Wall clock time and date at job start Wed Apr 1 2020 02:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46802 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47432 * 299.99808 * 3 2 1 6 6 H 1.48506 * 109.46942 * 60.00199 * 3 2 1 7 7 C 1.38811 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00145 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99666 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99818 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47260 * 175.04426 * 10 9 7 12 12 C 1.52997 * 115.55295 * 65.14492 * 11 10 9 13 13 C 1.53001 * 109.46634 * 65.29123 * 12 11 10 14 14 N 1.46501 * 109.46828 * 174.93431 * 13 12 11 15 15 C 1.34774 * 120.00173 * 180.27523 * 14 13 12 16 16 O 1.21288 * 119.99767 * 359.72325 * 15 14 13 17 17 C 1.50705 * 120.00346 * 179.72527 * 15 14 13 18 18 C 1.52993 * 109.47216 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.13410 * 54.30021 * 18 17 15 20 20 O 1.43952 * 110.15580 * 292.60218 * 18 17 15 21 21 C 1.44117 * 104.85806 * 269.29684 * 20 18 17 22 22 C 1.51081 * 105.97078 * 331.55254 * 21 20 18 23 23 C 1.37973 * 132.68136 * 197.70092 * 22 21 20 24 24 C 1.38296 * 119.91680 * 180.02562 * 23 22 21 25 25 C 1.38264 * 120.03991 * 359.97438 * 24 23 22 26 26 C 1.38288 * 120.04198 * 0.02562 * 25 24 23 27 27 C 1.37968 * 119.92004 * 359.96638 * 26 25 24 28 28 C 1.53006 * 117.49812 * 210.81892 * 11 10 9 29 29 C 1.53007 * 117.49716 * 279.47676 * 11 10 9 30 30 H 0.96990 * 120.00276 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00378 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47192 * 55.03977 * 10 9 7 33 33 H 1.09005 * 109.46920 * 295.04704 * 10 9 7 34 34 H 1.09000 * 109.47098 * 305.29699 * 12 11 10 35 35 H 1.08995 * 109.47388 * 185.29248 * 12 11 10 36 36 H 1.08991 * 109.47457 * 54.93874 * 13 12 11 37 37 H 1.09002 * 109.47507 * 294.93281 * 13 12 11 38 38 H 0.97006 * 120.00225 * 0.02562 * 14 13 12 39 39 H 1.08992 * 109.46780 * 300.00290 * 17 15 14 40 40 H 1.09000 * 109.46828 * 59.99966 * 17 15 14 41 41 H 1.09000 * 110.14012 * 212.42419 * 21 20 18 42 42 H 1.09000 * 110.21136 * 90.71017 * 21 20 18 43 43 H 1.08002 * 120.04142 * 0.02562 * 23 22 21 44 44 H 1.07999 * 119.97804 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.97750 * 179.97438 * 25 24 23 46 46 H 1.08005 * 120.04075 * 180.02562 * 26 25 24 47 47 H 1.09004 * 117.49468 * 214.99802 * 28 11 10 48 48 H 1.08997 * 117.49769 * 0.02562 * 28 11 10 49 49 H 1.08995 * 117.49761 * 359.97438 * 29 11 10 50 50 H 1.08999 * 117.49563 * 144.97227 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0685 -4.8170 0.1260 12 6 0.1085 -4.9947 -1.0520 13 6 0.9018 -5.3781 -2.3028 14 7 -0.0255 -5.6661 -3.3999 15 6 0.4508 -6.0330 -4.6061 16 8 1.6473 -6.1199 -4.7847 17 6 -0.5032 -6.3353 -5.7328 18 6 0.2898 -6.7246 -6.9819 19 1 0.9713 -7.5440 -6.7534 20 8 1.0259 -5.5903 -7.4757 21 6 0.1371 -4.9531 -8.4142 22 6 -0.7452 -6.0504 -8.9621 23 6 -1.5466 -6.1347 -10.0821 24 6 -2.2577 -7.2934 -10.3357 25 6 -2.1652 -8.3661 -9.4683 26 6 -1.3620 -8.2816 -8.3458 27 6 -0.6524 -7.1257 -8.0928 28 6 1.5478 -6.0805 0.8437 29 6 0.5411 -5.1489 1.5234 30 1 -0.4850 0.8399 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.7491 -3.6766 0.8444 33 1 2.6173 -3.7543 -0.9289 34 1 -0.4234 -4.0604 -1.2313 35 1 -0.6084 -5.7824 -0.8208 36 1 1.5038 -6.2624 -2.0945 37 1 1.5547 -4.5525 -2.5863 38 1 -0.9824 -5.5962 -3.2571 39 1 -1.1554 -7.1598 -5.4453 40 1 -1.1060 -5.4523 -5.9452 41 1 0.7091 -4.4934 -9.2202 42 1 -0.4689 -4.2015 -7.9083 43 1 -1.6184 -5.2969 -10.7598 44 1 -2.8856 -7.3603 -11.2118 45 1 -2.7214 -9.2703 -9.6672 46 1 -1.2895 -9.1197 -7.6685 47 1 1.1791 -7.0383 0.4765 48 1 2.5679 -6.0849 1.2275 49 1 0.8994 -4.5410 2.3541 50 1 -0.4899 -5.4935 1.6035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167915273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:12 Heat of formation + Delta-G solvation = -39.008865 kcal Electronic energy + Delta-G solvation = -29122.005116 eV Core-core repulsion = 25114.204174 eV Total energy + Delta-G solvation = -4007.800942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.97929 -40.55978 -39.49709 -38.28828 -36.07160 -35.72741 -33.53146 -32.79483 -32.28190 -31.70621 -30.48951 -27.87457 -27.48324 -25.35693 -24.65147 -24.18337 -23.02405 -22.49731 -22.16630 -21.36534 -19.95674 -19.03935 -18.24159 -17.77499 -17.49772 -17.12874 -16.81085 -16.64289 -16.54295 -16.21771 -16.00033 -15.66597 -15.19522 -15.01041 -14.92235 -14.69695 -14.57109 -14.28956 -14.00527 -13.91435 -13.79103 -13.48503 -13.15847 -13.02226 -12.89037 -12.85160 -12.83411 -12.45953 -12.28632 -12.21497 -12.14255 -11.95469 -11.82337 -11.77798 -11.16216 -11.07661 -10.96124 -10.86153 -10.54955 -10.07596 -9.84826 -9.56607 -8.98159 -7.96482 -5.23692 0.25017 0.38549 1.44544 1.45313 1.55333 1.65867 2.15994 2.52940 2.72976 2.90382 2.94234 3.19912 3.36548 3.54770 3.68983 3.82038 3.83829 3.96071 3.99346 4.05685 4.07702 4.18930 4.20415 4.28170 4.37173 4.41628 4.46697 4.49577 4.53560 4.58836 4.64483 4.67838 4.82699 4.84313 4.91447 4.93052 4.99238 5.08894 5.09155 5.19891 5.26846 5.34193 5.36203 5.40691 5.44187 5.46881 5.48431 5.54012 5.78634 5.99831 6.26515 6.57229 7.28852 7.33424 8.09604 8.35676 9.27070 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.002158 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.638532 B =12970.531453 C =14594.143402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.186 3.814 11 C -0.142 4.142 12 C -0.073 4.073 13 C 0.134 3.866 14 N -0.719 5.719 15 C 0.508 3.492 16 O -0.578 6.578 17 C -0.144 4.144 18 C 0.135 3.865 19 H 0.097 0.903 20 O -0.372 6.372 21 C 0.075 3.925 22 C -0.141 4.141 23 C -0.103 4.103 24 C -0.115 4.115 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.138 4.138 28 C -0.149 4.149 29 C -0.163 4.163 30 H 0.251 0.749 31 H 0.377 0.623 32 H 0.017 0.983 33 H 0.010 0.990 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.031 0.969 38 H 0.415 0.585 39 H 0.140 0.860 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.141 0.859 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.144 0.856 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 -21.995 -17.648 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.143 4.143 12 C -0.111 4.111 13 C 0.010 3.990 14 N -0.372 5.372 15 C 0.296 3.704 16 O -0.458 6.458 17 C -0.183 4.183 18 C 0.077 3.923 19 H 0.115 0.885 20 O -0.291 6.291 21 C -0.001 4.001 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.113 4.113 27 C -0.139 4.139 28 C -0.186 4.186 29 C -0.200 4.200 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.035 0.965 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.251 0.749 39 H 0.158 0.842 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.162 0.838 47 H 0.136 0.864 48 H 0.112 0.888 49 H 0.096 0.904 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.671 -21.877 -17.693 29.442 hybrid contribution -0.106 1.604 0.241 1.625 sum -8.777 -20.273 -17.452 28.153 Atomic orbital electron populations 1.69803 1.06351 1.25928 1.59548 1.25497 0.96457 1.00809 1.03784 0.85124 0.78119 0.80049 0.76799 1.19506 1.21984 1.21681 1.19638 0.91319 0.85615 1.41108 0.91316 1.42424 1.05640 1.00586 1.89081 1.20253 0.92728 0.84247 0.96810 1.21419 1.01313 0.97239 0.94353 1.21072 0.96649 1.01961 0.91377 1.21088 0.92245 0.99656 0.85996 1.45943 1.11175 1.69384 1.10670 1.21044 0.89424 0.75951 0.83992 1.90723 1.18435 1.53542 1.83078 1.22109 0.98074 1.06150 0.92008 1.21025 0.91691 0.89118 0.90495 0.88542 1.89316 1.38355 1.42054 1.59353 1.21988 0.91647 0.93897 0.92558 1.21159 0.99763 0.96210 0.97020 1.20717 0.96094 0.99609 0.95692 1.21545 0.98778 0.92561 1.00346 1.21529 0.98260 0.99943 0.93767 1.20732 0.95855 0.96239 0.98483 1.20929 1.00055 0.96240 0.96649 1.23097 0.99612 0.93722 1.02177 1.22978 0.99986 1.02784 0.94213 0.93972 0.79077 0.96489 0.97237 0.92553 0.88400 0.91397 0.95004 0.74859 0.84244 0.87465 0.87775 0.90191 0.84109 0.82883 0.82734 0.83804 0.86401 0.88778 0.90390 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 47.57 29.55 68.60 2.03 49.60 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.24 -14.22 9.99 84.03 0.84 -13.38 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 9 N -0.73 -38.40 5.52 -343.45 -1.89 -40.29 16 10 C 0.19 7.88 5.93 86.38 0.51 8.39 16 11 C -0.14 -4.50 1.56 -52.18 -0.08 -4.58 16 12 C -0.07 -2.05 5.12 30.59 0.16 -1.89 16 13 C 0.13 4.02 5.41 86.38 0.47 4.49 16 14 N -0.72 -17.69 5.56 -463.05 -2.57 -20.26 16 15 C 0.51 14.10 7.74 87.66 0.68 14.77 16 16 O -0.58 -21.97 15.54 7.14 0.11 -21.86 16 17 C -0.14 -2.72 5.37 29.85 0.16 -2.56 16 18 C 0.13 3.05 2.92 29.97 0.09 3.14 16 19 H 0.10 2.37 7.95 -2.39 -0.02 2.35 16 20 O -0.37 -10.76 10.85 -138.79 -1.51 -12.27 16 21 C 0.08 1.58 7.39 71.36 0.53 2.11 16 22 C -0.14 -2.57 6.32 -19.72 -0.12 -2.69 16 23 C -0.10 -1.40 10.04 22.22 0.22 -1.18 16 24 C -0.11 -1.19 10.05 22.29 0.22 -0.96 16 25 C -0.12 -1.18 10.05 22.29 0.22 -0.96 16 26 C -0.10 -1.24 10.04 22.22 0.22 -1.02 16 27 C -0.14 -2.50 5.62 -19.72 -0.11 -2.61 16 28 C -0.15 -3.63 9.94 30.62 0.30 -3.33 16 29 C -0.16 -4.55 9.94 30.62 0.30 -4.24 16 30 H 0.25 14.98 8.31 -92.72 -0.77 14.21 16 31 H 0.38 20.55 7.03 -92.71 -0.65 19.90 16 32 H 0.02 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.01 0.44 7.11 -2.38 -0.02 0.42 16 34 H 0.06 1.89 7.49 -2.39 -0.02 1.87 16 35 H 0.10 2.04 8.09 -2.39 -0.02 2.02 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 1.23 7.23 -2.39 -0.02 1.21 16 38 H 0.41 7.29 8.47 -92.70 -0.79 6.51 16 39 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 1.86 7.97 -2.39 -0.02 1.84 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 45 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 46 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.12 2.25 8.14 -2.38 -0.02 2.24 16 48 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -79.32 413.28 1.04 -78.28 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.49 Total: 36.52 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 5.08 Total: -10.34 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.18 Total: -119.93 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.39 Total: -34.13 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -79.32 1.04 -78.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167915273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.273 kcal (2) G-P(sol) polarization free energy of solvation -79.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds