Wall clock time and date at job start Wed Apr 1 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99739 * 2 1 4 4 H 1.48501 * 109.47029 * 270.00218 * 3 2 1 5 5 H 1.48496 * 109.47523 * 30.00118 * 3 2 1 6 6 H 1.48500 * 109.46983 * 150.00377 * 3 2 1 7 7 C 1.38814 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00148 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99759 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00067 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47267 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47208 * 174.56288 * 11 10 9 13 13 C 1.46494 * 119.99872 * 262.41902 * 12 11 10 14 14 C 1.53006 * 109.46809 * 270.27410 * 13 12 11 15 15 C 1.50707 * 109.46720 * 180.02562 * 14 13 12 16 16 C 1.38232 * 119.99809 * 269.72044 * 15 14 13 17 17 C 1.38232 * 119.99917 * 179.76797 * 16 15 14 18 18 C 1.38243 * 119.99859 * 0.51039 * 17 16 15 19 19 C 1.38226 * 120.00007 * 359.74720 * 18 17 16 20 20 C 1.38237 * 119.99840 * 90.00139 * 15 14 13 21 21 C 1.34775 * 119.99680 * 82.69031 * 12 11 10 22 22 O 1.21614 * 119.99995 * 173.61442 * 21 12 11 23 23 C 1.47100 * 120.00272 * 353.61871 * 21 12 11 24 24 C 1.32088 * 118.87327 * 239.54244 * 23 21 12 25 25 C 1.50271 * 122.57642 * 180.14289 * 24 23 21 26 26 O 1.42893 * 110.14669 * 344.80971 * 25 24 23 27 27 C 1.43270 * 113.09829 * 50.32644 * 26 25 24 28 28 C 1.50419 * 118.87961 * 59.81775 * 23 21 12 29 29 H 0.96999 * 120.00271 * 359.97438 * 1 2 3 30 30 H 0.97005 * 120.00053 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47124 * 59.99893 * 10 9 7 32 32 H 1.09000 * 109.47400 * 299.99893 * 10 9 7 33 33 H 1.08996 * 109.47477 * 54.56108 * 11 10 9 34 34 H 1.09008 * 109.47284 * 294.56287 * 11 10 9 35 35 H 1.08995 * 109.47565 * 30.27464 * 13 12 11 36 36 H 1.08997 * 109.47255 * 150.27808 * 13 12 11 37 37 H 1.08999 * 109.47288 * 299.99606 * 14 13 12 38 38 H 1.08994 * 109.47345 * 59.99999 * 14 13 12 39 39 H 1.07999 * 119.99748 * 0.02562 * 16 15 14 40 40 H 1.07999 * 120.00233 * 180.23400 * 17 16 15 41 41 H 1.07996 * 119.99827 * 179.72220 * 18 17 16 42 42 H 1.08001 * 120.00601 * 179.97438 * 19 18 17 43 43 H 1.08001 * 120.00202 * 359.97438 * 20 15 14 44 44 H 1.07995 * 118.71723 * 0.37692 * 24 23 21 45 45 H 1.09001 * 109.50292 * 224.49744 * 25 24 23 46 46 H 1.09003 * 109.07440 * 104.84958 * 25 24 23 47 47 H 1.09000 * 109.63641 * 171.47547 * 27 26 25 48 48 H 1.08998 * 109.63781 * 50.86287 * 27 26 25 49 49 H 1.09005 * 109.44693 * 283.35197 * 28 23 21 50 50 H 1.08998 * 109.45479 * 43.28548 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 7 1.7917 -6.0843 -0.1328 13 6 1.9187 -6.7228 -1.4452 14 6 0.7365 -7.6680 -1.6690 15 6 0.8676 -8.3252 -3.0188 16 6 0.3011 -7.7347 -4.1329 17 6 0.4253 -8.3351 -5.3719 18 6 1.1071 -9.5314 -5.4949 19 6 1.6690 -10.1246 -4.3800 20 6 1.5492 -9.5215 -3.1418 21 6 2.3395 -6.6631 0.9541 22 8 2.8420 -7.7672 0.8669 23 6 2.3296 -5.9595 2.2459 24 6 3.4812 -5.6899 2.8341 25 6 3.5680 -4.9784 4.1549 26 8 2.3180 -4.3584 4.4630 27 6 1.2028 -5.2491 4.3377 28 6 1.0084 -5.5772 2.8548 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 0.0002 31 1 2.6856 -3.7148 0.8878 32 1 2.6842 -3.7141 -0.8922 33 1 0.3740 -4.7085 -0.8372 34 1 0.5042 -4.8185 0.9346 35 1 1.9248 -5.9583 -2.2221 36 1 2.8492 -7.2889 -1.4853 37 1 0.7305 -8.4326 -0.8921 38 1 -0.1940 -7.1019 -1.6289 39 1 -0.2350 -6.8022 -4.0360 40 1 -0.0140 -7.8719 -6.2429 41 1 1.2003 -10.0027 -6.4622 42 1 2.2012 -11.0594 -4.4760 43 1 1.9883 -9.9850 -2.2707 44 1 4.3963 -5.9893 2.3451 45 1 4.3470 -4.2175 4.1078 46 1 3.8147 -5.7007 4.9331 47 1 0.3051 -4.7691 4.7273 48 1 1.4019 -6.1658 4.8927 49 1 0.6103 -4.7035 2.3388 50 1 0.3090 -6.4072 2.7552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162780168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:37 Heat of formation + Delta-G solvation = -37.881744 kcal Electronic energy + Delta-G solvation = -30204.866729 eV Core-core repulsion = 26197.114663 eV Total energy + Delta-G solvation = -4007.752066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.64678 -40.21776 -39.69299 -37.73215 -36.25028 -35.13613 -34.02909 -33.02022 -32.13975 -31.76994 -30.13025 -28.98801 -27.11466 -25.75669 -25.19444 -24.47164 -23.48515 -23.34471 -22.01687 -21.09629 -19.71612 -19.05890 -18.06803 -17.90053 -17.58824 -17.22433 -16.78091 -16.41009 -16.13083 -16.06822 -16.01879 -15.72353 -15.58953 -15.15838 -15.06007 -14.61461 -14.43485 -14.38098 -14.12611 -14.07333 -13.71702 -13.64602 -13.52341 -13.17700 -13.01338 -12.83856 -12.73529 -12.52447 -12.43789 -12.18493 -12.10642 -11.99490 -11.83805 -11.77237 -11.71654 -11.20457 -10.96735 -10.47313 -10.06395 -9.99355 -9.82347 -9.49752 -9.00162 -7.93979 -5.22778 0.40315 0.49837 0.57567 1.48809 1.49935 1.53319 1.58597 1.93455 2.57773 2.87356 2.92957 3.33621 3.40132 3.68789 3.82889 3.84949 3.92713 3.96933 4.05526 4.11581 4.17016 4.21601 4.25725 4.26536 4.30733 4.34212 4.42648 4.48822 4.50220 4.55140 4.57339 4.64484 4.69422 4.76626 4.86078 4.90607 4.91354 5.03641 5.14785 5.17952 5.18112 5.25384 5.43040 5.49938 5.51201 5.58692 5.62682 5.71831 6.12415 6.15741 6.20926 6.28476 6.95358 7.35535 8.06026 8.32244 9.28811 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007748 B = 0.003350 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.739201 B = 8355.740008 C =11253.809685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.146 3.854 11 C 0.098 3.902 12 N -0.593 5.593 13 C 0.123 3.877 14 C -0.083 4.083 15 C -0.091 4.091 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.126 4.126 20 C -0.129 4.129 21 C 0.558 3.442 22 O -0.571 6.571 23 C -0.163 4.163 24 C -0.135 4.135 25 C 0.089 3.911 26 O -0.397 6.397 27 C 0.060 3.940 28 C -0.120 4.120 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.018 0.982 32 H 0.011 0.989 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.129 0.871 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.073 0.927 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -19.706 -1.126 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.379 5.379 10 C 0.019 3.981 11 C -0.025 4.025 12 N -0.324 5.324 13 C 0.001 3.999 14 C -0.121 4.121 15 C -0.091 4.091 16 C -0.145 4.145 17 C -0.144 4.144 18 C -0.147 4.147 19 C -0.144 4.144 20 C -0.147 4.147 21 C 0.348 3.652 22 O -0.451 6.451 23 C -0.166 4.166 24 C -0.154 4.154 25 C 0.013 3.987 26 O -0.315 6.315 27 C -0.016 4.016 28 C -0.157 4.157 29 H 0.061 0.939 30 H 0.210 0.790 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.135 0.865 46 H 0.112 0.888 47 H 0.132 0.868 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.728 -19.987 -1.132 20.093 hybrid contribution 0.208 0.827 -0.358 0.925 sum 1.936 -19.159 -1.489 19.314 Atomic orbital electron populations 1.69777 1.06302 1.26111 1.59130 1.25445 0.96361 1.00656 1.03421 0.85236 0.77786 0.79919 0.77395 1.21438 1.21977 1.19807 1.19473 0.91192 0.85230 1.41656 0.91365 1.42271 1.05608 1.00532 1.89503 1.20996 0.94308 0.85306 0.97522 1.22124 0.94137 0.81080 1.05138 1.47896 1.54008 1.22708 1.07752 1.21513 0.98847 0.96196 0.83323 1.20816 0.98943 0.98393 0.93966 1.19828 0.98706 0.95623 0.94976 1.21303 1.00142 1.00425 0.92626 1.21462 0.99150 0.96051 0.97735 1.21484 0.97811 0.95903 0.99507 1.21426 0.99832 1.00690 0.92430 1.21253 0.99374 0.95646 0.98428 1.18812 0.76626 0.84834 0.84902 1.90754 1.47630 1.20637 1.86091 1.20806 0.97656 1.02840 0.95262 1.23573 0.97453 0.96341 0.98066 1.21668 0.87050 0.97828 0.92181 1.88174 1.15748 1.38471 1.89146 1.22790 0.90249 0.94712 0.93840 1.21331 0.93724 1.02798 0.97851 0.93889 0.78951 0.96389 0.97073 0.88874 0.87941 0.89617 0.91055 0.91572 0.89974 0.85293 0.84222 0.83902 0.84282 0.86198 0.86056 0.86484 0.88802 0.86825 0.90877 0.89194 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.03 13.06 21.65 0.28 -56.75 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.74 -35.87 5.60 -343.45 -1.92 -37.80 16 10 C 0.15 5.72 6.44 86.38 0.56 6.27 16 11 C 0.10 2.94 5.24 86.38 0.45 3.40 16 12 N -0.59 -16.89 2.49 -826.09 -2.06 -18.95 16 13 C 0.12 3.20 5.31 86.38 0.46 3.66 16 14 C -0.08 -1.90 5.67 29.85 0.17 -1.73 16 15 C -0.09 -2.01 5.13 -19.86 -0.10 -2.11 16 16 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 17 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 18 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 19 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 20 C -0.13 -2.75 9.70 22.27 0.22 -2.54 16 21 C 0.56 17.21 6.91 86.57 0.60 17.81 16 22 O -0.57 -20.30 16.72 -4.07 -0.07 -20.37 16 23 C -0.16 -4.54 3.96 -18.59 -0.07 -4.62 16 24 C -0.13 -3.52 9.62 24.59 0.24 -3.28 16 25 C 0.09 1.99 7.04 71.10 0.50 2.49 16 26 O -0.40 -10.94 10.83 -148.98 -1.61 -12.56 16 27 C 0.06 1.32 6.88 72.02 0.50 1.82 16 28 C -0.12 -2.92 5.10 29.80 0.15 -2.77 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.38 19.11 7.67 -92.70 -0.71 18.40 16 31 H 0.02 0.74 7.16 -2.39 -0.02 0.73 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 2.65 8.01 -2.39 -0.02 2.63 16 34 H 0.10 2.95 3.88 -2.38 -0.01 2.94 16 35 H 0.09 2.15 8.07 -2.39 -0.02 2.13 16 36 H 0.07 2.01 7.51 -2.39 -0.02 2.00 16 37 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 38 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 39 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.12 3.10 7.99 -2.91 -0.02 3.07 16 45 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 49 H 0.09 2.50 5.49 -2.38 -0.01 2.49 16 50 H 0.10 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.47 409.11 2.72 -66.75 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: 0.22 Total: 37.89 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.85 Total: -5.81 kcal Atomic # 7 Polarization: -109.80 SS G_CDS: -3.70 Total: -113.50 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.68 Total: -32.93 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.47 2.72 -66.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162780168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.864 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds