -8.5754 -5.9809 21 6 5.6635 -8.3677 -7.4004 22 6 4.9607 -8.9365 -8.4461 23 6 5.3814 -8.7419 -9.7484 24 6 6.5110 -7.9873 -10.0044 25 6 7.2168 -7.4228 -8.9584 26 6 6.7930 -7.6130 -7.6564 27 6 1.0385 -6.1493 -0.3512 28 6 1.9361 -3.7333 -0.0017 29 1 -0.4850 0.8401 0.0004 30 1 -0.5579 -2.0513 -0.8860 31 1 -0.5573 -2.0800 0.8979 32 1 -0.6629 -4.4118 0.9789 33 1 -1.2881 -4.2547 -0.6960 34 1 -0.0816 -5.1034 -2.5151 35 1 1.4945 -4.2019 -2.6261 36 1 1.9908 -6.6600 -4.4108 37 1 3.3563 -5.6807 -3.8234 38 1 3.3705 -7.4754 -6.2597 39 1 4.7355 -6.4952 -5.6729 40 1 6.0629 -8.5581 -5.3129 41 1 4.6983 -9.5387 -5.8996 42 1 4.0805 -9.5296 -8.2458 43 1 4.8302 -9.1833 -10.5656 44 1 6.8422 -7.8389 -11.0216 45 1 8.0996 -6.8336 -9.1583 46 1 7.3449 -7.1727 -6.8391 47 1 1.7491 -6.3925 0.4388 48 1 0.1046 -6.7058 -0.2707 49 1 2.8188 -3.7498 -0.6409 50 1 2.1957 -4.0327 1.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148906014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:01 Heat of formation + Delta-G solvation = -9.225167 kcal Electronic energy + Delta-G solvation = -28872.506238 eV Core-core repulsion = 24865.996814 eV Total energy + Delta-G solvation = -4006.509424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80704 -40.31973 -39.82932 -38.45517 -37.18690 -34.43850 -34.10962 -31.77590 -31.69440 -30.61871 -29.66520 -28.33821 -27.38731 -26.92974 -25.10382 -24.39136 -23.46742 -22.11115 -21.88112 -20.60987 -19.57720 -18.81020 -18.21994 -17.90110 -17.54269 -17.37250 -16.88416 -16.66127 -16.51158 -15.98172 -15.87926 -15.85589 -15.54470 -14.97604 -14.82892 -14.28606 -14.21023 -14.03659 -13.91772 -13.82831 -13.68350 -13.59195 -13.37089 -13.20826 -12.84987 -12.77198 -12.43882 -12.41895 -12.35238 -12.02331 -11.96095 -11.92903 -11.82078 -11.71442 -11.64827 -11.28041 -10.75864 -10.74837 -10.64556 -9.82530 -9.74995 -9.65230 -8.86246 -7.82776 -5.17278 0.39780 0.49571 1.47545 1.48341 1.49609 1.53870 1.56940 2.50196 2.63482 2.92827 3.29581 3.38723 3.48239 3.67123 3.75128 3.87176 3.94923 4.09377 4.12987 4.15248 4.17522 4.21060 4.23896 4.27933 4.31249 4.41890 4.44750 4.58840 4.60590 4.64181 4.64376 4.70429 4.78235 4.84858 4.91288 4.94562 4.99408 5.10318 5.14229 5.16964 5.17892 5.24281 5.48312 5.57103 5.63019 5.70192 5.75185 5.84794 6.02251 6.11653 6.23525 6.62071 7.06653 7.14374 7.80302 8.43938 9.26821 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.001964 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.971654 B =14254.865531 C =16005.999290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.624 5.624 10 C 0.184 3.816 11 C -0.112 4.112 12 C -0.099 4.099 13 C 0.127 3.873 14 N -0.641 5.641 15 C 0.530 3.470 16 O -0.578 6.578 17 C 0.054 3.946 18 O -0.393 6.393 19 C 0.066 3.934 20 C -0.074 4.074 21 C -0.092 4.092 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.129 4.129 27 C 0.130 3.870 28 C 0.158 3.842 29 H 0.247 0.753 30 H 0.018 0.982 31 H 0.004 0.996 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.033 0.967 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.495 -17.046 -18.249 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.351 5.351 10 C 0.059 3.941 11 C -0.150 4.150 12 C -0.101 4.101 13 C 0.006 3.994 14 N -0.377 5.377 15 C 0.320 3.680 16 O -0.458 6.458 17 C -0.025 4.025 18 O -0.312 6.312 19 C -0.010 4.010 20 C -0.112 4.112 21 C -0.092 4.092 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.147 4.147 27 C 0.009 3.991 28 C 0.033 3.967 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.093 0.907 48 H 0.135 0.865 49 H 0.052 0.948 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.919 -17.630 -17.950 25.846 hybrid contribution 0.408 1.497 0.259 1.573 sum 6.327 -16.133 -17.691 24.764 Atomic orbital electron populations 1.70160 1.05994 1.25172 1.58213 1.25550 0.96607 1.00643 1.02751 0.85159 0.77571 0.79571 0.77498 1.21140 1.22164 1.19911 1.19364 0.90788 0.83821 1.42945 0.90596 1.44836 1.02660 1.00567 1.87021 1.21006 0.83167 0.91967 0.97958 1.22525 0.95908 0.94679 1.01910 1.22285 0.97418 0.93914 0.96457 1.23220 0.97387 0.82848 0.95948 1.50210 1.43516 1.27379 1.16583 1.20423 0.78245 0.81073 0.88235 1.90679 1.56029 1.29624 1.69497 1.22172 0.95572 0.93068 0.91687 1.87931 1.63289 1.49519 1.30446 1.22641 0.97767 0.98830 0.81722 1.20395 0.99184 0.98952 0.92639 1.19761 0.96203 0.98722 0.94552 1.21320 1.00196 1.00117 0.92663 1.21464 0.97131 0.98787 0.97001 1.21509 0.95632 0.97549 1.00104 1.21448 1.00583 0.99966 0.92573 1.21312 0.96728 0.98854 0.97764 1.23074 0.98629 0.93599 0.83835 1.21139 0.94136 0.84430 0.96967 0.94402 0.96354 0.97785 0.90317 0.88423 0.86084 0.89953 0.87496 0.88948 0.91590 0.92381 0.90594 0.90066 0.84932 0.84108 0.84156 0.84440 0.85470 0.90707 0.86547 0.94822 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.96 10.30 21.65 0.22 -54.74 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 3 Si 0.97 44.91 29.55 68.60 2.03 46.94 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.24 -13.10 10.28 84.03 0.86 -12.24 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -30.45 3.41 -693.31 -2.36 -32.81 16 10 C 0.18 8.32 5.39 86.80 0.47 8.79 16 11 C -0.11 -3.39 6.36 31.36 0.20 -3.19 16 12 C -0.10 -2.88 0.99 -52.15 -0.05 -2.93 16 13 C 0.13 3.08 7.92 85.91 0.68 3.76 16 14 N -0.64 -17.12 3.62 -863.73 -3.12 -20.25 16 15 C 0.53 16.04 8.13 87.66 0.71 16.76 16 16 O -0.58 -22.71 17.22 16.02 0.28 -22.43 16 17 C 0.05 1.25 6.16 71.24 0.44 1.69 16 18 O -0.39 -10.24 9.88 -129.94 -1.28 -11.52 16 19 C 0.07 1.24 5.92 71.98 0.43 1.66 16 20 C -0.07 -1.31 5.72 29.85 0.17 -1.14 16 21 C -0.09 -1.51 5.13 -19.86 -0.10 -1.62 16 22 C -0.13 -1.83 9.70 22.27 0.22 -1.61 16 23 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 24 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 26 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 27 C 0.13 3.28 8.21 85.90 0.71 3.99 16 28 C 0.16 6.15 6.63 86.28 0.57 6.72 16 29 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.02 0.92 7.39 -2.39 -0.02 0.90 16 31 H 0.00 0.20 7.49 -2.39 -0.02 0.19 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 2.38 7.99 -2.39 -0.02 2.36 16 34 H 0.12 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.08 2.12 8.12 -2.39 -0.02 2.10 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 42 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 48 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 49 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 50 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -74.32 411.99 3.31 -71.01 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.90 Total: 12.27 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.65 Total: 11.53 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -5.26 Total: -107.79 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.01 Total: -33.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.32 3.31 -71.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148906014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.782 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds