Wall clock time and date at job start Wed Apr 1 2020 03:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48501 * 109.47029 * 270.00218 * 3 2 1 5 5 H 1.48496 * 109.47523 * 30.00118 * 3 2 1 6 6 H 1.48500 * 109.46983 * 150.00377 * 3 2 1 7 7 C 1.38814 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00067 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47267 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47208 * 174.56288 * 11 10 9 13 13 C 1.46494 * 119.99872 * 262.41902 * 12 11 10 14 14 C 1.53006 * 109.46809 * 270.27410 * 13 12 11 15 15 C 1.50707 * 109.46720 * 180.02562 * 14 13 12 16 16 C 1.38232 * 119.99809 * 269.72044 * 15 14 13 17 17 C 1.38232 * 119.99917 * 179.76797 * 16 15 14 18 18 C 1.38243 * 119.99859 * 0.51039 * 17 16 15 19 19 C 1.38226 * 120.00007 * 359.74720 * 18 17 16 20 20 C 1.38237 * 119.99840 * 90.00139 * 15 14 13 21 21 C 1.34775 * 119.99680 * 82.69031 * 12 11 10 22 22 O 1.21614 * 119.99995 * 173.61442 * 21 12 11 23 23 C 1.47100 * 120.00272 * 353.61871 * 21 12 11 24 24 C 1.32088 * 118.87327 * 239.54244 * 23 21 12 25 25 C 1.50271 * 122.57642 * 180.14289 * 24 23 21 26 26 O 1.42893 * 110.14669 * 344.80971 * 25 24 23 27 27 C 1.43270 * 113.09829 * 50.32644 * 26 25 24 28 28 C 1.50419 * 118.87961 * 59.81775 * 23 21 12 29 29 H 0.96999 * 120.00271 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00053 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47124 * 59.99893 * 10 9 7 32 32 H 1.09000 * 109.47400 * 299.99893 * 10 9 7 33 33 H 1.08996 * 109.47477 * 54.56108 * 11 10 9 34 34 H 1.09008 * 109.47284 * 294.56287 * 11 10 9 35 35 H 1.08995 * 109.47565 * 30.27464 * 13 12 11 36 36 H 1.08997 * 109.47255 * 150.27808 * 13 12 11 37 37 H 1.08999 * 109.47288 * 299.99606 * 14 13 12 38 38 H 1.08994 * 109.47345 * 59.99999 * 14 13 12 39 39 H 1.07999 * 119.99748 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.00233 * 180.23400 * 17 16 15 41 41 H 1.07996 * 119.99827 * 179.72220 * 18 17 16 42 42 H 1.08001 * 120.00601 * 179.97438 * 19 18 17 43 43 H 1.08001 * 120.00202 * 359.97438 * 20 15 14 44 44 H 1.07995 * 118.71723 * 0.37692 * 24 23 21 45 45 H 1.09001 * 109.50292 * 224.49744 * 25 24 23 46 46 H 1.09003 * 109.07440 * 104.84958 * 25 24 23 47 47 H 1.09000 * 109.63641 * 171.47547 * 27 26 25 48 48 H 1.08998 * 109.63781 * 50.86287 * 27 26 25 49 49 H 1.09005 * 109.44693 * 283.35197 * 28 23 21 50 50 H 1.08998 * 109.45479 * 43.28548 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 7 1.7917 -6.0843 -0.1328 13 6 1.9187 -6.7228 -1.4452 14 6 0.7365 -7.6680 -1.6690 15 6 0.8676 -8.3252 -3.0188 16 6 0.3011 -7.7347 -4.1329 17 6 0.4253 -8.3351 -5.3719 18 6 1.1071 -9.5314 -5.4949 19 6 1.6690 -10.1246 -4.3800 20 6 1.5492 -9.5215 -3.1418 21 6 2.3395 -6.6631 0.9541 22 8 2.8420 -7.7672 0.8669 23 6 2.3296 -5.9595 2.2459 24 6 3.4812 -5.6899 2.8341 25 6 3.5680 -4.9784 4.1549 26 8 2.3180 -4.3584 4.4630 27 6 1.2028 -5.2491 4.3377 28 6 1.0084 -5.5772 2.8548 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 2.6856 -3.7148 0.8878 32 1 2.6842 -3.7141 -0.8922 33 1 0.3740 -4.7085 -0.8372 34 1 0.5042 -4.8185 0.9346 35 1 1.9248 -5.9583 -2.2221 36 1 2.8492 -7.2889 -1.4853 37 1 0.7305 -8.4326 -0.8921 38 1 -0.1940 -7.1019 -1.6289 39 1 -0.2350 -6.8022 -4.0360 40 1 -0.0140 -7.8719 -6.2429 41 1 1.2003 -10.0027 -6.4622 42 1 2.2012 -11.0594 -4.4760 43 1 1.9883 -9.9850 -2.2707 44 1 4.3963 -5.9893 2.3451 45 1 4.3470 -4.2175 4.1078 46 1 3.8147 -5.7007 4.9331 47 1 0.3051 -4.7691 4.7273 48 1 1.4019 -6.1658 4.8927 49 1 0.6103 -4.7035 2.3388 50 1 0.3090 -6.4072 2.7552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162780168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:38 Heat of formation + Delta-G solvation = -19.493825 kcal Electronic energy + Delta-G solvation = -30204.069369 eV Core-core repulsion = 26197.114663 eV Total energy + Delta-G solvation = -4006.954706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.48901 -39.40179 -38.66677 -36.34307 -34.72319 -33.88079 -32.93948 -31.23666 -31.14373 -31.00985 -28.97042 -27.52946 -26.07771 -24.37943 -23.72003 -23.50921 -22.69129 -21.71153 -21.16969 -19.97136 -18.44678 -17.37444 -16.99711 -16.81321 -16.45404 -16.18722 -15.57825 -15.29416 -15.16888 -14.90936 -14.88094 -14.45918 -14.24531 -13.68193 -13.60234 -13.46238 -13.28824 -13.22419 -13.09703 -13.01148 -12.73635 -12.58789 -12.37848 -12.16982 -11.57911 -11.36755 -11.36554 -11.20687 -11.15563 -10.92591 -10.85896 -10.83061 -10.61529 -10.13843 -10.10443 -9.76933 -9.41565 -9.05020 -9.04793 -8.98664 -8.84536 -8.46095 -6.96637 -5.78890 -3.08045 1.20326 1.27385 1.65762 2.73740 3.10278 3.43266 3.48886 3.50344 3.66418 3.87295 4.42791 4.61287 4.70025 4.70930 4.72144 4.87482 4.90073 5.00908 5.01527 5.08362 5.17841 5.19893 5.30890 5.32526 5.39284 5.40242 5.43960 5.50383 5.57551 5.59710 5.63013 5.64884 5.74378 5.80382 5.85774 5.95641 5.99850 6.09026 6.12856 6.26232 6.33046 6.37984 6.48323 6.51508 6.53791 6.68478 6.80022 6.88039 7.10239 7.43062 7.68934 8.17204 8.39212 9.50876 10.04869 10.40015 11.43849 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007748 B = 0.003350 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.739201 B = 8355.740008 C =11253.809685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.139 3.861 11 C 0.083 3.917 12 N -0.599 5.599 13 C 0.123 3.877 14 C -0.096 4.096 15 C -0.077 4.077 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.114 4.114 21 C 0.559 3.441 22 O -0.545 6.545 23 C -0.143 4.143 24 C -0.137 4.137 25 C 0.091 3.909 26 O -0.369 6.369 27 C 0.063 3.937 28 C -0.124 4.124 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -19.124 -0.874 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.011 3.989 11 C -0.039 4.039 12 N -0.330 5.330 13 C 0.000 4.000 14 C -0.134 4.134 15 C -0.077 4.077 16 C -0.133 4.133 17 C -0.137 4.137 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.132 4.132 21 C 0.348 3.652 22 O -0.423 6.423 23 C -0.146 4.146 24 C -0.157 4.157 25 C 0.015 3.985 26 O -0.287 6.287 27 C -0.014 4.014 28 C -0.161 4.161 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.128 0.872 46 H 0.084 0.916 47 H 0.120 0.880 48 H 0.071 0.929 49 H 0.125 0.875 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.471 -19.379 -0.871 19.454 hybrid contribution 0.207 0.725 -0.398 0.852 sum 1.678 -18.654 -1.269 18.772 Atomic orbital electron populations 1.69645 1.05072 1.25701 1.57749 1.24711 0.95521 0.97626 1.02862 0.86195 0.78740 0.83818 0.77480 1.21761 1.21716 1.20725 1.19162 0.90972 0.83902 1.42759 0.91278 1.42174 1.05716 0.99697 1.89724 1.20989 0.93828 0.85561 0.98538 1.22326 0.95241 0.82325 1.03993 1.47912 1.54408 1.23297 1.07345 1.21454 0.98548 0.96009 0.83975 1.20982 0.99535 0.99086 0.93825 1.19814 0.97724 0.95120 0.95069 1.21139 0.99864 0.99986 0.92295 1.21158 0.99299 0.95819 0.97470 1.21139 0.98705 0.96126 0.98544 1.21139 0.99948 0.99990 0.92805 1.21128 0.98939 0.95401 0.97739 1.18552 0.77214 0.85130 0.84298 1.90772 1.46456 1.19495 1.85614 1.20693 0.96544 1.01864 0.95489 1.23325 0.97660 0.97159 0.97521 1.21481 0.87540 0.97171 0.92342 1.88216 1.14547 1.36887 1.89037 1.22620 0.90391 0.94031 0.94354 1.21353 0.94302 1.03056 0.97401 0.93494 0.78321 0.95645 0.96314 0.89892 0.89033 0.89954 0.89981 0.90485 0.90589 0.85823 0.86095 0.86328 0.86232 0.85964 0.86046 0.87209 0.91564 0.87997 0.92891 0.87451 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.68 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -17.73 5.60 -59.91 -0.34 -18.06 16 10 C 0.14 2.73 6.44 -4.04 -0.03 2.70 16 11 C 0.08 1.27 5.24 -4.04 -0.02 1.25 16 12 N -0.60 -8.57 2.49 -175.08 -0.44 -9.01 16 13 C 0.12 1.59 5.31 -4.04 -0.02 1.57 16 14 C -0.10 -1.10 5.67 -27.88 -0.16 -1.26 16 15 C -0.08 -0.86 5.13 -104.62 -0.54 -1.40 16 16 C -0.11 -1.22 9.70 -39.59 -0.38 -1.61 16 17 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 18 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.11 -1.23 9.70 -39.58 -0.38 -1.62 16 21 C 0.56 8.65 6.91 -12.67 -0.09 8.57 16 22 O -0.54 -9.64 16.72 5.27 0.09 -9.55 16 23 C -0.14 -2.04 3.96 -103.09 -0.41 -2.44 16 24 C -0.14 -1.84 9.62 -36.44 -0.35 -2.19 16 25 C 0.09 1.09 7.04 35.80 0.25 1.34 16 26 O -0.37 -5.31 10.83 -35.23 -0.38 -5.69 16 27 C 0.06 0.74 6.88 37.22 0.26 0.99 16 28 C -0.12 -1.57 5.10 -27.96 -0.14 -1.71 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.38 9.64 7.67 -40.82 -0.31 9.32 16 31 H 0.03 0.53 7.16 -51.93 -0.37 0.15 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 34 H 0.09 1.34 3.88 -51.92 -0.20 1.14 16 35 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 36 H 0.08 1.13 7.51 -51.93 -0.39 0.74 16 37 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.57 7.99 -52.49 -0.42 1.15 16 45 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 49 H 0.11 1.52 5.49 -51.93 -0.29 1.23 16 50 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -32.89 409.11 -10.50 -43.39 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.85 Total: 9.96 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.45 Total: -7.61 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.05 Total: -53.89 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.29 Total: -15.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.89 -10.50 -43.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162780168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.899 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds