Wall clock time and date at job start Wed Apr 1 2020 03:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.46741 * 270.00186 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47379 * 150.00181 * 3 2 1 7 7 C 1.38816 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99438 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99678 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47106 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47288 * 179.97438 * 11 10 9 13 13 C 1.46503 * 120.00360 * 270.00290 * 12 11 10 14 14 C 1.52999 * 109.47049 * 269.99831 * 13 12 11 15 15 C 1.50701 * 109.47058 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.00071 * 269.72867 * 15 14 13 17 17 C 1.38241 * 119.99969 * 179.74270 * 16 15 14 18 18 C 1.38237 * 119.99700 * 0.55392 * 17 16 15 19 19 C 1.38243 * 119.99912 * 359.69866 * 18 17 16 20 20 C 1.38233 * 119.99891 * 0.02562 * 19 18 17 21 21 C 1.34784 * 120.00007 * 89.99906 * 12 11 10 22 22 O 1.21283 * 119.99831 * 0.02562 * 21 12 11 23 23 C 1.50692 * 120.00191 * 180.02562 * 21 12 11 24 24 H 1.09007 * 115.51013 * 325.37133 * 23 21 12 25 25 C 1.53002 * 117.38925 * 110.66994 * 23 21 12 26 26 H 1.09004 * 119.80278 * 355.38762 * 25 23 21 27 27 C 1.54477 * 118.07022 * 198.10438 * 25 23 21 28 28 O 1.44688 * 104.83958 * 321.13174 * 27 25 23 29 29 C 1.44428 * 105.13885 * 319.51776 * 28 27 25 30 30 C 1.52998 * 117.43397 * 180.02562 * 23 21 12 31 31 H 1.08998 * 119.81072 * 5.71131 * 30 23 21 32 32 H 0.96991 * 119.99817 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00165 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.46769 * 59.99754 * 10 9 7 35 35 H 1.09003 * 109.46994 * 299.99915 * 10 9 7 36 36 H 1.09004 * 109.47174 * 59.99805 * 11 10 9 37 37 H 1.09000 * 109.47540 * 300.00467 * 11 10 9 38 38 H 1.08998 * 109.46678 * 29.99674 * 13 12 11 39 39 H 1.08998 * 109.47043 * 149.99813 * 13 12 11 40 40 H 1.08997 * 109.47148 * 300.00037 * 14 13 12 41 41 H 1.09005 * 109.46960 * 59.99814 * 14 13 12 42 42 H 1.07999 * 120.00188 * 359.97438 * 16 15 14 43 43 H 1.07990 * 120.00293 * 180.27172 * 17 16 15 44 44 H 1.07999 * 120.00112 * 179.72244 * 18 17 16 45 45 H 1.07995 * 119.99591 * 180.02562 * 19 18 17 46 46 H 1.08003 * 119.99825 * 179.97438 * 20 19 18 47 47 H 1.08996 * 110.37125 * 79.96036 * 27 25 23 48 48 H 1.08999 * 110.37542 * 202.30024 * 27 25 23 49 49 H 1.09002 * 110.37130 * 281.60836 * 29 28 27 50 50 H 1.08999 * 110.37385 * 159.38239 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8198 0.0012 12 7 1.7964 -6.0884 0.0006 13 6 2.1619 -6.7228 -1.2684 14 6 1.0398 -7.6648 -1.7094 15 6 1.4155 -8.3169 -3.0151 16 6 1.0638 -7.7208 -4.2117 17 6 1.4130 -8.3162 -5.4094 18 6 2.1039 -9.5135 -5.4104 19 6 2.4510 -10.1123 -4.2137 20 6 2.1068 -9.5139 -3.0161 21 6 2.1343 -6.6721 1.1675 22 8 1.8314 -6.1472 2.2181 23 6 2.8882 -7.9769 1.1670 24 1 2.6386 -8.6629 0.3575 25 6 4.3412 -7.9504 1.6457 26 1 4.8115 -6.9998 1.8973 27 6 5.2533 -9.1380 1.2662 28 8 4.4080 -10.3065 1.3826 29 6 3.6195 -10.0846 2.5721 30 6 3.2411 -8.5877 2.5246 31 1 2.8668 -8.1281 3.4393 32 1 -0.4849 0.8400 -0.0004 33 1 0.3557 -2.3881 0.0005 34 1 2.6849 -3.7145 0.8906 35 1 2.6848 -3.7145 -0.8895 36 1 0.4369 -4.7622 -0.8886 37 1 0.4376 -4.7618 0.8913 38 1 2.3117 -5.9556 -2.0281 39 1 3.0831 -7.2906 -1.1387 40 1 0.8899 -8.4319 -0.9497 41 1 0.1185 -7.0969 -1.8391 42 1 0.5194 -6.7880 -4.2109 43 1 1.1421 -7.8483 -6.3442 44 1 2.3728 -9.9810 -6.3461 45 1 2.9911 -11.0475 -4.2146 46 1 2.3776 -9.9819 -2.0812 47 1 5.6112 -9.0294 0.2424 48 1 6.0933 -9.2073 1.9573 49 1 4.2089 -10.2991 3.4636 50 1 2.7222 -10.7032 2.5535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162897889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:45 Heat of formation + Delta-G solvation = -8.098288 kcal Electronic energy + Delta-G solvation = -29940.249044 eV Core-core repulsion = 25933.788485 eV Total energy + Delta-G solvation = -4006.460559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04742 -39.64181 -39.09714 -36.33473 -34.87117 -34.41911 -33.03467 -31.31253 -31.06928 -29.03282 -28.91801 -27.96498 -26.29873 -24.10390 -23.84882 -22.76120 -22.08316 -21.33737 -20.95983 -20.76927 -18.93107 -17.69988 -17.18031 -16.97113 -16.33676 -16.17705 -15.78953 -15.46391 -15.35404 -15.20331 -14.84904 -14.48776 -14.03353 -13.76131 -13.69927 -13.53570 -13.30751 -13.23883 -13.17737 -12.96358 -12.89896 -12.59168 -12.25799 -12.02087 -11.86192 -11.46727 -11.37503 -11.18864 -11.01442 -10.98443 -10.89182 -10.68432 -10.55489 -10.48717 -10.11231 -9.99426 -9.78809 -9.64075 -9.10597 -9.03960 -8.86835 -8.47317 -6.92837 -5.75651 -3.04879 1.14210 1.21630 2.38739 2.85897 3.38960 3.44556 3.49524 3.51673 3.56760 3.62456 4.18807 4.35332 4.48994 4.57890 4.59223 4.60586 4.64579 4.81282 4.83357 4.89295 4.98847 5.06494 5.06798 5.10683 5.26668 5.28871 5.32557 5.35436 5.38663 5.41515 5.50545 5.58795 5.62865 5.66160 5.74054 5.79306 5.82297 5.87789 5.97564 6.03985 6.12694 6.27803 6.33108 6.36492 6.43852 6.55213 6.73666 6.81787 6.89942 7.45818 7.70807 8.23893 8.42884 9.53807 10.09794 10.44943 11.47278 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007759 B = 0.003087 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.741513 B = 9067.520304 C =11849.931785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.144 3.856 11 C 0.108 3.892 12 N -0.601 5.601 13 C 0.115 3.885 14 C -0.101 4.101 15 C -0.078 4.078 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.115 4.115 21 C 0.543 3.457 22 O -0.529 6.529 23 C -0.142 4.142 24 H 0.125 0.875 25 C -0.174 4.174 26 H 0.131 0.869 27 C 0.073 3.927 28 O -0.374 6.374 29 C 0.072 3.928 30 C -0.168 4.168 31 H 0.137 0.863 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -26.281 -5.219 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.015 3.985 11 C -0.015 4.015 12 N -0.332 5.332 13 C -0.008 4.008 14 C -0.140 4.140 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.133 4.133 21 C 0.330 3.670 22 O -0.405 6.405 23 C -0.164 4.164 24 H 0.143 0.857 25 C -0.193 4.193 26 H 0.148 0.852 27 C -0.004 4.004 28 O -0.293 6.293 29 C -0.005 4.005 30 C -0.187 4.187 31 H 0.155 0.845 32 H 0.065 0.935 33 H 0.217 0.783 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.730 -26.045 -4.775 27.322 hybrid contribution 0.123 1.219 -0.049 1.226 sum 6.853 -24.827 -4.824 26.203 Atomic orbital electron populations 1.69657 1.05103 1.25689 1.57738 1.24745 0.95552 0.97689 1.02956 0.86168 0.78676 0.83742 0.77494 1.21690 1.21711 1.20751 1.19199 0.90999 0.83981 1.42745 0.91231 1.42206 1.05849 0.99779 1.89651 1.20894 0.93859 0.85650 0.98066 1.21732 0.94803 0.81601 1.03323 1.47798 1.57053 1.23012 1.05379 1.21611 0.96976 0.96463 0.85787 1.21085 0.99805 0.98970 0.94096 1.19777 0.98284 0.95169 0.94675 1.21153 1.00030 1.00005 0.91964 1.21172 0.98592 0.95796 0.98082 1.21158 0.99176 0.96040 0.98041 1.21137 1.00120 0.99963 0.92545 1.21083 0.98626 0.95358 0.98253 1.19453 0.79220 0.84692 0.83613 1.90738 1.54192 1.64610 1.30976 1.22131 0.97080 0.97496 0.99647 0.85687 1.24036 0.89312 1.01262 1.04683 0.85162 1.23007 0.92440 0.82181 1.02729 1.89215 1.54769 1.40484 1.44814 1.22975 0.95448 0.93370 0.88711 1.24031 1.03118 0.95656 0.95907 0.84547 0.93478 0.78261 0.96041 0.96424 0.90396 0.89636 0.89507 0.90051 0.90695 0.90131 0.85777 0.86086 0.86319 0.86192 0.86011 0.88387 0.90734 0.90817 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.79 29.55 -169.99 -5.02 17.77 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.13 5.60 -59.90 -0.34 -19.47 16 10 C 0.14 3.05 6.58 -4.04 -0.03 3.03 16 11 C 0.11 1.84 5.52 -4.05 -0.02 1.82 16 12 N -0.60 -8.40 2.47 -173.69 -0.43 -8.83 16 13 C 0.12 1.23 5.02 -4.04 -0.02 1.21 16 14 C -0.10 -0.96 5.56 -27.88 -0.15 -1.11 16 15 C -0.08 -0.73 5.13 -104.63 -0.54 -1.27 16 16 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 17 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 18 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 19 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 20 C -0.12 -1.01 9.70 -39.59 -0.38 -1.39 16 21 C 0.54 8.09 7.45 -10.99 -0.08 8.00 16 22 O -0.53 -10.11 15.92 5.56 0.09 -10.03 16 23 C -0.14 -1.57 4.16 -91.78 -0.38 -1.96 16 24 H 0.13 1.21 6.41 -51.92 -0.33 0.88 16 25 C -0.17 -1.70 6.95 -89.03 -0.62 -2.32 16 26 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 27 C 0.07 0.58 7.54 37.93 0.29 0.86 16 28 O -0.37 -3.52 11.34 -35.23 -0.40 -3.92 16 29 C 0.07 0.58 7.52 37.93 0.29 0.86 16 30 C -0.17 -1.70 6.69 -89.03 -0.60 -2.30 16 31 H 0.14 1.53 7.82 -51.93 -0.41 1.12 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.38 10.43 7.67 -40.82 -0.31 10.11 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 38 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.08 0.78 6.64 -51.93 -0.35 0.43 16 40 H 0.07 0.68 7.39 -51.93 -0.38 0.30 16 41 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 413.43 15.07 6.23 6.23 Total: -1.00 -34.42 413.43 -11.26 -45.68 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.04 Total: 8.26 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -4.07 Total: -7.79 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.04 Total: -56.21 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.42 -11.26 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162897889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.583 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds