Wall clock time and date at job start Wed Apr 1 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48499 * 109.46772 * 90.00230 * 3 2 1 5 5 H 1.48502 * 109.47228 * 209.99860 * 3 2 1 6 6 H 1.48499 * 109.47138 * 330.00211 * 3 2 1 7 7 C 1.38813 * 119.99843 * 180.27465 * 2 1 3 8 8 H 1.07993 * 120.00377 * 359.72524 * 7 2 1 9 9 N 1.36945 * 119.99894 * 179.72439 * 7 2 1 10 10 C 1.46494 * 119.99786 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47127 * 305.00391 * 11 10 9 13 13 C 1.54801 * 109.47209 * 185.01050 * 11 10 9 14 14 N 1.45127 * 109.54168 * 172.11063 * 13 11 10 15 15 C 1.34777 * 118.75708 * 269.29251 * 14 13 11 16 16 O 1.21284 * 119.99877 * 353.96332 * 15 14 13 17 17 C 1.50699 * 119.99961 * 173.97368 * 15 14 13 18 18 C 1.50704 * 115.54532 * 300.13251 * 17 15 14 19 19 C 1.38243 * 119.99473 * 127.29991 * 18 17 15 20 20 C 1.38231 * 119.99501 * 179.78738 * 19 18 17 21 21 C 1.38238 * 120.00161 * 0.43670 * 20 19 18 22 22 C 1.38227 * 120.00086 * 359.81807 * 21 20 19 23 23 C 1.38230 * 120.00410 * 307.56686 * 18 17 15 24 24 C 1.53001 * 117.49722 * 154.46966 * 17 15 14 25 25 C 1.52994 * 117.50068 * 85.80738 * 17 15 14 26 26 C 1.47513 * 122.48539 * 89.28296 * 14 13 11 27 27 C 1.53567 * 111.02720 * 318.37824 * 26 14 13 28 28 C 1.51533 * 109.58590 * 320.02184 * 27 26 14 29 29 O 1.38008 * 109.47035 * 64.99634 * 11 10 9 30 30 H 0.97001 * 119.99565 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99601 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47550 * 300.00069 * 10 9 7 33 33 H 1.09000 * 109.47181 * 60.00166 * 10 9 7 34 34 H 1.09006 * 109.46032 * 292.12615 * 13 11 10 35 35 H 1.08994 * 109.46308 * 52.08931 * 13 11 10 36 36 H 1.07997 * 120.00015 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.99939 * 180.27414 * 20 19 18 38 38 H 1.08005 * 119.99935 * 179.83043 * 21 20 19 39 39 H 1.07999 * 120.00186 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99934 * 359.97438 * 23 18 17 41 41 H 1.08995 * 117.49891 * 359.97438 * 24 17 15 42 42 H 1.09000 * 117.49878 * 145.01744 * 24 17 15 43 43 H 1.09005 * 117.49568 * 214.97736 * 25 17 15 44 44 H 1.08994 * 117.49994 * 359.97205 * 25 17 15 45 45 H 1.09001 * 109.16524 * 197.97518 * 26 14 13 46 46 H 1.09005 * 109.12025 * 78.75091 * 26 14 13 47 47 H 1.08997 * 109.45659 * 199.98328 * 27 26 14 48 48 H 1.09008 * 109.45384 * 80.05449 * 27 26 14 49 49 H 1.09007 * 109.58704 * 331.61660 * 28 27 26 50 50 H 1.09002 * 109.59299 * 211.18986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4703 -2.1374 -0.0058 9 7 3.3797 -1.2022 -0.0115 10 6 4.1121 -2.4708 -0.0181 11 6 5.6163 -2.1913 -0.0229 12 1 5.8626 -1.5428 -0.8637 13 6 6.3887 -3.5261 -0.1574 14 7 7.8010 -3.2524 -0.3495 15 6 8.2711 -3.1213 -1.6058 16 8 7.5436 -3.3397 -2.5513 17 6 9.7006 -2.7036 -1.8356 18 6 10.0854 -1.3624 -1.2661 19 6 11.1900 -1.2526 -0.4421 20 6 11.5454 -0.0216 0.0768 21 6 10.7911 1.0979 -0.2210 22 6 9.6836 0.9871 -1.0406 23 6 9.3306 -0.2431 -1.5631 24 6 10.3578 -3.1275 -3.1507 25 6 10.7658 -3.8018 -1.8384 26 6 8.7413 -3.1122 0.7784 27 6 8.1145 -2.2995 1.9207 28 6 7.3164 -1.1468 1.3455 29 8 5.9725 -1.5702 1.1568 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0111 32 1 3.8525 -3.0450 0.8713 33 1 3.8450 -3.0399 -0.9086 34 1 6.2534 -4.1169 0.7486 35 1 6.0069 -4.0820 -1.0137 36 1 11.7769 -2.1279 -0.2062 37 1 12.4110 0.0650 0.7169 38 1 11.0673 2.0592 0.1866 39 1 9.0941 1.8617 -1.2729 40 1 8.4654 -0.3296 -2.2036 41 1 9.7562 -3.7088 -3.8494 42 1 11.0687 -2.4365 -3.6037 43 1 11.7451 -3.5542 -1.4287 44 1 10.4327 -4.8264 -1.6736 45 1 9.6427 -2.6065 0.4320 46 1 9.0064 -4.1030 1.1476 47 1 8.9031 -1.9096 2.5642 48 1 7.4550 -2.9421 2.5041 49 1 7.7434 -0.8486 0.3879 50 1 7.3407 -0.3045 2.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202006991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:41 Heat of formation + Delta-G solvation = 5.674580 kcal Electronic energy + Delta-G solvation = -31959.103685 eV Core-core repulsion = 27953.240363 eV Total energy + Delta-G solvation = -4005.863322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.30850 -39.54939 -38.63778 -36.62321 -35.71388 -34.73725 -32.86665 -31.30495 -31.12722 -30.96909 -29.26620 -26.96814 -25.83994 -24.36864 -23.40797 -22.77407 -22.15421 -21.73269 -21.17951 -21.02056 -18.95305 -17.96995 -17.64798 -16.83775 -16.60776 -16.43620 -15.88619 -15.45770 -15.31850 -15.00876 -14.87268 -14.56114 -14.29704 -13.85401 -13.79458 -13.50642 -13.48159 -13.17535 -13.09585 -12.73774 -12.56782 -12.40448 -12.15564 -12.05218 -11.84515 -11.63919 -11.53366 -11.40654 -11.13228 -10.97578 -10.86861 -10.82440 -10.78801 -10.31174 -10.07177 -9.91209 -9.51890 -9.49197 -9.22522 -8.92566 -8.82738 -8.61234 -7.13833 -5.69027 -3.03164 0.95101 1.06099 2.32529 2.75952 3.23465 3.44845 3.49113 3.51077 3.54171 3.86905 4.09117 4.13804 4.43105 4.52235 4.60042 4.67686 4.67767 4.69025 4.73142 4.85517 4.94242 5.06754 5.12897 5.17754 5.19992 5.28293 5.32832 5.35381 5.44165 5.50301 5.52214 5.55782 5.61519 5.65067 5.69277 5.75595 5.76461 5.83630 5.92933 6.01726 6.04273 6.12187 6.20956 6.24032 6.45692 6.59511 6.63933 6.71154 7.15066 7.89489 8.01385 8.07301 8.50135 9.29845 10.02474 10.23402 11.49569 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.003611 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.375575 B = 7752.380221 C = 8514.495374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.279 1.279 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.171 3.829 11 C 0.086 3.914 12 H 0.048 0.952 13 C 0.079 3.921 14 N -0.600 5.600 15 C 0.548 3.452 16 O -0.527 6.527 17 C -0.125 4.125 18 C -0.043 4.043 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.105 4.105 24 C -0.132 4.132 25 C -0.156 4.156 26 C 0.097 3.903 27 C -0.164 4.164 28 C 0.070 3.930 29 O -0.371 6.371 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.052 0.948 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.267 -4.898 0.927 31.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.395 5.395 10 C 0.043 3.957 11 C 0.026 3.974 12 H 0.066 0.934 13 C -0.044 4.044 14 N -0.332 5.332 15 C 0.335 3.665 16 O -0.402 6.402 17 C -0.128 4.128 18 C -0.043 4.043 19 C -0.136 4.136 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.169 4.169 25 C -0.193 4.193 26 C -0.025 4.025 27 C -0.203 4.203 28 C -0.006 4.006 29 O -0.290 6.290 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.070 0.930 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 30.489 -5.097 0.578 30.918 hybrid contribution 0.783 1.242 -0.051 1.469 sum 31.272 -3.855 0.528 31.513 Atomic orbital electron populations 1.69707 1.05058 1.25714 1.57956 1.24633 0.95208 0.97138 1.02169 0.86516 0.79122 0.84979 0.77769 1.21039 1.20501 1.21841 1.19069 0.80549 0.94789 1.42584 0.89162 1.42569 1.03915 1.02064 1.91002 1.20588 0.85597 0.90125 0.99403 1.22315 0.96153 0.91940 0.87025 0.93366 1.22442 0.79360 0.98899 1.03732 1.47787 1.09066 1.70603 1.05750 1.19446 0.87395 0.76816 0.82874 1.90734 1.58488 1.49587 1.41418 1.20114 0.92509 0.94655 1.05512 1.18715 0.96022 0.91842 0.97710 1.20997 0.96883 0.98007 0.97760 1.21107 0.99822 0.92473 1.00002 1.21209 0.95374 0.98810 0.98247 1.21209 0.97024 0.97523 0.97126 1.21045 0.99564 0.92169 0.99573 1.23075 1.01462 1.02278 0.90100 1.23163 0.97936 0.96579 1.01627 1.22209 0.92753 1.00468 0.87050 1.22457 1.00862 0.99001 0.97947 1.22170 0.82638 0.95537 1.00272 1.86409 1.27087 1.76986 1.38473 0.93148 0.80366 0.94559 0.93918 0.89595 0.88556 0.85688 0.85821 0.85905 0.85682 0.86050 0.87236 0.87707 0.87447 0.87945 0.88703 0.91711 0.89888 0.90014 0.92964 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.36 13.97 55.49 0.78 -29.59 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 23.29 27.74 -169.99 -4.72 18.58 16 4 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.28 -7.02 6.51 56.52 0.37 -6.65 16 6 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 9 N -0.75 -19.25 5.34 -59.91 -0.32 -19.57 16 10 C 0.17 3.57 5.92 -4.05 -0.02 3.54 16 11 C 0.09 1.50 2.68 -25.78 -0.07 1.43 16 12 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 13 C 0.08 1.13 4.91 -3.83 -0.02 1.11 16 14 N -0.60 -7.44 2.19 -172.47 -0.38 -7.82 16 15 C 0.55 7.38 6.61 -10.99 -0.07 7.31 16 16 O -0.53 -9.13 15.96 5.55 0.09 -9.04 16 17 C -0.12 -1.24 1.15 -156.81 -0.18 -1.42 16 18 C -0.04 -0.40 3.91 -104.62 -0.41 -0.81 16 19 C -0.12 -0.87 7.75 -39.58 -0.31 -1.17 16 20 C -0.12 -0.81 10.05 -39.58 -0.40 -1.20 16 21 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 22 C -0.11 -1.05 10.05 -39.59 -0.40 -1.45 16 23 C -0.11 -1.15 8.07 -39.58 -0.32 -1.47 16 24 C -0.13 -1.16 9.75 -26.69 -0.26 -1.42 16 25 C -0.16 -1.11 9.46 -26.69 -0.25 -1.36 16 26 C 0.10 0.91 5.92 -3.19 -0.02 0.90 16 27 C -0.16 -1.63 5.78 -27.18 -0.16 -1.79 16 28 C 0.07 0.92 6.37 36.42 0.23 1.16 16 29 O -0.37 -6.39 9.38 -26.51 -0.25 -6.64 16 30 H 0.26 7.96 8.31 -40.82 -0.34 7.63 16 31 H 0.36 9.31 5.51 -40.82 -0.22 9.08 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.10 1.47 7.20 -51.93 -0.37 1.10 16 36 H 0.13 0.65 6.35 -52.49 -0.33 0.32 16 37 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 38 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.12 1.54 8.03 -52.49 -0.42 1.12 16 41 H 0.11 1.09 7.90 -51.93 -0.41 0.68 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 0.53 6.50 -51.93 -0.34 0.20 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.79 3.35 -51.93 -0.17 0.62 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.08 0.87 8.01 -51.92 -0.42 0.46 16 49 H 0.05 0.70 5.99 -51.92 -0.31 0.39 16 50 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -35.75 392.34 -9.86 -45.60 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.67 Total: 7.82 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.30 Total: -5.25 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.08 Total: -56.97 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.16 Total: -15.68 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.72 Total: 18.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.75 -9.86 -45.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202006991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.275 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds