Wall clock time and date at job start Wed Apr 1 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48502 * 109.47131 * 240.00094 * 3 2 1 5 5 H 1.48510 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47349 * 119.99731 * 3 2 1 7 7 C 1.38807 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00129 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00023 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99990 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.46002 * 204.99521 * 10 9 7 12 12 C 1.53191 * 109.31440 * 178.62636 * 11 10 9 13 13 N 1.46926 * 108.89109 * 54.56430 * 12 11 10 14 14 C 1.34780 * 120.62730 * 126.46248 * 13 12 11 15 15 O 1.21276 * 120.00248 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99585 * 180.02562 * 14 13 12 17 17 O 1.42899 * 109.47008 * 179.97438 * 16 14 13 18 18 C 1.42899 * 114.00292 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47583 * 180.02562 * 18 17 16 20 20 C 1.32567 * 120.00273 * 134.99396 * 19 18 17 21 21 C 1.47818 * 120.00211 * 180.02562 * 20 19 18 22 22 C 1.39540 * 120.13568 * 359.73136 * 21 20 19 23 23 C 1.37977 * 119.84685 * 179.67398 * 22 21 20 24 24 C 1.38337 * 120.14458 * 0.62144 * 23 22 21 25 25 C 1.38342 * 120.28807 * 359.67381 * 24 23 22 26 26 C 1.37972 * 120.14072 * 0.02562 * 25 24 23 27 27 C 1.46957 * 118.71783 * 306.64359 * 13 12 11 28 28 C 1.53040 * 109.44874 * 84.93573 * 10 9 7 29 29 H 0.97009 * 119.99843 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99680 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.46315 * 324.96949 * 10 9 7 32 32 H 1.09003 * 109.49852 * 58.67901 * 11 10 9 33 33 H 1.09001 * 109.52587 * 298.59862 * 11 10 9 34 34 H 1.09002 * 109.58786 * 174.42474 * 12 11 10 35 35 H 1.08996 * 109.58870 * 294.70753 * 12 11 10 36 36 H 1.09002 * 109.47438 * 299.99718 * 16 14 13 37 37 H 1.08999 * 109.47522 * 60.00065 * 16 14 13 38 38 H 1.09007 * 109.47018 * 300.00035 * 18 17 16 39 39 H 1.08997 * 109.47513 * 59.99903 * 18 17 16 40 40 H 1.08003 * 119.99757 * 315.00116 * 19 18 17 41 41 H 1.08003 * 119.99970 * 0.02562 * 20 19 18 42 42 H 1.07990 * 120.07368 * 359.97438 * 22 21 20 43 43 H 1.08004 * 119.92252 * 180.32004 * 23 22 21 44 44 H 1.08009 * 119.85677 * 179.69713 * 24 23 22 45 45 H 1.08005 * 119.92806 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07124 * 180.02562 * 26 25 24 47 47 H 1.09001 * 109.46843 * 293.57352 * 27 13 12 48 48 H 1.08997 * 109.71602 * 173.28846 * 27 13 12 49 49 H 1.08995 * 109.49643 * 301.32838 * 28 10 9 50 50 H 1.08996 * 109.49892 * 61.43032 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1803 -4.7522 -0.6092 12 6 1.9616 -6.0695 -0.6390 13 7 2.4437 -6.3675 0.7165 14 6 2.1772 -7.5555 1.2944 15 8 1.5342 -8.3909 0.6948 16 6 2.6781 -7.8459 2.6858 17 8 2.2698 -9.1589 3.0747 18 6 2.6953 -9.5355 4.3859 19 6 2.2126 -10.9304 4.6895 20 6 3.0343 -11.8099 5.2451 21 6 2.5610 -13.1783 5.5424 22 6 1.2482 -13.5457 5.2445 23 6 0.8146 -14.8267 5.5183 24 6 1.6744 -15.7419 6.0986 25 6 2.9753 -15.3821 6.4020 26 6 3.4232 -14.1063 6.1276 27 6 3.2185 -5.3436 1.4314 28 6 2.4231 -4.0343 1.4380 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3879 0.0005 31 1 2.9683 -3.5505 -0.5894 32 1 0.9013 -4.4717 -1.6249 33 1 0.2809 -4.8762 -0.0061 34 1 1.3095 -6.8736 -0.9799 35 1 2.8105 -5.9756 -1.3163 36 1 3.7663 -7.7842 2.7004 37 1 2.2635 -7.1160 3.3810 38 1 3.7839 -9.5091 4.4361 39 1 2.2810 -8.8403 5.1161 40 1 1.1973 -11.2136 4.4543 41 1 4.0496 -11.5266 5.4805 42 1 0.5746 -12.8305 4.7962 43 1 -0.1997 -15.1139 5.2835 44 1 1.3287 -16.7419 6.3154 45 1 3.6418 -16.1015 6.8546 46 1 4.4391 -13.8267 6.3645 47 1 4.1714 -5.1896 0.9249 48 1 3.3979 -5.6673 2.4566 49 1 3.0287 -3.2429 1.8794 50 1 1.5123 -4.1650 2.0223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201229672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:46 Heat of formation + Delta-G solvation = -44.297990 kcal Electronic energy + Delta-G solvation = -28106.869238 eV Core-core repulsion = 24098.838943 eV Total energy + Delta-G solvation = -4008.030296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.26777 -40.10670 -39.16999 -38.33119 -36.13912 -35.52030 -33.88094 -32.36961 -31.88163 -31.40050 -31.02666 -29.00681 -26.70975 -26.16349 -24.40915 -23.92729 -23.84627 -22.84713 -21.75996 -20.51324 -20.02020 -19.04418 -18.57131 -18.02545 -17.47531 -17.29043 -16.84312 -16.58185 -16.29348 -15.98499 -15.66507 -15.48634 -15.33737 -15.24607 -14.92576 -14.64463 -14.52910 -14.24589 -13.93111 -13.88422 -13.83137 -13.34346 -13.25635 -13.15441 -13.08674 -12.78667 -12.62571 -12.33688 -12.21331 -12.17036 -11.99408 -11.97966 -11.74460 -11.68448 -11.30357 -11.29015 -10.94110 -10.72910 -10.67895 -9.86966 -9.70506 -9.07492 -8.99159 -7.91425 -5.20260 -0.06141 0.49288 1.42563 1.49746 1.52227 1.53346 1.58226 1.81321 2.58541 2.85648 3.02653 3.41765 3.49767 3.81515 3.83263 3.86763 3.91079 4.07500 4.10199 4.15149 4.18833 4.19859 4.25419 4.26999 4.36807 4.40500 4.42175 4.46744 4.54029 4.61927 4.64587 4.68764 4.78286 4.83990 4.87281 5.03007 5.05984 5.08336 5.13355 5.29892 5.34777 5.45572 5.50508 5.55336 5.60989 5.62183 5.63721 5.83531 6.06779 6.10712 6.29764 6.39598 7.11789 7.36015 8.12194 8.34834 9.32077 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.028647 B = 0.001415 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.166142 B =19781.961622 C =20085.624518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.301 1.301 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.123 3.877 13 N -0.605 5.605 14 C 0.509 3.491 15 O -0.578 6.578 16 C 0.048 3.952 17 O -0.395 6.395 18 C 0.088 3.912 19 C -0.152 4.152 20 C -0.105 4.105 21 C -0.076 4.076 22 C -0.134 4.134 23 C -0.131 4.131 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.117 4.117 27 C 0.113 3.887 28 C -0.142 4.142 29 H 0.249 0.751 30 H 0.369 0.631 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.123 0.877 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.092 0.908 48 H 0.112 0.888 49 H 0.070 0.930 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 -28.320 14.410 33.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.167 4.167 12 C 0.000 4.000 13 N -0.339 5.339 14 C 0.298 3.702 15 O -0.458 6.458 16 C -0.031 4.031 17 O -0.314 6.314 18 C 0.013 3.987 19 C -0.170 4.170 20 C -0.123 4.123 21 C -0.076 4.076 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.009 4.009 28 C -0.183 4.183 29 H 0.057 0.943 30 H 0.200 0.800 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.160 0.840 42 H 0.141 0.859 43 H 0.153 0.847 44 H 0.160 0.840 45 H 0.163 0.837 46 H 0.161 0.839 47 H 0.110 0.890 48 H 0.130 0.870 49 H 0.089 0.911 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.755 -28.752 13.968 33.726 hybrid contribution -0.618 1.496 -0.124 1.624 sum 10.137 -27.256 13.844 32.207 Atomic orbital electron populations 1.69829 1.06760 1.25933 1.59869 1.25546 0.96246 1.01097 1.04070 0.85247 0.77145 0.79329 0.78257 1.20439 1.22759 1.20151 1.19620 0.91567 0.85031 1.40542 0.90089 1.42671 1.05358 1.01092 1.88688 1.20438 0.94282 0.84497 0.94428 1.22062 0.98558 0.94622 1.01457 1.21498 0.99114 0.96183 0.83175 1.48203 1.54194 1.14632 1.16846 1.20899 0.79356 0.81287 0.88678 1.90680 1.41587 1.47479 1.66025 1.22377 1.01909 0.86368 0.92463 1.87995 1.78348 1.31346 1.33756 1.21667 0.99741 0.93842 0.83489 1.23122 1.00231 0.94526 0.99159 1.21784 0.99907 0.90893 0.99711 1.19272 0.94132 0.94389 0.99804 1.21567 0.95836 0.97303 1.00432 1.21380 1.00869 0.93429 0.99213 1.21570 0.94124 1.00413 0.98465 1.21458 0.96466 0.96666 0.99887 1.21573 1.00196 0.93453 0.98254 1.22000 0.94241 0.86166 0.98538 1.22464 0.99986 0.96781 0.99093 0.94259 0.79964 0.93004 0.91053 0.93394 0.90319 0.89454 0.86658 0.87823 0.90027 0.90266 0.87337 0.84024 0.85934 0.84669 0.84040 0.83662 0.83923 0.88981 0.86952 0.91097 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 44.87 29.55 68.60 2.03 46.89 16 4 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 9 N -0.74 -35.77 5.12 -322.82 -1.65 -37.42 16 10 C 0.17 6.20 2.73 45.02 0.12 6.32 16 11 C -0.13 -4.15 5.55 30.67 0.17 -3.98 16 12 C 0.12 3.38 6.43 86.36 0.56 3.93 16 13 N -0.60 -15.21 2.98 -818.82 -2.44 -17.65 16 14 C 0.51 14.10 7.78 87.66 0.68 14.78 16 15 O -0.58 -21.66 15.91 16.02 0.25 -21.40 16 16 C 0.05 0.89 4.77 71.24 0.34 1.23 16 17 O -0.40 -9.28 9.86 -129.94 -1.28 -10.56 16 18 C 0.09 1.33 6.36 71.23 0.45 1.78 16 19 C -0.15 -2.58 9.31 24.53 0.23 -2.35 16 20 C -0.11 -1.53 9.51 23.66 0.22 -1.31 16 21 C -0.08 -1.24 5.87 -20.12 -0.12 -1.36 16 22 C -0.13 -2.30 9.40 22.52 0.21 -2.09 16 23 C -0.13 -1.92 10.03 22.23 0.22 -1.69 16 24 C -0.13 -1.57 10.04 22.32 0.22 -1.35 16 25 C -0.13 -1.48 10.03 22.23 0.22 -1.26 16 26 C -0.12 -1.54 9.79 22.52 0.22 -1.32 16 27 C 0.11 2.27 6.33 86.36 0.55 2.82 16 28 C -0.14 -4.23 5.66 30.67 0.17 -4.05 16 29 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 30 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 31 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 2.36 7.01 -2.39 -0.02 2.35 16 35 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.12 1.33 7.95 -2.39 -0.02 1.31 16 37 H 0.10 1.49 7.69 -2.39 -0.02 1.47 16 38 H 0.08 0.82 7.88 -2.38 -0.02 0.81 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 2.09 6.04 -2.91 -0.02 2.07 16 41 H 0.14 1.37 7.92 -2.91 -0.02 1.34 16 42 H 0.12 2.06 6.17 -2.92 -0.02 2.05 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.14 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 46 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 47 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.11 1.48 5.95 -2.39 -0.01 1.47 16 49 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -75.59 410.66 3.18 -72.41 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.21 Total: 31.93 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 5.78 Total: -5.44 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -3.81 Total: -113.82 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -1.03 Total: -31.97 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -75.59 3.18 -72.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201229672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.113 kcal (2) G-P(sol) polarization free energy of solvation -75.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds