Wall clock time and date at job start Wed Apr 1 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00423 * 2 1 4 4 H 1.48498 * 109.46922 * 240.27830 * 3 2 1 5 5 H 1.48504 * 109.46842 * 0.27294 * 3 2 1 6 6 H 1.48493 * 109.47296 * 120.27367 * 3 2 1 7 7 C 1.38821 * 119.99825 * 180.27478 * 2 1 3 8 8 H 1.08000 * 119.99469 * 179.72398 * 7 2 1 9 9 N 1.36931 * 120.00053 * 359.72122 * 7 2 1 10 10 C 1.46493 * 120.00302 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47628 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46588 * 60.00137 * 11 10 9 13 13 C 1.54797 * 109.47331 * 179.97438 * 11 10 9 14 14 N 1.45120 * 109.54184 * 187.87919 * 13 11 10 15 15 C 1.34774 * 118.76217 * 90.73814 * 14 13 11 16 16 O 1.21284 * 119.99520 * 355.31817 * 15 14 13 17 17 C 1.50694 * 120.00631 * 175.32257 * 15 14 13 18 18 C 1.50696 * 115.55089 * 282.14062 * 17 15 14 19 19 C 1.38239 * 120.00253 * 150.10150 * 18 17 15 20 20 C 1.38236 * 120.00010 * 179.76560 * 19 18 17 21 21 C 1.38235 * 119.99793 * 0.51488 * 20 19 18 22 22 C 1.38235 * 120.00178 * 359.73709 * 21 20 19 23 23 C 1.38229 * 120.00055 * 0.02562 * 22 21 20 24 24 C 1.52996 * 117.50345 * 136.42710 * 17 15 14 25 25 C 1.52993 * 60.00208 * 252.51313 * 24 17 15 26 26 C 1.47515 * 122.48327 * 270.71628 * 14 13 11 27 27 C 1.53568 * 111.02961 * 41.62973 * 26 14 13 28 28 C 1.51541 * 109.57939 * 39.97705 * 27 26 14 29 29 O 1.38019 * 109.46740 * 300.00978 * 11 10 9 30 30 H 0.97001 * 119.99791 * 359.72525 * 1 2 3 31 31 H 0.97006 * 119.99824 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.47004 * 300.00405 * 10 9 7 33 33 H 1.09001 * 109.47120 * 59.99917 * 10 9 7 34 34 H 1.09004 * 109.46380 * 307.89624 * 13 11 10 35 35 H 1.09002 * 109.46220 * 67.86942 * 13 11 10 36 36 H 1.07999 * 119.99961 * 0.02562 * 19 18 17 37 37 H 1.07993 * 119.99959 * 180.23137 * 20 19 18 38 38 H 1.08002 * 119.99870 * 179.72370 * 21 20 19 39 39 H 1.08001 * 120.00064 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00047 * 179.97438 * 23 22 21 41 41 H 1.09001 * 117.49819 * 0.02562 * 24 17 15 42 42 H 1.08995 * 117.49945 * 145.02067 * 24 17 15 43 43 H 1.09000 * 117.50108 * 252.50297 * 25 24 17 44 44 H 1.09006 * 117.49785 * 107.49060 * 25 24 17 45 45 H 1.09001 * 109.16686 * 162.02763 * 26 14 13 46 46 H 1.08995 * 109.16473 * 281.28287 * 26 14 13 47 47 H 1.09000 * 109.45363 * 160.01142 * 27 26 14 48 48 H 1.08997 * 109.45284 * 279.96725 * 27 26 14 49 49 H 1.08996 * 109.59173 * 28.38114 * 28 27 26 50 50 H 1.09000 * 109.58882 * 148.81874 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.0989 1.6992 -1.2159 5 1 1.2853 2.7465 0.0067 6 1 3.1090 1.6935 1.2091 7 6 2.0102 -1.2022 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3256 -2.3881 -0.0057 10 6 2.0579 -3.6568 -0.0112 11 6 1.0637 -4.8197 -0.0105 12 1 0.4340 -4.7598 -0.8983 13 6 1.8377 -6.1603 -0.0170 14 7 0.9065 -7.2575 -0.2039 15 6 0.6377 -7.6737 -1.4573 16 8 1.1036 -7.0795 -2.4064 17 6 -0.2417 -8.8770 -1.6795 18 6 0.4184 -10.2139 -1.4605 19 6 -0.3307 -11.2922 -1.0280 20 6 0.2739 -12.5197 -0.8317 21 6 1.6298 -12.6662 -1.0577 22 6 2.3799 -11.5867 -1.4853 23 6 1.7744 -10.3605 -1.6862 24 6 -1.3021 -8.7839 -2.7785 25 6 -1.7203 -8.7499 -1.3072 26 6 0.2432 -7.9350 0.9263 27 6 -0.2168 -6.9207 1.9836 28 6 -0.7760 -5.6905 1.2977 29 8 0.2740 -4.7491 1.1192 30 1 -0.4850 0.8401 0.0040 31 1 0.3555 -2.3880 -0.0020 32 1 2.6813 -3.7126 -0.9037 33 1 2.6880 -3.7165 0.8763 34 1 2.5629 -6.1571 -0.8308 35 1 2.3582 -6.2838 0.9327 36 1 -1.3892 -11.1766 -0.8474 37 1 -0.3120 -13.3630 -0.4974 38 1 2.1031 -13.6241 -0.9001 39 1 3.4393 -11.7011 -1.6614 40 1 2.3605 -9.5169 -2.0198 41 1 -1.3634 -7.8524 -3.3411 42 1 -1.5222 -9.6897 -3.3435 43 1 -2.2157 -9.6332 -0.9042 44 1 -2.0569 -7.7958 -0.9016 45 1 -0.6227 -8.4838 0.5562 46 1 0.9420 -8.6353 1.3836 47 1 -0.9891 -7.3712 2.6071 48 1 0.6313 -6.6350 2.6058 49 1 -1.1866 -5.9681 0.3269 50 1 -1.5590 -5.2515 1.9160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202006990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:38 Heat of formation + Delta-G solvation = 1.168964 kcal Electronic energy + Delta-G solvation = -31123.402217 eV Core-core repulsion = 27117.343517 eV Total energy + Delta-G solvation = -4006.058700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.20441 -39.60593 -38.43146 -36.70704 -35.58359 -34.55026 -32.81686 -31.33544 -30.90783 -30.83925 -28.98229 -26.78106 -25.70297 -24.38669 -23.26837 -22.98309 -22.34776 -21.81791 -21.07293 -20.87810 -18.90608 -17.90343 -17.10666 -16.90990 -16.49248 -16.31416 -15.71402 -15.54311 -15.34823 -14.90050 -14.70888 -14.51245 -14.29607 -13.85846 -13.73450 -13.45431 -13.22638 -13.19421 -13.03256 -12.83660 -12.53753 -12.28547 -12.08795 -12.00079 -11.72930 -11.62845 -11.43760 -11.32077 -11.07958 -10.90545 -10.82551 -10.73632 -10.73103 -10.23226 -10.01990 -9.73941 -9.61568 -9.36019 -9.25701 -8.92808 -8.78911 -8.53773 -6.80827 -5.65806 -2.93733 0.95762 1.06825 2.43337 2.77026 3.20391 3.50984 3.54371 3.55968 3.64034 3.98848 4.11746 4.14021 4.44662 4.51880 4.63260 4.66075 4.67709 4.70424 4.81178 4.83710 5.01251 5.05838 5.19248 5.23635 5.27950 5.29149 5.38620 5.41530 5.49906 5.54506 5.59814 5.63509 5.66414 5.67292 5.69638 5.77422 5.86074 6.00306 6.02499 6.13054 6.13538 6.19390 6.24674 6.37650 6.52728 6.64169 6.69894 6.82453 7.20917 7.77398 8.03783 8.07557 8.52659 9.64003 10.22805 10.59046 11.57164 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.002496 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.549005 B =11216.330362 C =11402.195118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.166 3.834 11 C 0.090 3.910 12 H 0.051 0.949 13 C 0.081 3.919 14 N -0.600 5.600 15 C 0.547 3.453 16 O -0.524 6.524 17 C -0.120 4.120 18 C -0.036 4.036 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.114 4.114 23 C -0.107 4.107 24 C -0.132 4.132 25 C -0.165 4.165 26 C 0.103 3.897 27 C -0.167 4.167 28 C 0.074 3.926 29 O -0.367 6.367 30 H 0.254 0.746 31 H 0.387 0.613 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.044 0.956 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -29.904 0.903 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.369 5.369 10 C 0.038 3.962 11 C 0.030 3.970 12 H 0.069 0.931 13 C -0.043 4.043 14 N -0.332 5.332 15 C 0.333 3.667 16 O -0.400 6.400 17 C -0.123 4.123 18 C -0.036 4.036 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.132 4.132 23 C -0.125 4.125 24 C -0.169 4.169 25 C -0.201 4.201 26 C -0.019 4.019 27 C -0.205 4.205 28 C -0.002 4.002 29 O -0.284 6.284 30 H 0.064 0.936 31 H 0.221 0.779 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.063 0.937 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.684 -29.314 0.544 29.442 hybrid contribution 0.178 0.570 -0.078 0.602 sum -2.506 -28.744 0.466 28.857 Atomic orbital electron populations 1.69669 1.05101 1.25560 1.57853 1.24735 0.95515 0.97606 1.03232 0.86257 0.78479 0.83596 0.77798 1.21321 1.21751 1.21317 1.19191 0.90958 0.84166 1.42491 0.91264 1.42197 1.06049 0.99446 1.89225 1.20610 0.92380 0.84740 0.98456 1.22253 0.92615 0.93940 0.88219 0.93092 1.22455 0.92379 0.86122 1.03306 1.47831 1.44825 1.34630 1.05921 1.19412 0.80732 0.83625 0.82912 1.90749 1.51631 1.56572 1.41019 1.20098 0.90923 0.92524 1.08773 1.18697 0.93546 0.91853 0.99497 1.21001 0.99991 0.92452 1.00137 1.21101 0.95008 0.97147 1.00187 1.21181 0.94296 0.98808 0.99814 1.21148 1.00057 0.92727 0.99226 1.21052 0.94182 0.97959 0.99343 1.23124 0.97721 1.04690 0.91403 1.23291 0.93336 1.04349 0.99162 1.22075 0.97781 0.94714 0.87315 1.22520 1.02698 0.96892 0.98406 1.22111 0.89944 0.88958 0.99231 1.86443 1.44728 1.54281 1.42994 0.93588 0.77873 0.94847 0.95619 0.89024 0.89777 0.85700 0.85893 0.86041 0.85880 0.86070 0.87384 0.87596 0.87222 0.87663 0.89267 0.91760 0.89724 0.89979 0.93720 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.06 55.49 0.72 -28.70 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.72 -19.76 5.49 -59.91 -0.33 -20.09 16 10 C 0.17 3.63 5.95 -4.05 -0.02 3.61 16 11 C 0.09 1.65 2.73 -25.78 -0.07 1.58 16 12 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.08 1.20 4.83 -3.84 -0.02 1.18 16 14 N -0.60 -7.67 2.19 -172.48 -0.38 -8.05 16 15 C 0.55 7.60 5.62 -10.99 -0.06 7.53 16 16 O -0.52 -9.41 16.45 5.55 0.09 -9.32 16 17 C -0.12 -1.25 1.27 -156.82 -0.20 -1.45 16 18 C -0.04 -0.34 5.36 -104.62 -0.56 -0.90 16 19 C -0.12 -0.90 9.36 -39.58 -0.37 -1.27 16 20 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 21 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 22 C -0.11 -0.97 10.05 -39.59 -0.40 -1.37 16 23 C -0.11 -1.11 9.32 -39.58 -0.37 -1.48 16 24 C -0.13 -1.24 9.81 -26.74 -0.26 -1.50 16 25 C -0.16 -1.30 7.45 -26.74 -0.20 -1.49 16 26 C 0.10 1.01 5.86 -3.19 -0.02 0.99 16 27 C -0.17 -1.67 5.79 -27.17 -0.16 -1.83 16 28 C 0.07 1.00 6.37 36.42 0.23 1.23 16 29 O -0.37 -6.67 9.18 -26.55 -0.24 -6.92 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.39 11.23 7.53 -40.82 -0.31 10.92 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.43 7.34 -51.93 -0.38 1.05 16 35 H 0.08 1.14 8.11 -51.93 -0.42 0.71 16 36 H 0.13 0.70 5.95 -52.49 -0.31 0.39 16 37 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.43 7.33 -52.49 -0.38 1.05 16 41 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.11 0.60 6.10 -51.93 -0.32 0.28 16 44 H 0.11 0.88 7.95 -51.93 -0.41 0.47 16 45 H 0.09 0.73 4.60 -51.93 -0.24 0.50 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.91 8.01 -51.93 -0.42 0.50 16 49 H 0.04 0.60 7.28 -51.93 -0.38 0.22 16 50 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -35.34 398.25 -10.44 -45.78 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.77 Total: 8.46 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.52 Total: -5.35 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.02 Total: -56.84 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.15 Total: -16.24 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.34 -10.44 -45.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202006990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.949 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds