Wall clock time and date at job start Wed Apr 1 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00268 * 2 1 4 4 H 1.48491 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47236 * 59.99608 * 3 2 1 6 6 H 1.48504 * 109.47131 * 300.00084 * 3 2 1 7 7 C 1.38808 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00342 * 34.60341 * 7 2 1 9 9 N 1.36935 * 120.00194 * 214.60358 * 7 2 1 10 10 C 1.47032 * 125.64602 * 24.88075 * 9 7 2 11 11 C 1.54329 * 107.26408 * 178.85293 * 10 9 7 12 12 H 1.09000 * 110.51637 * 96.45498 * 11 10 9 13 13 O 1.42901 * 110.99810 * 219.60095 * 11 10 9 14 14 C 1.55153 * 103.02164 * 338.13802 * 11 10 9 15 15 H 1.09004 * 111.00466 * 277.23187 * 14 11 10 16 16 N 1.46500 * 111.00484 * 153.38492 * 14 11 10 17 17 C 1.34772 * 120.00394 * 161.34967 * 16 14 11 18 18 O 1.21289 * 120.00110 * 355.08890 * 17 16 14 19 19 C 1.50700 * 120.00240 * 175.08880 * 17 16 14 20 20 C 1.53003 * 115.54977 * 279.43706 * 19 17 16 21 21 C 1.52992 * 109.47426 * 302.90506 * 20 19 17 22 22 C 1.50702 * 109.47379 * 185.17080 * 21 20 19 23 23 C 1.38228 * 119.99764 * 269.72573 * 22 21 20 24 24 C 1.38237 * 120.00019 * 179.78434 * 23 22 21 25 25 C 1.38233 * 119.99765 * 0.46542 * 24 23 22 26 26 C 1.38228 * 120.00118 * 359.76517 * 25 24 23 27 27 C 1.38231 * 120.00007 * 89.99518 * 22 21 20 28 28 C 1.53003 * 117.49700 * 133.73556 * 19 17 16 29 29 C 1.52996 * 117.49932 * 65.11489 * 19 17 16 30 30 C 1.47422 * 125.65238 * 205.19054 * 9 7 2 31 31 H 0.96993 * 119.99769 * 185.06960 * 1 2 3 32 32 H 1.09007 * 109.87851 * 298.39736 * 10 9 7 33 33 H 1.08996 * 109.88169 * 59.56073 * 10 9 7 34 34 H 0.96701 * 114.00259 * 293.77678 * 13 11 10 35 35 H 0.97006 * 119.99760 * 341.35084 * 16 14 11 36 36 H 1.09003 * 109.46816 * 62.90277 * 20 19 17 37 37 H 1.09001 * 109.47202 * 182.89797 * 20 19 17 38 38 H 1.09013 * 109.47084 * 305.16726 * 21 20 19 39 39 H 1.08998 * 109.47912 * 65.16274 * 21 20 19 40 40 H 1.08006 * 120.00240 * 359.97438 * 23 22 21 41 41 H 1.08002 * 120.00208 * 180.25114 * 24 23 22 42 42 H 1.07999 * 119.99810 * 179.79409 * 25 24 23 43 43 H 1.08004 * 120.00079 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.00618 * 359.97438 * 27 22 21 45 45 H 1.08996 * 117.50362 * 359.97438 * 28 19 17 46 46 H 1.09005 * 117.50124 * 145.01988 * 28 19 17 47 47 H 1.08999 * 117.49636 * 214.98228 * 29 19 17 48 48 H 1.08997 * 117.50278 * 359.97438 * 29 19 17 49 49 H 1.09000 * 110.36352 * 322.92529 * 30 9 7 50 50 H 1.08995 * 110.36887 * 85.14496 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3965 1.2125 6 1 1.8916 2.3964 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 1.6135 -2.0550 -0.5302 9 7 3.1979 -1.3068 0.6740 10 6 3.6109 -0.4788 1.8166 11 6 5.0032 -0.9740 2.2617 12 1 5.7868 -0.3588 1.8195 13 8 5.1126 -0.9818 3.6865 14 6 5.0565 -2.4190 1.6992 15 1 4.5535 -3.1175 2.3680 16 7 6.4391 -2.8355 1.4518 17 6 6.7367 -4.1441 1.3278 18 8 5.8780 -4.9813 1.5090 19 6 8.1366 -4.5673 0.9639 20 6 8.4852 -4.4849 -0.5236 21 6 7.4961 -5.3317 -1.3269 22 6 7.9137 -5.3537 -2.7748 23 6 7.4352 -4.3937 -3.6467 24 6 7.8218 -4.4112 -4.9738 25 6 8.6792 -5.3943 -5.4310 26 6 9.1539 -6.3571 -4.5602 27 6 8.7708 -6.3371 -3.2321 28 6 8.7651 -5.7019 1.7754 29 6 9.2500 -4.2637 1.9684 30 6 4.2769 -2.2641 0.3696 31 1 -0.4849 -0.8367 0.0742 32 1 3.6662 0.5674 1.5154 33 1 2.8996 -0.5941 2.6344 34 1 5.0847 -0.1025 4.0880 35 1 7.1403 -2.1694 1.3774 36 1 8.4270 -3.4476 -0.8535 37 1 9.4964 -4.8600 -0.6811 38 1 7.4876 -6.3493 -0.9358 39 1 6.4979 -4.9020 -1.2431 40 1 6.7618 -3.6282 -3.2904 41 1 7.4511 -3.6587 -5.6542 42 1 8.9785 -5.4099 -6.4686 43 1 9.8242 -7.1250 -4.9173 44 1 9.1416 -7.0895 -2.5517 45 1 8.1663 -6.1420 2.5728 46 1 9.4271 -6.3900 1.2497 47 1 10.2310 -4.0055 1.5695 48 1 8.9702 -3.7575 2.8922 49 1 3.8582 -3.2222 0.0615 50 1 4.9276 -1.8672 -0.4095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199635058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:01 Heat of formation + Delta-G solvation = -12.862493 kcal Electronic energy + Delta-G solvation = -30338.136373 eV Core-core repulsion = 26331.469223 eV Total energy + Delta-G solvation = -4006.667150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.37093 -39.36536 -38.45755 -36.83884 -35.33238 -34.11173 -33.79420 -32.03984 -31.02498 -29.55926 -28.75629 -27.64103 -25.06816 -24.09841 -22.85236 -22.73049 -22.56723 -21.05174 -20.89132 -20.27802 -19.49377 -17.62966 -17.17202 -16.92391 -16.82771 -16.15294 -15.72851 -15.52141 -15.17881 -14.89803 -14.65861 -14.28731 -13.78605 -13.67794 -13.64317 -13.48974 -13.28059 -13.22628 -12.98709 -12.78243 -12.54311 -12.41418 -12.17912 -11.82112 -11.74333 -11.61874 -11.49335 -11.27652 -11.10843 -10.99656 -10.82069 -10.61254 -10.42617 -10.24661 -9.99514 -9.67572 -9.47927 -9.33554 -9.06589 -8.94133 -8.82083 -8.37565 -7.07196 -6.44103 -3.30471 1.20481 1.25565 2.68561 3.09548 3.39602 3.44095 3.48409 3.59999 3.65065 4.27676 4.28751 4.53745 4.57534 4.60207 4.69605 4.72693 4.81384 4.85765 4.89286 4.98866 5.13460 5.16169 5.26211 5.31652 5.35763 5.36230 5.38153 5.41268 5.44643 5.47966 5.62319 5.72742 5.77821 5.85306 5.86430 5.88204 5.88584 5.96062 6.09902 6.31837 6.34951 6.37605 6.42870 6.52970 6.55225 6.61518 6.76903 6.86896 7.61222 7.77369 7.80781 8.31489 8.34490 8.94155 9.52011 10.23399 10.99199 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.003274 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.262374 B = 8549.428611 C =10683.473942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.002 3.998 3 Si 1.035 2.965 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.343 4.343 8 H 0.072 0.928 9 N -0.595 5.595 10 C 0.096 3.904 11 C 0.084 3.916 12 H 0.065 0.935 13 O -0.559 6.559 14 C 0.141 3.859 15 H 0.105 0.895 16 N -0.712 5.712 17 C 0.551 3.449 18 O -0.531 6.531 19 C -0.155 4.155 20 C -0.064 4.064 21 C -0.082 4.082 22 C -0.077 4.077 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.119 4.119 28 C -0.144 4.144 29 C -0.165 4.165 30 C 0.124 3.876 31 H 0.269 0.731 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.377 0.623 35 H 0.398 0.602 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.053 0.947 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.137 -7.976 -1.978 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.202 4.202 3 Si 0.865 3.135 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.470 4.470 8 H 0.089 0.911 9 N -0.324 5.324 10 C -0.030 4.030 11 C 0.024 3.976 12 H 0.083 0.917 13 O -0.364 6.364 14 C 0.035 3.965 15 H 0.123 0.877 16 N -0.362 5.362 17 C 0.337 3.663 18 O -0.406 6.406 19 C -0.158 4.158 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.077 4.077 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.137 4.137 28 C -0.182 4.182 29 C -0.202 4.202 30 C -0.003 4.003 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.072 0.928 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 23.221 -7.610 -2.076 24.525 hybrid contribution 0.452 -0.512 -0.049 0.685 sum 23.674 -8.121 -2.125 25.118 Atomic orbital electron populations 1.70843 1.06716 1.29933 1.45890 1.26037 0.95972 1.00707 0.97505 0.84317 0.75491 0.77034 0.76620 1.20745 1.21966 1.22311 1.19842 0.95136 0.98120 1.33871 0.91073 1.44466 1.15998 1.39725 1.32227 1.22300 0.93051 0.95640 0.91981 1.23050 0.97454 0.96124 0.80931 0.91680 1.86521 1.96551 1.33970 1.19347 1.22195 0.81499 0.94652 0.98116 0.87744 1.45842 1.09962 1.07311 1.73079 1.19426 0.88337 0.82329 0.76249 1.90727 1.49166 1.51358 1.49365 1.21491 0.92218 1.07051 0.95025 1.21007 0.99149 1.00876 0.89105 1.20598 0.99571 1.01547 0.90221 1.19928 0.96862 0.95145 0.95736 1.21183 0.99876 0.98724 0.93467 1.21189 0.97821 0.98682 0.95831 1.21134 0.98397 0.95517 0.99594 1.21120 1.00233 0.98882 0.93725 1.21047 0.98280 0.98603 0.95777 1.22984 1.02022 0.91259 1.01902 1.23120 0.97723 0.99439 0.99889 1.21957 0.90329 0.95227 0.92758 0.92073 0.94595 0.93286 0.77570 0.76784 0.90893 0.90729 0.90447 0.90503 0.85814 0.86053 0.86337 0.86304 0.86218 0.88089 0.87924 0.87887 0.88238 0.92846 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.70 55.49 0.76 -26.77 16 2 C 0.00 0.05 5.29 -17.43 -0.09 -0.04 16 3 Si 1.04 25.32 26.22 -169.99 -4.46 20.86 16 4 H -0.28 -6.36 6.12 56.52 0.35 -6.01 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.34 -9.81 10.25 -15.06 -0.15 -9.97 16 8 H 0.07 2.18 8.06 -52.48 -0.42 1.76 16 9 N -0.60 -14.66 3.07 -170.06 -0.52 -15.18 16 10 C 0.10 2.05 5.79 -3.06 -0.02 2.03 16 11 C 0.08 1.40 3.94 -24.90 -0.10 1.30 16 12 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 13 O -0.56 -8.41 13.40 -35.23 -0.47 -8.88 16 14 C 0.14 2.51 3.08 -65.78 -0.20 2.30 16 15 H 0.10 2.16 7.67 -51.93 -0.40 1.76 16 16 N -0.71 -9.99 5.23 -51.73 -0.27 -10.26 16 17 C 0.55 8.05 6.13 -10.99 -0.07 7.98 16 18 O -0.53 -10.04 16.72 5.55 0.09 -9.95 16 19 C -0.15 -1.62 1.96 -155.66 -0.31 -1.92 16 20 C -0.06 -0.60 5.12 -26.73 -0.14 -0.73 16 21 C -0.08 -0.91 5.03 -27.89 -0.14 -1.05 16 22 C -0.08 -0.83 5.13 -104.63 -0.54 -1.37 16 23 C -0.11 -1.29 9.70 -39.59 -0.38 -1.68 16 24 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 25 C -0.13 -1.19 10.05 -39.59 -0.40 -1.59 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 28 C -0.14 -1.33 9.86 -26.73 -0.26 -1.59 16 29 C -0.16 -1.34 9.95 -26.73 -0.27 -1.60 16 30 C 0.12 2.60 6.93 -2.53 -0.02 2.58 16 31 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 32 H 0.04 0.78 3.78 -51.92 -0.20 0.58 16 33 H 0.05 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.38 3.93 9.12 45.56 0.42 4.35 16 35 H 0.40 4.44 8.52 -40.82 -0.35 4.09 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 38 H 0.08 0.86 8.09 -51.92 -0.42 0.44 16 39 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 409.71 15.07 6.17 6.17 Total: -1.00 -34.63 409.71 -10.26 -44.89 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.30 Total: 9.09 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -4.26 Total: -9.97 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.03 Total: -52.22 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.38 Total: -18.83 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -4.46 Total: 20.86 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.63 -10.26 -44.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199635058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.027 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds