Wall clock time and date at job start Wed Apr 1 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48502 * 109.47131 * 240.00094 * 3 2 1 5 5 H 1.48510 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47349 * 119.99731 * 3 2 1 7 7 C 1.38807 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00129 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.46002 * 204.99521 * 10 9 7 12 12 C 1.53191 * 109.31440 * 178.62636 * 11 10 9 13 13 N 1.46926 * 108.89109 * 54.56430 * 12 11 10 14 14 C 1.34780 * 120.62730 * 126.46248 * 13 12 11 15 15 O 1.21276 * 120.00248 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99585 * 180.02562 * 14 13 12 17 17 O 1.42899 * 109.47008 * 179.97438 * 16 14 13 18 18 C 1.42899 * 114.00292 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47583 * 180.02562 * 18 17 16 20 20 C 1.32567 * 120.00273 * 134.99396 * 19 18 17 21 21 C 1.47818 * 120.00211 * 180.02562 * 20 19 18 22 22 C 1.39540 * 120.13568 * 359.73136 * 21 20 19 23 23 C 1.37977 * 119.84685 * 179.67398 * 22 21 20 24 24 C 1.38337 * 120.14458 * 0.62144 * 23 22 21 25 25 C 1.38342 * 120.28807 * 359.67381 * 24 23 22 26 26 C 1.37972 * 120.14072 * 0.02562 * 25 24 23 27 27 C 1.46957 * 118.71783 * 306.64359 * 13 12 11 28 28 C 1.53040 * 109.44874 * 84.93573 * 10 9 7 29 29 H 0.97009 * 119.99843 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46315 * 324.96949 * 10 9 7 32 32 H 1.09003 * 109.49852 * 58.67901 * 11 10 9 33 33 H 1.09001 * 109.52587 * 298.59862 * 11 10 9 34 34 H 1.09002 * 109.58786 * 174.42474 * 12 11 10 35 35 H 1.08996 * 109.58870 * 294.70753 * 12 11 10 36 36 H 1.09002 * 109.47438 * 299.99718 * 16 14 13 37 37 H 1.08999 * 109.47522 * 60.00065 * 16 14 13 38 38 H 1.09007 * 109.47018 * 300.00035 * 18 17 16 39 39 H 1.08997 * 109.47513 * 59.99903 * 18 17 16 40 40 H 1.08003 * 119.99757 * 315.00116 * 19 18 17 41 41 H 1.08003 * 119.99970 * 0.02562 * 20 19 18 42 42 H 1.07990 * 120.07368 * 359.97438 * 22 21 20 43 43 H 1.08004 * 119.92252 * 180.32004 * 23 22 21 44 44 H 1.08009 * 119.85677 * 179.69713 * 24 23 22 45 45 H 1.08005 * 119.92806 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07124 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.46843 * 293.57352 * 27 13 12 48 48 H 1.08997 * 109.71602 * 173.28846 * 27 13 12 49 49 H 1.08995 * 109.49643 * 301.32838 * 28 10 9 50 50 H 1.08996 * 109.49892 * 61.43032 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1803 -4.7522 -0.6092 12 6 1.9616 -6.0695 -0.6390 13 7 2.4437 -6.3675 0.7165 14 6 2.1772 -7.5555 1.2944 15 8 1.5342 -8.3909 0.6948 16 6 2.6781 -7.8459 2.6858 17 8 2.2698 -9.1589 3.0747 18 6 2.6953 -9.5355 4.3859 19 6 2.2126 -10.9304 4.6895 20 6 3.0343 -11.8099 5.2451 21 6 2.5610 -13.1783 5.5424 22 6 1.2482 -13.5457 5.2445 23 6 0.8146 -14.8267 5.5183 24 6 1.6744 -15.7419 6.0986 25 6 2.9753 -15.3821 6.4020 26 6 3.4232 -14.1063 6.1276 27 6 3.2185 -5.3436 1.4314 28 6 2.4231 -4.0343 1.4380 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3879 0.0005 31 1 2.9683 -3.5505 -0.5894 32 1 0.9013 -4.4717 -1.6249 33 1 0.2809 -4.8762 -0.0061 34 1 1.3095 -6.8736 -0.9799 35 1 2.8105 -5.9756 -1.3163 36 1 3.7663 -7.7842 2.7004 37 1 2.2635 -7.1160 3.3810 38 1 3.7839 -9.5091 4.4361 39 1 2.2810 -8.8403 5.1161 40 1 1.1973 -11.2136 4.4543 41 1 4.0496 -11.5266 5.4805 42 1 0.5746 -12.8305 4.7962 43 1 -0.1997 -15.1139 5.2835 44 1 1.3287 -16.7419 6.3154 45 1 3.6418 -16.1015 6.8546 46 1 4.4391 -13.8267 6.3645 47 1 4.1714 -5.1896 0.9249 48 1 3.3979 -5.6673 2.4566 49 1 3.0287 -3.2429 1.8794 50 1 1.5123 -4.1650 2.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201229672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:48 Heat of formation + Delta-G solvation = -25.496799 kcal Electronic energy + Delta-G solvation = -28106.053957 eV Core-core repulsion = 24098.838943 eV Total energy + Delta-G solvation = -4007.215015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.15264 -39.57150 -38.21894 -37.14098 -34.91511 -34.51838 -32.18787 -31.37089 -31.17235 -30.69435 -29.43909 -28.03167 -25.88670 -24.68516 -23.30859 -23.04111 -22.50674 -22.29606 -20.45762 -19.81030 -18.88928 -17.79399 -17.29014 -17.07595 -16.56092 -16.49978 -15.90714 -15.51808 -15.25790 -14.91813 -14.79571 -14.45438 -13.96958 -13.80951 -13.75196 -13.64818 -13.48545 -13.40344 -13.29943 -13.05175 -12.68480 -12.39175 -12.27792 -11.96374 -11.73901 -11.60981 -11.45743 -11.20079 -11.00435 -10.90527 -10.85101 -10.68253 -10.51440 -10.29504 -9.99242 -9.87362 -9.72096 -9.64334 -9.33036 -8.94491 -8.54134 -8.50306 -7.02050 -5.81035 -3.10644 0.50885 1.03261 2.03111 2.61767 2.74980 3.40059 3.44764 3.46035 3.53160 3.69365 4.31278 4.40152 4.53281 4.54896 4.59145 4.67912 4.77627 4.82905 4.90326 4.95307 5.01900 5.05299 5.06827 5.15789 5.22956 5.28622 5.30884 5.36120 5.49733 5.56549 5.57566 5.64458 5.68890 5.88987 5.90501 5.96416 6.02314 6.13911 6.18686 6.20027 6.31385 6.34638 6.39734 6.46759 6.54925 6.60695 6.78823 6.86032 6.99343 7.44818 7.64031 8.20961 8.37060 9.48272 10.05652 10.40251 11.41333 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001415 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.166142 B =19781.961622 C =20085.624518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.118 3.882 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.528 6.528 16 C 0.045 3.955 17 O -0.359 6.359 18 C 0.089 3.911 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.054 4.054 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.110 4.110 27 C 0.106 3.894 28 C -0.152 4.152 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.934 -27.244 12.884 31.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.068 3.932 11 C -0.178 4.178 12 C -0.005 4.005 13 N -0.341 5.341 14 C 0.302 3.698 15 O -0.404 6.404 16 C -0.034 4.034 17 O -0.278 6.278 18 C 0.012 3.988 19 C -0.150 4.150 20 C -0.132 4.132 21 C -0.054 4.054 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.017 4.017 28 C -0.193 4.193 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.585 -27.650 12.422 31.247 hybrid contribution 0.349 1.303 0.347 1.393 sum 7.934 -26.346 12.769 30.333 Atomic orbital electron populations 1.69656 1.05140 1.25832 1.57359 1.24748 0.95485 0.97704 1.02856 0.86285 0.78539 0.83607 0.77828 1.21242 1.21695 1.21289 1.19185 0.90937 0.84109 1.43130 0.91208 1.42428 1.05815 0.99671 1.88497 1.20160 0.94504 0.86127 0.92363 1.22214 0.99217 0.94045 1.02342 1.21619 0.98795 0.98115 0.81932 1.48117 1.54457 1.14335 1.17175 1.20109 0.80357 0.81881 0.87414 1.90702 1.39316 1.45884 1.64515 1.22272 0.99943 0.86272 0.94950 1.88035 1.77427 1.30571 1.31737 1.21497 0.98351 0.94037 0.84865 1.23104 1.00456 0.93653 0.97751 1.21592 0.99253 0.91460 1.00890 1.19028 0.93819 0.93623 0.98906 1.21404 0.95363 0.96690 0.99673 1.21127 0.99928 0.93519 0.99013 1.21237 0.94028 0.99608 0.99163 1.21102 0.96107 0.96359 1.00307 1.21271 0.99430 0.93360 0.98768 1.21901 0.94800 0.88938 0.96104 1.22690 1.00063 0.94600 1.01958 0.93417 0.78237 0.93352 0.90437 0.91793 0.89304 0.91445 0.90250 0.90001 0.92362 0.91637 0.85864 0.86111 0.85525 0.85853 0.86089 0.85955 0.85824 0.91190 0.90781 0.90507 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.38 5.12 -53.39 -0.27 -17.66 16 10 C 0.18 3.30 2.73 -67.89 -0.19 3.11 16 11 C -0.14 -2.26 5.55 -26.61 -0.15 -2.40 16 12 C 0.12 1.67 6.43 -3.71 -0.02 1.65 16 13 N -0.61 -8.27 2.98 -172.74 -0.51 -8.79 16 14 C 0.52 7.56 7.78 -10.98 -0.09 7.47 16 15 O -0.53 -9.86 15.91 -14.35 -0.23 -10.09 16 16 C 0.05 0.49 4.77 36.01 0.17 0.67 16 17 O -0.36 -4.50 9.86 -55.14 -0.54 -5.04 16 18 C 0.09 0.76 6.36 36.00 0.23 0.99 16 19 C -0.13 -1.15 9.31 -36.22 -0.34 -1.48 16 20 C -0.11 -0.89 9.51 -37.57 -0.36 -1.25 16 21 C -0.05 -0.45 5.87 -105.01 -0.62 -1.07 16 22 C -0.11 -0.95 9.40 -39.19 -0.37 -1.32 16 23 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 24 C -0.12 -0.83 10.04 -39.51 -0.40 -1.23 16 25 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 26 C -0.11 -0.81 9.79 -39.20 -0.38 -1.19 16 27 C 0.11 1.26 6.33 -3.69 -0.02 1.24 16 28 C -0.15 -2.39 5.66 -26.61 -0.15 -2.55 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 37 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 38 H 0.06 0.40 7.88 -51.93 -0.41 -0.01 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.12 1.11 6.04 -52.48 -0.32 0.79 16 41 H 0.12 0.73 7.92 -52.48 -0.42 0.32 16 42 H 0.13 0.96 6.17 -52.49 -0.32 0.64 16 43 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 45 H 0.12 0.56 8.06 -52.48 -0.42 0.13 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.07 0.68 5.95 -51.93 -0.31 0.37 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.66 15.07 6.19 6.19 Total: -1.00 -33.72 410.66 -11.27 -44.99 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -7.89 Total: 7.41 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -3.72 Total: -6.88 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.06 Total: -53.35 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.77 Total: -15.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.72 -11.27 -44.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201229672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.494 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds