Wall clock time and date at job start Wed Apr 1 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47185 * 240.00255 * 3 2 1 5 5 H 1.48505 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46651 * 120.00170 * 3 2 1 7 7 C 1.37874 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00125 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99982 * 169.99943 * 10 9 7 12 12 C 1.53238 * 109.33782 * 187.25783 * 11 10 9 13 13 N 1.47085 * 108.51842 * 306.16724 * 12 11 10 14 14 C 1.34780 * 120.87970 * 231.18880 * 13 12 11 15 15 O 1.21282 * 119.99806 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99835 * 180.02562 * 14 13 12 17 17 C 1.53783 * 113.61400 * 180.02562 * 16 14 13 18 18 C 1.53781 * 87.07910 * 89.11655 * 17 16 14 19 19 O 1.42900 * 113.61495 * 270.79652 * 18 17 16 20 20 C 1.50706 * 113.61043 * 139.98127 * 18 17 16 21 21 C 1.38233 * 120.00109 * 329.72318 * 20 18 17 22 22 C 1.38239 * 119.99759 * 179.74218 * 21 20 18 23 23 C 1.38234 * 119.99962 * 0.55517 * 22 21 20 24 24 C 1.38238 * 120.00082 * 359.69846 * 23 22 21 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 23 22 26 26 C 1.53777 * 87.08186 * 25.43276 * 18 17 16 27 27 C 1.47076 * 118.23855 * 51.46376 * 13 12 11 28 28 C 1.46892 * 110.99871 * 294.30225 * 10 9 7 29 29 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 60.00134 * 9 7 2 31 31 H 1.08995 * 109.47189 * 299.99440 * 9 7 2 32 32 H 1.08992 * 109.49322 * 67.29501 * 11 10 9 33 33 H 1.08999 * 109.48938 * 307.21300 * 11 10 9 34 34 H 1.08998 * 109.62663 * 186.46026 * 12 11 10 35 35 H 1.09000 * 109.63035 * 65.87708 * 12 11 10 36 36 H 1.09000 * 112.90883 * 48.74996 * 16 14 13 37 37 H 1.08994 * 113.61420 * 334.56654 * 17 16 14 38 38 H 1.09002 * 113.68814 * 203.67237 * 17 16 14 39 39 H 0.96699 * 113.99828 * 178.47120 * 19 18 17 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.99953 * 180.27297 * 22 21 20 42 42 H 1.08001 * 120.00280 * 179.72089 * 23 22 21 43 43 H 1.08000 * 120.00578 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00165 * 179.97438 * 25 24 23 45 45 H 1.09004 * 113.61651 * 89.12044 * 26 18 17 46 46 H 1.08999 * 113.61647 * 220.01420 * 26 18 17 47 47 H 1.09000 * 109.62854 * 68.24585 * 27 13 12 48 48 H 1.08998 * 109.63042 * 188.83099 * 27 13 12 49 49 H 1.08999 * 109.49822 * 292.70216 * 28 10 9 50 50 H 1.09002 * 109.49903 * 52.78289 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5215 -4.8936 0.2364 12 6 2.5643 -6.0033 0.4079 13 7 3.4612 -5.9858 -0.7577 14 6 3.7110 -7.1116 -1.4552 15 8 3.1932 -8.1573 -1.1246 16 6 4.6338 -7.0711 -2.6460 17 6 4.8139 -8.4354 -3.3324 18 6 3.5952 -8.0728 -4.1973 19 8 2.3481 -8.4720 -3.6252 20 6 3.7353 -8.4841 -5.6404 21 6 4.9856 -8.5277 -6.2284 22 6 5.1146 -8.9101 -7.5505 23 6 3.9922 -9.2377 -8.2879 24 6 2.7414 -9.1890 -7.7014 25 6 2.6129 -8.8122 -6.3777 26 6 3.9496 -6.5988 -3.9397 27 6 4.0831 -4.7084 -1.1381 28 6 2.9758 -3.6484 -1.2522 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6249 -2.5571 0.8897 32 1 0.8793 -5.1261 -0.6130 33 1 0.9171 -4.8196 1.1404 34 1 2.0638 -6.9695 0.4703 35 1 3.1406 -5.8269 1.3161 36 1 5.5734 -6.5595 -2.4374 37 1 4.6423 -9.2836 -2.6698 38 1 5.7412 -8.5215 -3.8989 39 1 1.5764 -8.2260 -4.1534 40 1 5.8621 -8.2674 -5.6535 41 1 6.0919 -8.9484 -8.0087 42 1 4.0925 -9.5321 -9.3222 43 1 1.8644 -9.4446 -8.2776 44 1 1.6356 -8.7737 -5.9195 45 1 4.6408 -6.1814 -4.6719 46 1 3.0803 -5.9643 -3.7673 47 1 4.8026 -4.4100 -0.3756 48 1 4.5872 -4.8181 -2.0982 49 1 2.3134 -3.8983 -2.0810 50 1 3.4261 -2.6714 -1.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181619503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:54 Heat of formation + Delta-G solvation = -14.900098 kcal Electronic energy + Delta-G solvation = -30624.477375 eV Core-core repulsion = 26617.721868 eV Total energy + Delta-G solvation = -4006.755507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.21866 -39.55383 -38.20106 -37.05242 -34.88857 -34.30124 -32.42476 -31.46866 -31.13861 -30.68711 -28.30614 -26.32038 -26.04849 -25.10535 -23.32894 -22.99521 -22.53834 -21.71790 -20.76224 -19.81188 -18.34585 -17.94605 -16.94968 -16.38797 -16.37401 -15.85798 -15.55540 -15.35929 -15.00471 -14.81168 -14.53697 -14.38825 -14.18221 -13.91237 -13.76942 -13.63354 -13.48827 -13.23795 -12.78953 -12.42186 -12.33214 -12.21999 -11.99056 -11.82417 -11.72758 -11.39179 -11.27108 -11.24907 -11.03242 -10.93460 -10.73091 -10.60544 -10.55906 -10.52720 -10.02532 -9.88755 -9.44896 -9.29750 -9.23775 -8.95749 -8.49650 -8.33593 -7.32037 -6.07465 -4.09686 1.00349 1.08276 2.83745 3.18115 3.29446 3.34351 3.36496 3.41224 3.88463 4.24879 4.32123 4.36736 4.37434 4.54575 4.64942 4.68790 4.74122 4.80417 4.82824 5.13019 5.21121 5.27179 5.27956 5.36664 5.38468 5.44270 5.55887 5.61374 5.62778 5.65841 5.67997 5.78694 5.81815 5.83882 5.90893 5.97865 6.09697 6.14698 6.20085 6.28756 6.31136 6.47084 6.47716 6.66247 6.78121 7.22055 7.27317 7.51129 7.66669 7.74202 8.01328 8.12000 8.45686 8.47305 8.97250 9.54798 11.03290 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002484 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.031494 B =11268.664658 C =12144.986017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.042 3.958 12 C 0.120 3.880 13 N -0.609 5.609 14 C 0.533 3.467 15 O -0.526 6.526 16 C -0.131 4.131 17 C -0.105 4.105 18 C 0.148 3.852 19 O -0.513 6.513 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.143 4.143 27 C 0.110 3.890 28 C 0.052 3.948 29 H 0.262 0.738 30 H -0.010 1.010 31 H 0.031 0.969 32 H 0.025 0.975 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.370 0.630 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.023 0.977 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 -17.480 -14.176 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.087 4.087 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.320 3.680 15 O -0.402 6.402 16 C -0.152 4.152 17 C -0.143 4.143 18 C 0.106 3.894 19 O -0.318 6.318 20 C -0.095 4.095 21 C -0.130 4.130 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.181 4.181 27 C -0.013 4.013 28 C -0.077 4.077 29 H 0.072 0.928 30 H 0.008 0.992 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.218 0.782 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.041 0.959 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.616 -18.077 -13.129 24.736 hybrid contribution -0.618 1.294 -1.179 1.856 sum 9.997 -16.783 -14.308 24.215 Atomic orbital electron populations 1.69949 1.06093 1.26973 1.50690 1.24997 0.94862 0.99344 0.95370 0.86556 0.79435 0.82732 0.78647 1.20264 1.21367 1.20129 1.21096 0.93402 0.89883 1.50464 0.91877 1.19714 0.89997 0.87178 0.96176 1.62067 1.28120 1.02734 1.33151 1.22394 0.95001 0.90552 1.00787 1.21702 0.91686 0.99361 0.87488 1.48140 1.47208 1.08564 1.30420 1.19811 0.81699 0.83317 0.83210 1.90675 1.50969 1.30082 1.68497 1.22291 0.99560 0.99579 0.93799 1.23036 0.95747 0.97765 0.97725 1.20928 0.86906 0.93812 0.87780 1.86804 1.13807 1.81536 1.49635 1.20321 0.93930 0.99511 0.95772 1.21005 0.96776 1.00082 0.95169 1.21154 0.98749 0.99363 0.94284 1.21179 0.92774 1.00346 0.99928 1.21137 0.97643 0.99628 0.94965 1.20952 0.98342 0.99601 0.94367 1.23656 1.01723 0.96810 0.95935 1.22074 0.96098 0.82831 1.00314 1.22391 0.95070 0.98950 0.91320 0.92806 0.99193 0.95055 0.95642 0.90211 0.89496 0.91195 0.88016 0.88812 0.88083 0.78207 0.85628 0.85919 0.86108 0.85974 0.86061 0.88226 0.90034 0.90811 0.90316 0.95860 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.81 8.41 -34.44 -0.29 -14.10 16 8 H 0.06 1.67 7.13 -52.48 -0.37 1.29 16 9 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 10 N -0.54 -11.12 4.62 -235.47 -1.09 -12.21 16 11 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 12 C 0.12 1.93 6.60 -3.60 -0.02 1.91 16 13 N -0.61 -9.31 3.00 -172.18 -0.52 -9.82 16 14 C 0.53 8.05 6.62 -10.99 -0.07 7.98 16 15 O -0.53 -9.65 14.00 -12.95 -0.18 -9.83 16 16 C -0.13 -1.47 2.93 -90.96 -0.27 -1.73 16 17 C -0.11 -1.11 6.68 -25.92 -0.17 -1.28 16 18 C 0.15 1.59 1.69 -90.96 -0.15 1.43 16 19 O -0.51 -6.64 11.22 -53.74 -0.60 -7.24 16 20 C -0.09 -0.91 5.26 -104.62 -0.55 -1.46 16 21 C -0.11 -0.94 8.98 -39.58 -0.36 -1.29 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 25 C -0.11 -1.05 9.37 -39.58 -0.37 -1.42 16 26 C -0.14 -1.46 6.49 -25.92 -0.17 -1.63 16 27 C 0.11 1.56 6.49 -3.36 -0.02 1.54 16 28 C 0.05 0.94 5.47 -3.46 -0.02 0.92 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 31 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 34 H 0.09 1.41 7.06 -51.93 -0.37 1.05 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 0.93 7.53 -51.93 -0.39 0.54 16 37 H 0.09 1.21 7.43 -51.93 -0.39 0.83 16 38 H 0.10 0.77 5.98 -51.93 -0.31 0.46 16 39 H 0.37 3.59 7.26 45.56 0.33 3.92 16 40 H 0.13 0.83 6.24 -52.48 -0.33 0.50 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.95 6.40 -52.49 -0.34 0.61 16 45 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 46 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.90 5.67 -51.93 -0.29 0.60 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 1.82 6.67 -51.93 -0.35 1.47 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -33.29 390.46 -11.57 -44.86 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.98 Total: 3.84 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.80 Total: -6.02 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.87 Total: -47.53 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.78 Total: -17.07 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.29 -11.57 -44.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181619503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.959 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds