Wall clock time and date at job start Wed Apr 1 2020 03:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.46741 * 270.00186 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.99556 * 3 2 1 6 6 H 1.48495 * 109.47379 * 150.00181 * 3 2 1 7 7 C 1.38816 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00398 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99438 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99678 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47106 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47288 * 179.97438 * 11 10 9 13 13 C 1.46503 * 120.00360 * 270.00290 * 12 11 10 14 14 C 1.52999 * 109.47049 * 269.99831 * 13 12 11 15 15 C 1.50701 * 109.47058 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.00071 * 269.72867 * 15 14 13 17 17 C 1.38241 * 119.99969 * 179.74270 * 16 15 14 18 18 C 1.38237 * 119.99700 * 0.55392 * 17 16 15 19 19 C 1.38243 * 119.99912 * 359.69866 * 18 17 16 20 20 C 1.38233 * 119.99891 * 0.02562 * 19 18 17 21 21 C 1.34784 * 120.00007 * 89.99906 * 12 11 10 22 22 O 1.21283 * 119.99831 * 0.02562 * 21 12 11 23 23 C 1.50692 * 120.00191 * 180.02562 * 21 12 11 24 24 H 1.09007 * 115.51013 * 325.37133 * 23 21 12 25 25 C 1.53002 * 117.38925 * 110.66994 * 23 21 12 26 26 H 1.09004 * 119.80278 * 355.38762 * 25 23 21 27 27 C 1.54477 * 118.07022 * 198.10438 * 25 23 21 28 28 O 1.44688 * 104.83958 * 321.13174 * 27 25 23 29 29 C 1.44428 * 105.13885 * 319.51776 * 28 27 25 30 30 C 1.52998 * 117.43397 * 180.02562 * 23 21 12 31 31 H 1.08998 * 119.81072 * 5.71131 * 30 23 21 32 32 H 0.96991 * 119.99817 * 0.02562 * 1 2 3 33 33 H 0.96993 * 120.00165 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.46769 * 59.99754 * 10 9 7 35 35 H 1.09003 * 109.46994 * 299.99915 * 10 9 7 36 36 H 1.09004 * 109.47174 * 59.99805 * 11 10 9 37 37 H 1.09000 * 109.47540 * 300.00467 * 11 10 9 38 38 H 1.08998 * 109.46678 * 29.99674 * 13 12 11 39 39 H 1.08998 * 109.47043 * 149.99813 * 13 12 11 40 40 H 1.08997 * 109.47148 * 300.00037 * 14 13 12 41 41 H 1.09005 * 109.46960 * 59.99814 * 14 13 12 42 42 H 1.07999 * 120.00188 * 359.97438 * 16 15 14 43 43 H 1.07990 * 120.00293 * 180.27172 * 17 16 15 44 44 H 1.07999 * 120.00112 * 179.72244 * 18 17 16 45 45 H 1.07995 * 119.99591 * 180.02562 * 19 18 17 46 46 H 1.08003 * 119.99825 * 179.97438 * 20 19 18 47 47 H 1.08996 * 110.37125 * 79.96036 * 27 25 23 48 48 H 1.08999 * 110.37542 * 202.30024 * 27 25 23 49 49 H 1.09002 * 110.37130 * 281.60836 * 29 28 27 50 50 H 1.08999 * 110.37385 * 159.38239 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8198 0.0012 12 7 1.7964 -6.0884 0.0006 13 6 2.1619 -6.7228 -1.2684 14 6 1.0398 -7.6648 -1.7094 15 6 1.4155 -8.3169 -3.0151 16 6 1.0638 -7.7208 -4.2117 17 6 1.4130 -8.3162 -5.4094 18 6 2.1039 -9.5135 -5.4104 19 6 2.4510 -10.1123 -4.2137 20 6 2.1068 -9.5139 -3.0161 21 6 2.1343 -6.6721 1.1675 22 8 1.8314 -6.1472 2.2181 23 6 2.8882 -7.9769 1.1670 24 1 2.6386 -8.6629 0.3575 25 6 4.3412 -7.9504 1.6457 26 1 4.8115 -6.9998 1.8973 27 6 5.2533 -9.1380 1.2662 28 8 4.4080 -10.3065 1.3826 29 6 3.6195 -10.0846 2.5721 30 6 3.2411 -8.5877 2.5246 31 1 2.8668 -8.1281 3.4393 32 1 -0.4849 0.8400 -0.0004 33 1 0.3557 -2.3881 0.0005 34 1 2.6849 -3.7145 0.8906 35 1 2.6848 -3.7145 -0.8895 36 1 0.4369 -4.7622 -0.8886 37 1 0.4376 -4.7618 0.8913 38 1 2.3117 -5.9556 -2.0281 39 1 3.0831 -7.2906 -1.1387 40 1 0.8899 -8.4319 -0.9497 41 1 0.1185 -7.0969 -1.8391 42 1 0.5194 -6.7880 -4.2109 43 1 1.1421 -7.8483 -6.3442 44 1 2.3728 -9.9810 -6.3461 45 1 2.9911 -11.0475 -4.2146 46 1 2.3776 -9.9819 -2.0812 47 1 5.6112 -9.0294 0.2424 48 1 6.0933 -9.2073 1.9573 49 1 4.2089 -10.2991 3.4636 50 1 2.7222 -10.7032 2.5535 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162897889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:44 Heat of formation + Delta-G solvation = -28.053427 kcal Electronic energy + Delta-G solvation = -29941.114363 eV Core-core repulsion = 25933.788485 eV Total energy + Delta-G solvation = -4007.325878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95317 -40.46222 -39.96493 -37.63488 -36.49510 -35.38330 -34.16731 -33.12504 -31.69980 -30.29758 -29.66219 -29.03938 -27.41825 -25.65810 -24.91156 -23.66092 -23.38105 -22.32359 -21.72437 -21.67084 -20.02619 -19.26843 -18.63523 -17.69525 -17.42345 -17.02446 -16.80017 -16.43091 -16.26687 -16.08097 -15.97065 -15.76904 -15.26774 -15.24195 -15.16324 -14.64042 -14.55661 -14.28238 -14.08689 -13.99532 -13.58492 -13.49978 -13.20424 -13.06279 -12.89965 -12.81924 -12.71330 -12.56425 -12.40156 -12.22292 -12.15591 -11.91284 -11.85834 -11.71102 -11.40714 -11.22938 -11.00815 -10.96274 -10.58446 -10.00029 -9.75041 -9.44995 -9.09630 -8.00075 -5.31171 0.48213 0.57146 1.29127 1.44608 1.47327 1.55758 1.74506 2.51695 2.53246 2.85459 2.95043 3.32959 3.38488 3.56178 3.64266 3.81762 3.84639 3.88652 4.02671 4.03634 4.12252 4.13790 4.18973 4.24097 4.30500 4.35711 4.37734 4.49744 4.52511 4.53532 4.60872 4.70485 4.70731 4.78339 4.83594 4.87350 4.87810 4.93889 5.01096 5.03207 5.06633 5.23528 5.25384 5.39344 5.47781 5.64923 5.70287 5.72976 5.77589 6.18989 6.21162 6.29581 7.05010 7.27502 7.98335 8.24237 9.23256 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007759 B = 0.003087 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.741513 B = 9067.520304 C =11849.931785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.978 3.022 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.123 3.877 12 N -0.596 5.596 13 C 0.116 3.884 14 C -0.091 4.091 15 C -0.087 4.087 16 C -0.131 4.131 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.120 4.120 21 C 0.538 3.462 22 O -0.581 6.581 23 C -0.145 4.145 24 H 0.145 0.855 25 C -0.169 4.169 26 H 0.120 0.880 27 C 0.078 3.922 28 O -0.385 6.385 29 C 0.078 3.922 30 C -0.172 4.172 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.376 0.624 34 H -0.001 1.001 35 H 0.029 0.971 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.113 0.887 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -28.269 -6.346 30.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.384 4.384 8 H 0.090 0.910 9 N -0.386 5.386 10 C 0.023 3.977 11 C -0.001 4.001 12 N -0.327 5.327 13 C -0.006 4.006 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.149 4.149 17 C -0.148 4.148 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.138 4.138 21 C 0.327 3.673 22 O -0.460 6.460 23 C -0.165 4.165 24 H 0.162 0.838 25 C -0.188 4.188 26 H 0.138 0.862 27 C 0.002 3.998 28 O -0.304 6.304 29 C 0.001 3.999 30 C -0.191 4.191 31 H 0.137 0.863 32 H 0.063 0.937 33 H 0.208 0.792 34 H 0.017 0.983 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.140 0.860 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.153 0.847 47 H 0.131 0.869 48 H 0.110 0.890 49 H 0.109 0.891 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.610 -28.083 -5.937 29.967 hybrid contribution -0.431 1.790 0.288 1.863 sum 8.179 -26.293 -5.649 28.110 Atomic orbital electron populations 1.69813 1.06625 1.26365 1.58906 1.25622 0.96497 1.01210 1.03081 0.85090 0.77575 0.79046 0.77728 1.20747 1.21894 1.19670 1.19576 0.91391 0.85203 1.42208 0.90953 1.42381 1.05675 1.00921 1.89597 1.20918 0.94269 0.85317 0.97146 1.21351 0.93860 0.81905 1.02974 1.47831 1.56326 1.21783 1.06720 1.21797 0.98300 0.96620 0.83900 1.20945 0.98779 0.98635 0.94556 1.19755 0.99075 0.95747 0.94211 1.21287 1.00656 1.00333 0.92592 1.21403 0.98747 0.96276 0.98329 1.21467 0.98564 0.95764 0.99100 1.21443 0.99865 1.00646 0.92287 1.21281 0.98299 0.95041 0.99179 1.20169 0.78588 0.85653 0.82850 1.90711 1.56245 1.66305 1.32773 1.22014 0.97779 0.95616 1.01136 0.83776 1.24119 0.88986 1.01728 1.03917 0.86245 1.23124 0.92017 0.80529 1.04141 1.89207 1.55066 1.40822 1.45264 1.23055 0.96130 0.91590 0.89108 1.24087 1.02958 0.97364 0.94674 0.86272 0.93738 0.79215 0.98265 0.95342 0.88713 0.91971 0.89811 0.88218 0.90086 0.90956 0.86029 0.84951 0.84387 0.84170 0.84714 0.86883 0.89023 0.89100 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.73 9.99 84.03 0.84 -13.89 16 8 H 0.07 4.09 7.83 -2.92 -0.02 4.07 16 9 N -0.74 -39.91 5.60 -343.44 -1.92 -41.84 16 10 C 0.15 6.58 6.58 86.38 0.57 7.15 16 11 C 0.12 4.33 5.52 86.38 0.48 4.80 16 12 N -0.60 -16.77 2.47 -821.83 -2.03 -18.81 16 13 C 0.12 2.36 5.02 86.38 0.43 2.80 16 14 C -0.09 -1.62 5.56 29.85 0.17 -1.46 16 15 C -0.09 -1.51 5.13 -19.87 -0.10 -1.62 16 16 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 17 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 18 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 19 C -0.12 -1.73 10.05 22.27 0.22 -1.50 16 20 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 21 C 0.54 16.28 7.45 87.65 0.65 16.94 16 22 O -0.58 -23.27 15.92 -3.04 -0.05 -23.32 16 23 C -0.14 -3.05 4.16 -11.54 -0.05 -3.10 16 24 H 0.14 2.47 6.41 -2.38 -0.02 2.45 16 25 C -0.17 -3.07 6.95 -9.76 -0.07 -3.14 16 26 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 27 C 0.08 1.01 7.54 72.48 0.55 1.55 16 28 O -0.38 -6.02 11.34 -148.98 -1.69 -7.71 16 29 C 0.08 1.06 7.52 72.48 0.55 1.61 16 30 C -0.17 -3.32 6.69 -9.77 -0.07 -3.38 16 31 H 0.12 2.74 7.82 -2.39 -0.02 2.72 16 32 H 0.25 15.22 8.31 -92.72 -0.77 14.45 16 33 H 0.38 21.12 7.67 -92.71 -0.71 20.40 16 34 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 3.01 8.07 -2.38 -0.02 2.99 16 37 H 0.06 2.50 7.42 -2.39 -0.02 2.49 16 38 H 0.08 1.79 8.07 -2.39 -0.02 1.77 16 39 H 0.10 1.70 6.64 -2.39 -0.02 1.68 16 40 H 0.08 1.35 7.39 -2.39 -0.02 1.33 16 41 H 0.07 1.41 8.08 -2.38 -0.02 1.39 16 42 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 43 H 0.13 1.73 8.06 -2.92 -0.02 1.70 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 45 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -75.20 413.43 2.35 -72.84 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.22 Total: 34.06 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.52 Total: -4.27 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -3.67 Total: -120.66 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.74 Total: -31.03 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -75.20 2.35 -72.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162897889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.791 kcal (2) G-P(sol) polarization free energy of solvation -75.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds