Wall clock time and date at job start Wed Apr 1 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48499 * 109.47050 * 264.78001 * 3 2 1 5 5 H 1.48501 * 109.46972 * 24.77933 * 3 2 1 6 6 H 1.48501 * 109.47034 * 144.77970 * 3 2 1 7 7 C 1.38808 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99631 * 0.46382 * 7 2 1 9 9 N 1.36936 * 120.00534 * 180.47061 * 7 2 1 10 10 C 1.46502 * 120.00278 * 184.24932 * 9 7 2 11 11 C 1.53001 * 109.46824 * 174.01690 * 10 9 7 12 12 C 1.53000 * 115.54989 * 295.40761 * 11 10 9 13 13 C 1.53001 * 109.47209 * 297.17759 * 12 11 10 14 14 N 1.46498 * 109.46798 * 185.21020 * 13 12 11 15 15 C 1.34782 * 119.99801 * 184.08711 * 14 13 12 16 16 O 1.21280 * 119.99826 * 5.31024 * 15 14 13 17 17 C 1.50701 * 119.99856 * 185.30759 * 15 14 13 18 18 H 1.08991 * 109.44011 * 337.55808 * 17 15 14 19 19 C 1.53079 * 109.43289 * 217.63995 * 17 15 14 20 20 C 1.53413 * 108.28672 * 191.74710 * 19 17 15 21 21 O 1.42834 * 108.37371 * 64.74894 * 20 19 17 22 22 C 1.35842 * 117.85845 * 310.85499 * 21 20 19 23 23 C 1.39145 * 118.49570 * 197.02116 * 22 21 20 24 24 C 1.37970 * 120.21672 * 180.17370 * 23 22 21 25 25 C 1.38282 * 119.95861 * 0.02562 * 24 23 22 26 26 C 1.38108 * 119.98437 * 359.92326 * 25 24 23 27 27 C 1.38364 * 121.81202 * 17.06416 * 22 21 20 28 28 C 1.52998 * 117.49600 * 149.74241 * 11 10 9 29 29 C 1.52998 * 117.49921 * 81.08242 * 11 10 9 30 30 H 0.97003 * 119.99828 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99135 * 4.52251 * 9 7 2 32 32 H 1.08993 * 109.46786 * 294.01654 * 10 9 7 33 33 H 1.08998 * 109.46530 * 54.01855 * 10 9 7 34 34 H 1.09001 * 109.47082 * 57.17843 * 12 11 10 35 35 H 1.09000 * 109.47288 * 177.17725 * 12 11 10 36 36 H 1.08999 * 109.46955 * 305.20567 * 13 12 11 37 37 H 1.08995 * 109.47466 * 65.21027 * 13 12 11 38 38 H 0.97003 * 120.00504 * 4.08734 * 14 13 12 39 39 H 1.08992 * 109.69972 * 311.44246 * 19 17 15 40 40 H 1.08999 * 109.69969 * 72.05260 * 19 17 15 41 41 H 1.09006 * 109.68106 * 184.47011 * 20 19 17 42 42 H 1.08997 * 109.68590 * 304.98932 * 20 19 17 43 43 H 1.08002 * 119.89097 * 0.15003 * 23 22 21 44 44 H 1.08003 * 120.01953 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.01139 * 179.89764 * 25 24 23 46 46 H 1.08001 * 119.84239 * 180.02562 * 26 25 24 47 47 H 1.09003 * 117.49910 * 359.97438 * 28 11 10 48 48 H 1.08998 * 117.50046 * 145.01496 * 28 11 10 49 49 H 1.09003 * 117.49908 * 214.97701 * 29 11 10 50 50 H 1.08997 * 117.49769 * 359.97107 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6080 1.9827 -1.3943 5 1 1.3968 2.6820 0.5868 6 1 3.4882 1.4745 0.8075 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0085 9 7 3.3796 -1.2022 0.0092 10 6 4.1127 -2.4670 -0.0854 11 6 5.6110 -2.1804 -0.2029 12 6 6.0442 -1.4425 -1.4713 13 6 5.7308 -2.3051 -2.6954 14 7 6.2570 -1.6552 -3.8983 15 6 6.0261 -2.1950 -5.1116 16 8 5.3033 -3.1631 -5.2170 17 6 6.6660 -1.5953 -6.3372 18 1 6.9310 -0.5572 -6.1369 19 6 5.6798 -1.6529 -7.5065 20 6 6.4411 -1.3171 -8.7953 21 8 7.4085 -2.3421 -9.0269 22 6 8.2153 -2.6986 -7.9938 23 6 9.3765 -3.4122 -8.2740 24 6 10.2198 -3.7955 -7.2515 25 6 9.9111 -3.4705 -5.9434 26 6 8.7600 -2.7613 -5.6616 27 6 7.9108 -2.3720 -6.6842 28 6 6.5761 -3.2171 0.3757 29 6 6.3755 -1.8767 1.0871 30 1 -0.4850 0.8401 -0.0004 31 1 3.8640 -0.3650 0.0827 32 1 3.9258 -3.0629 0.8079 33 1 3.7777 -3.0162 -0.9653 34 1 5.5046 -0.4982 -1.5444 35 1 7.1156 -1.2464 -1.4296 36 1 6.1956 -3.2841 -2.5786 37 1 4.6515 -2.4242 -2.7894 38 1 6.7716 -0.8365 -3.8217 39 1 5.2558 -2.6542 -7.5806 40 1 4.8824 -0.9261 -7.3508 41 1 5.7445 -1.2737 -9.6326 42 1 6.9431 -0.3558 -8.6854 43 1 9.6182 -3.6674 -9.2953 44 1 11.1204 -4.3490 -7.4727 45 1 10.5698 -3.7715 -5.1421 46 1 8.5213 -2.5083 -4.6391 47 1 6.1435 -4.1032 0.8404 48 1 7.5197 -3.3732 -0.1471 49 1 7.1874 -1.1514 1.0322 50 1 5.8110 -1.8806 2.0195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167466119.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:53 Heat of formation + Delta-G solvation = -41.096879 kcal Electronic energy + Delta-G solvation = -30020.243355 eV Core-core repulsion = 26012.351870 eV Total energy + Delta-G solvation = -4007.891485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12263 -40.51510 -39.56625 -38.46717 -36.22072 -35.84484 -35.33218 -33.24215 -31.76114 -31.22703 -31.16069 -28.20192 -27.44948 -24.98707 -24.43925 -24.27582 -23.53343 -22.98065 -21.97926 -20.92222 -20.36851 -19.33361 -18.91891 -18.05722 -17.77012 -17.19989 -17.04431 -16.66799 -16.59556 -16.13428 -15.93862 -15.60802 -15.32011 -15.10031 -15.05943 -14.82563 -14.68779 -14.35962 -14.23878 -14.18892 -13.97663 -13.52201 -13.42220 -13.12915 -12.95858 -12.84882 -12.53038 -12.49417 -12.30323 -12.24309 -12.09148 -11.96342 -11.87061 -11.81558 -11.65993 -11.16359 -11.01781 -10.91066 -10.60854 -10.16604 -9.81530 -9.30227 -9.16738 -8.04666 -5.38387 0.26503 0.42682 1.34163 1.39852 1.47270 1.48428 2.03464 2.34068 2.46866 2.76399 2.84145 3.26111 3.38289 3.54023 3.63463 3.68450 3.76909 3.81800 3.91815 4.02463 4.06187 4.07953 4.12675 4.19625 4.31757 4.40314 4.43380 4.47594 4.50069 4.51632 4.59534 4.62679 4.84620 4.86318 4.91606 4.94822 4.98823 5.04073 5.08593 5.13209 5.23161 5.29068 5.29267 5.34911 5.39672 5.42363 5.55389 5.72964 5.82535 6.19327 6.42382 6.46105 7.06471 7.15680 7.81815 8.04333 9.17346 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.002683 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.335714 B =10434.037710 C =11893.588393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.237 4.237 8 H 0.048 0.952 9 N -0.747 5.747 10 C 0.189 3.811 11 C -0.148 4.148 12 C -0.076 4.076 13 C 0.129 3.871 14 N -0.713 5.713 15 C 0.521 3.479 16 O -0.581 6.581 17 C -0.057 4.057 18 H 0.131 0.869 19 C -0.151 4.151 20 C 0.065 3.935 21 O -0.330 6.330 22 C 0.121 3.879 23 C -0.162 4.162 24 C -0.082 4.082 25 C -0.155 4.155 26 C -0.094 4.094 27 C -0.165 4.165 28 C -0.149 4.149 29 C -0.162 4.162 30 H 0.258 0.742 31 H 0.368 0.632 32 H 0.016 0.984 33 H 0.019 0.981 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.417 0.583 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.130 0.870 47 H 0.091 0.909 48 H 0.120 0.880 49 H 0.116 0.884 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.442 -1.310 -14.942 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.223 1.223 6 H -0.173 1.173 7 C -0.368 4.368 8 H 0.066 0.934 9 N -0.393 5.393 10 C 0.063 3.937 11 C -0.149 4.149 12 C -0.114 4.114 13 C 0.005 3.995 14 N -0.365 5.365 15 C 0.308 3.692 16 O -0.460 6.460 17 C -0.078 4.078 18 H 0.149 0.851 19 C -0.189 4.189 20 C -0.010 4.010 21 O -0.245 6.245 22 C 0.076 3.924 23 C -0.181 4.181 24 C -0.100 4.100 25 C -0.173 4.173 26 C -0.112 4.112 27 C -0.166 4.166 28 C -0.186 4.186 29 C -0.199 4.199 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.150 0.850 42 H 0.106 0.894 43 H 0.161 0.839 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.110 0.890 48 H 0.138 0.862 49 H 0.134 0.866 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.721 -2.186 -15.199 31.689 hybrid contribution -0.826 1.167 0.500 1.515 sum 26.895 -1.019 -14.698 30.666 Atomic orbital electron populations 1.69907 1.07348 1.26796 1.59639 1.25591 0.96176 1.01563 1.02422 0.85363 0.78565 0.78948 0.78566 1.19923 1.22325 1.17265 1.19014 0.82949 0.93269 1.41548 0.93421 1.42513 1.02033 1.04660 1.90079 1.20225 0.88971 0.87282 0.97187 1.21450 0.92009 1.05762 0.95649 1.21138 1.02527 0.97474 0.90219 1.21186 0.98103 0.96595 0.83624 1.45989 1.55806 1.29349 1.05384 1.20753 0.79990 0.83292 0.85202 1.90709 1.39041 1.29424 1.86838 1.20177 0.93357 1.01267 0.92988 0.85142 1.22190 0.98400 1.04086 0.94199 1.23209 0.89824 0.89657 0.98260 1.85965 1.47349 1.55644 1.35525 1.18928 0.90970 0.96356 0.86108 1.20909 0.92959 1.02587 1.01608 1.21334 0.99358 0.97493 0.91812 1.21352 0.97773 1.00301 0.97843 1.21189 0.94253 0.97240 0.98562 1.19454 0.97464 1.06449 0.93276 1.23092 1.00109 0.92817 1.02619 1.23065 1.02215 0.99932 0.94667 0.93317 0.79893 0.96637 0.96334 0.91989 0.87686 0.91407 0.94605 0.74598 0.91912 0.88017 0.84976 0.89420 0.83942 0.82466 0.83485 0.85175 0.89008 0.86194 0.86587 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.71 13.97 21.65 0.30 -64.41 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.96 45.39 27.65 68.60 1.90 47.28 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.43 6.65 99.48 0.66 -9.77 16 7 C -0.24 -13.96 10.47 84.03 0.88 -13.08 16 8 H 0.05 3.13 8.06 -2.91 -0.02 3.11 16 9 N -0.75 -35.27 5.25 -343.45 -1.80 -37.07 16 10 C 0.19 7.39 5.89 86.38 0.51 7.90 16 11 C -0.15 -3.99 1.56 -52.18 -0.08 -4.07 16 12 C -0.08 -1.74 5.12 30.59 0.16 -1.59 16 13 C 0.13 3.42 5.37 86.38 0.46 3.88 16 14 N -0.71 -15.47 4.95 -463.06 -2.29 -17.77 16 15 C 0.52 13.82 5.72 87.66 0.50 14.32 16 16 O -0.58 -21.72 16.10 -3.03 -0.05 -21.77 16 17 C -0.06 -1.11 2.72 -12.24 -0.03 -1.15 16 18 H 0.13 1.67 8.06 -2.39 -0.02 1.65 16 19 C -0.15 -2.94 5.37 30.76 0.17 -2.78 16 20 C 0.06 0.95 7.03 72.12 0.51 1.46 16 21 O -0.33 -6.81 10.27 -91.77 -0.94 -7.76 16 22 C 0.12 2.56 6.47 22.52 0.15 2.71 16 23 C -0.16 -2.84 9.94 22.42 0.22 -2.62 16 24 C -0.08 -1.16 10.04 22.22 0.22 -0.94 16 25 C -0.15 -2.33 10.04 22.25 0.22 -2.11 16 26 C -0.09 -1.72 9.10 22.30 0.20 -1.52 16 27 C -0.17 -3.40 5.43 -19.75 -0.11 -3.51 16 28 C -0.15 -3.06 9.94 30.62 0.30 -2.76 16 29 C -0.16 -3.66 9.95 30.62 0.30 -3.35 16 30 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.37 16.20 5.31 -92.71 -0.49 15.71 16 32 H 0.02 0.63 8.10 -2.39 -0.02 0.61 16 33 H 0.02 0.79 7.05 -2.39 -0.02 0.78 16 34 H 0.06 1.64 7.77 -2.39 -0.02 1.62 16 35 H 0.10 1.58 8.11 -2.39 -0.02 1.56 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.29 7.16 -2.39 -0.02 1.28 16 38 H 0.42 5.87 8.42 -92.71 -0.78 5.09 16 39 H 0.06 1.65 7.48 -2.39 -0.02 1.63 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.13 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.13 2.11 6.89 -2.91 -0.02 2.09 16 47 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -82.36 404.74 1.80 -80.56 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -0.36 Total: 33.64 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.05 Total: -12.71 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -3.80 Total: -119.25 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.99 Total: -29.53 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.28 kcal Total: -82.36 1.80 -80.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167466119.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.461 kcal (2) G-P(sol) polarization free energy of solvation -82.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds