Wall clock time and date at job start Wed Apr 1 2020 02:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48500 * 109.47185 * 240.00255 * 3 2 1 5 5 H 1.48505 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46651 * 120.00170 * 3 2 1 7 7 C 1.37874 * 119.99950 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00125 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99982 * 169.99943 * 10 9 7 12 12 C 1.53238 * 109.33782 * 187.25783 * 11 10 9 13 13 N 1.47085 * 108.51842 * 306.16724 * 12 11 10 14 14 C 1.34780 * 120.87970 * 231.18880 * 13 12 11 15 15 O 1.21282 * 119.99806 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99835 * 180.02562 * 14 13 12 17 17 C 1.53783 * 113.61400 * 180.02562 * 16 14 13 18 18 C 1.53781 * 87.07910 * 89.11655 * 17 16 14 19 19 O 1.42900 * 113.61495 * 270.79652 * 18 17 16 20 20 C 1.50706 * 113.61043 * 139.98127 * 18 17 16 21 21 C 1.38233 * 120.00109 * 329.72318 * 20 18 17 22 22 C 1.38239 * 119.99759 * 179.74218 * 21 20 18 23 23 C 1.38234 * 119.99962 * 0.55517 * 22 21 20 24 24 C 1.38238 * 120.00082 * 359.69846 * 23 22 21 25 25 C 1.38235 * 120.00108 * 0.02562 * 24 23 22 26 26 C 1.53777 * 87.08186 * 25.43276 * 18 17 16 27 27 C 1.47076 * 118.23855 * 51.46376 * 13 12 11 28 28 C 1.46892 * 110.99871 * 294.30225 * 10 9 7 29 29 H 0.96998 * 120.00193 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47330 * 60.00134 * 9 7 2 31 31 H 1.08995 * 109.47189 * 299.99440 * 9 7 2 32 32 H 1.08992 * 109.49322 * 67.29501 * 11 10 9 33 33 H 1.08999 * 109.48938 * 307.21300 * 11 10 9 34 34 H 1.08998 * 109.62663 * 186.46026 * 12 11 10 35 35 H 1.09000 * 109.63035 * 65.87708 * 12 11 10 36 36 H 1.09000 * 112.90883 * 48.74996 * 16 14 13 37 37 H 1.08994 * 113.61420 * 334.56654 * 17 16 14 38 38 H 1.09002 * 113.68814 * 203.67237 * 17 16 14 39 39 H 0.96699 * 113.99828 * 178.47120 * 19 18 17 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 18 41 41 H 1.07999 * 119.99953 * 180.27297 * 22 21 20 42 42 H 1.08001 * 120.00280 * 179.72089 * 23 22 21 43 43 H 1.08000 * 120.00578 * 179.97438 * 24 23 22 44 44 H 1.07999 * 120.00165 * 179.97438 * 25 24 23 45 45 H 1.09004 * 113.61651 * 89.12044 * 26 18 17 46 46 H 1.08999 * 113.61647 * 220.01420 * 26 18 17 47 47 H 1.09000 * 109.62854 * 68.24585 * 27 13 12 48 48 H 1.08998 * 109.63042 * 188.83099 * 27 13 12 49 49 H 1.08999 * 109.49822 * 292.70216 * 28 10 9 50 50 H 1.09002 * 109.49903 * 52.78289 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6157 -0.0018 11 6 1.5215 -4.8936 0.2364 12 6 2.5643 -6.0033 0.4079 13 7 3.4612 -5.9858 -0.7577 14 6 3.7110 -7.1116 -1.4552 15 8 3.1932 -8.1573 -1.1246 16 6 4.6338 -7.0711 -2.6460 17 6 4.8139 -8.4354 -3.3324 18 6 3.5952 -8.0728 -4.1973 19 8 2.3481 -8.4720 -3.6252 20 6 3.7353 -8.4841 -5.6404 21 6 4.9856 -8.5277 -6.2284 22 6 5.1146 -8.9101 -7.5505 23 6 3.9922 -9.2377 -8.2879 24 6 2.7414 -9.1890 -7.7014 25 6 2.6129 -8.8122 -6.3777 26 6 3.9496 -6.5988 -3.9397 27 6 4.0831 -4.7084 -1.1381 28 6 2.9758 -3.6484 -1.2522 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6249 -2.5571 0.8897 32 1 0.8793 -5.1261 -0.6130 33 1 0.9171 -4.8196 1.1404 34 1 2.0638 -6.9695 0.4703 35 1 3.1406 -5.8269 1.3161 36 1 5.5734 -6.5595 -2.4374 37 1 4.6423 -9.2836 -2.6698 38 1 5.7412 -8.5215 -3.8989 39 1 1.5764 -8.2260 -4.1534 40 1 5.8621 -8.2674 -5.6535 41 1 6.0919 -8.9484 -8.0087 42 1 4.0925 -9.5321 -9.3222 43 1 1.8644 -9.4446 -8.2776 44 1 1.6356 -8.7737 -5.9195 45 1 4.6408 -6.1814 -4.6719 46 1 3.0803 -5.9643 -3.7673 47 1 4.8026 -4.4100 -0.3756 48 1 4.5872 -4.8181 -2.0982 49 1 2.3134 -3.8983 -2.0810 50 1 3.4261 -2.6714 -1.4279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181619503.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:53 Heat of formation + Delta-G solvation = -36.186563 kcal Electronic energy + Delta-G solvation = -30625.400426 eV Core-core repulsion = 26617.721868 eV Total energy + Delta-G solvation = -4007.678558 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13266 -40.56275 -39.23963 -38.26687 -35.93443 -35.78956 -34.36959 -32.39406 -31.83097 -31.70732 -30.02167 -27.72038 -26.85106 -26.38790 -24.64039 -24.12265 -23.48940 -22.96681 -21.92191 -20.93531 -19.40420 -18.78438 -18.48190 -18.08983 -17.17196 -16.81556 -16.67711 -16.55594 -16.09773 -16.05045 -15.99552 -15.51438 -15.33775 -15.12934 -15.05807 -14.67006 -14.36777 -14.22812 -14.09853 -13.85288 -13.51656 -13.25386 -13.11485 -13.00611 -12.76596 -12.64364 -12.56831 -12.53779 -12.38536 -12.32635 -12.11904 -12.10042 -11.87441 -11.74497 -11.35398 -11.30061 -10.81911 -10.65892 -10.60742 -9.82191 -9.69222 -9.59020 -9.06213 -8.19784 -6.30572 0.39683 0.49867 1.43804 1.47134 1.54749 1.68180 2.00218 2.41554 2.79948 3.10026 3.12669 3.23240 3.44108 3.51692 3.58726 3.67282 3.80111 4.01625 4.05941 4.09318 4.14926 4.22922 4.28170 4.29456 4.42257 4.47070 4.57639 4.59957 4.62908 4.71138 4.74106 4.81106 4.83648 4.93693 4.99758 5.01460 5.02804 5.06425 5.09307 5.18123 5.20594 5.24217 5.52141 5.57076 5.63033 5.63842 5.65531 6.02045 6.10207 6.24267 6.50213 6.56328 6.72845 6.85173 7.27272 7.39550 8.91468 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014414 B = 0.002484 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.031494 B =11268.664658 C =12144.986017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.209 3.791 10 N -0.538 5.538 11 C 0.046 3.954 12 C 0.129 3.871 13 N -0.613 5.613 14 C 0.528 3.472 15 O -0.563 6.563 16 C -0.131 4.131 17 C -0.101 4.101 18 C 0.142 3.858 19 O -0.542 6.542 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.134 4.134 27 C 0.122 3.878 28 C 0.052 3.948 29 H 0.264 0.736 30 H -0.043 1.043 31 H 0.003 0.997 32 H 0.011 0.989 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.378 0.622 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.061 0.939 47 H 0.085 0.915 48 H 0.115 0.885 49 H 0.012 0.988 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.820 -17.198 -15.829 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.089 0.911 9 C 0.083 3.917 10 N -0.263 5.263 11 C -0.083 4.083 12 C 0.006 3.994 13 N -0.347 5.347 14 C 0.317 3.683 15 O -0.442 6.442 16 C -0.152 4.152 17 C -0.138 4.138 18 C 0.100 3.900 19 O -0.349 6.349 20 C -0.109 4.109 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.152 4.152 26 C -0.172 4.172 27 C -0.001 4.001 28 C -0.077 4.077 29 H 0.072 0.928 30 H -0.025 1.025 31 H 0.021 0.979 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.083 0.917 38 H 0.154 0.846 39 H 0.227 0.773 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.139 0.861 45 H 0.147 0.853 46 H 0.080 0.920 47 H 0.103 0.897 48 H 0.133 0.867 49 H 0.030 0.970 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.103 -17.809 -14.797 27.111 hybrid contribution -1.773 1.116 -0.697 2.208 sum 12.330 -16.693 -15.494 25.899 Atomic orbital electron populations 1.70098 1.07948 1.27991 1.51753 1.25963 0.95692 1.03393 0.94768 0.85401 0.78074 0.77616 0.79324 1.18722 1.21354 1.19244 1.21417 0.93843 0.90575 1.50078 0.91101 1.19367 0.90092 0.89021 0.93242 1.62015 1.26987 1.02387 1.34863 1.22399 0.95611 0.90221 1.00099 1.21519 0.91412 0.97894 0.88577 1.48244 1.47046 1.09255 1.30145 1.20547 0.81573 0.82424 0.83706 1.90661 1.52512 1.31422 1.69572 1.22329 0.99812 1.00766 0.92243 1.23141 0.97172 0.96139 0.97381 1.21061 0.86074 0.94243 0.88599 1.86763 1.15178 1.82053 1.50870 1.20302 0.94789 1.00683 0.95119 1.21263 0.96753 0.99776 0.95740 1.21499 0.99846 0.98510 0.94101 1.21522 0.92564 0.99683 1.01022 1.21384 0.98738 0.99606 0.94769 1.21135 0.98616 1.00371 0.95114 1.23673 1.01434 0.96214 0.95864 1.22081 0.94469 0.80802 1.02710 1.22444 0.95589 1.00128 0.89564 0.92751 1.02499 0.97935 0.97081 0.90371 0.89842 0.90180 0.84739 0.91678 0.84607 0.77325 0.83618 0.83534 0.84099 0.84704 0.86052 0.85318 0.91996 0.89654 0.86654 0.96978 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.93 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.52 -28.53 8.41 25.60 0.22 -28.32 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 11.05 4.72 85.55 0.40 11.46 16 10 N -0.54 -22.75 4.62 -898.88 -4.15 -26.90 16 11 C 0.05 1.73 5.62 86.38 0.49 2.21 16 12 C 0.13 4.15 6.60 86.35 0.57 4.72 16 13 N -0.61 -18.05 3.00 -817.03 -2.45 -20.51 16 14 C 0.53 15.44 6.62 87.66 0.58 16.02 16 15 O -0.56 -20.82 14.00 14.66 0.21 -20.61 16 16 C -0.13 -2.58 2.93 -11.02 -0.03 -2.61 16 17 C -0.10 -1.92 6.68 31.12 0.21 -1.71 16 18 C 0.14 2.89 1.69 -11.01 -0.02 2.87 16 19 O -0.54 -14.45 11.22 -131.29 -1.47 -15.92 16 20 C -0.11 -1.93 5.26 -19.86 -0.10 -2.04 16 21 C -0.12 -1.62 8.98 22.27 0.20 -1.42 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 24 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.13 -2.39 9.37 22.27 0.21 -2.19 16 26 C -0.13 -2.43 6.49 31.12 0.20 -2.23 16 27 C 0.12 3.18 6.49 86.51 0.56 3.74 16 28 C 0.05 1.84 5.47 86.54 0.47 2.32 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 31 H 0.00 0.15 7.97 -2.39 -0.02 0.13 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 2.91 7.99 -2.39 -0.02 2.90 16 34 H 0.08 2.77 7.06 -2.39 -0.02 2.75 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.13 1.80 7.53 -2.39 -0.02 1.78 16 37 H 0.06 1.65 7.43 -2.39 -0.02 1.63 16 38 H 0.14 1.55 5.98 -2.39 -0.01 1.54 16 39 H 0.38 7.89 7.26 -74.06 -0.54 7.35 16 40 H 0.15 1.30 6.24 -2.91 -0.02 1.28 16 41 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.12 1.99 6.40 -2.91 -0.02 1.97 16 45 H 0.13 1.60 7.96 -2.39 -0.02 1.58 16 46 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 47 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.12 2.19 5.67 -2.39 -0.01 2.18 16 49 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 50 H 0.09 3.25 6.67 -2.39 -0.02 3.23 16 Total: -1.00 -74.68 390.46 -0.06 -74.74 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.41 Total: 21.21 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.09 Total: -1.16 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -6.32 Total: -103.18 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.27 Total: -36.54 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.68 -0.06 -74.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181619503.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.552 kcal (2) G-P(sol) polarization free energy of solvation -74.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds