Wall clock time and date at job start Wed Apr 1 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48499 * 109.46772 * 90.00230 * 3 2 1 5 5 H 1.48502 * 109.47228 * 209.99860 * 3 2 1 6 6 H 1.48499 * 109.47138 * 330.00211 * 3 2 1 7 7 C 1.38813 * 119.99843 * 180.27465 * 2 1 3 8 8 H 1.07993 * 120.00377 * 359.72524 * 7 2 1 9 9 N 1.36945 * 119.99894 * 179.72439 * 7 2 1 10 10 C 1.46494 * 119.99786 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47140 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47127 * 305.00391 * 11 10 9 13 13 C 1.54801 * 109.47209 * 185.01050 * 11 10 9 14 14 N 1.45127 * 109.54168 * 172.11063 * 13 11 10 15 15 C 1.34777 * 118.75708 * 269.29251 * 14 13 11 16 16 O 1.21284 * 119.99877 * 353.96332 * 15 14 13 17 17 C 1.50699 * 119.99961 * 173.97368 * 15 14 13 18 18 C 1.50704 * 115.54532 * 300.13251 * 17 15 14 19 19 C 1.38243 * 119.99473 * 127.29991 * 18 17 15 20 20 C 1.38231 * 119.99501 * 179.78738 * 19 18 17 21 21 C 1.38238 * 120.00161 * 0.43670 * 20 19 18 22 22 C 1.38227 * 120.00086 * 359.81807 * 21 20 19 23 23 C 1.38230 * 120.00410 * 307.56686 * 18 17 15 24 24 C 1.53001 * 117.49722 * 154.46966 * 17 15 14 25 25 C 1.52994 * 117.50068 * 85.80738 * 17 15 14 26 26 C 1.47513 * 122.48539 * 89.28296 * 14 13 11 27 27 C 1.53567 * 111.02720 * 318.37824 * 26 14 13 28 28 C 1.51533 * 109.58590 * 320.02184 * 27 26 14 29 29 O 1.38008 * 109.47035 * 64.99634 * 11 10 9 30 30 H 0.97001 * 119.99565 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99601 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47550 * 300.00069 * 10 9 7 33 33 H 1.09000 * 109.47181 * 60.00166 * 10 9 7 34 34 H 1.09006 * 109.46032 * 292.12615 * 13 11 10 35 35 H 1.08994 * 109.46308 * 52.08931 * 13 11 10 36 36 H 1.07997 * 120.00015 * 359.97438 * 19 18 17 37 37 H 1.08002 * 119.99939 * 180.27414 * 20 19 18 38 38 H 1.08005 * 119.99935 * 179.83043 * 21 20 19 39 39 H 1.07999 * 120.00186 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.99934 * 359.97438 * 23 18 17 41 41 H 1.08995 * 117.49891 * 359.97438 * 24 17 15 42 42 H 1.09000 * 117.49878 * 145.01744 * 24 17 15 43 43 H 1.09005 * 117.49568 * 214.97736 * 25 17 15 44 44 H 1.08994 * 117.49994 * 359.97205 * 25 17 15 45 45 H 1.09001 * 109.16524 * 197.97518 * 26 14 13 46 46 H 1.09005 * 109.12025 * 78.75091 * 26 14 13 47 47 H 1.08997 * 109.45659 * 199.98328 * 27 26 14 48 48 H 1.09008 * 109.45384 * 80.05449 * 27 26 14 49 49 H 1.09007 * 109.58704 * 331.61660 * 28 27 26 50 50 H 1.09002 * 109.59299 * 211.18986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4402 -0.7000 6 1 1.4477 2.6527 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 1.4703 -2.1374 -0.0058 9 7 3.3797 -1.2022 -0.0115 10 6 4.1121 -2.4708 -0.0181 11 6 5.6163 -2.1913 -0.0229 12 1 5.8626 -1.5428 -0.8637 13 6 6.3887 -3.5261 -0.1574 14 7 7.8010 -3.2524 -0.3495 15 6 8.2711 -3.1213 -1.6058 16 8 7.5436 -3.3397 -2.5513 17 6 9.7006 -2.7036 -1.8356 18 6 10.0854 -1.3624 -1.2661 19 6 11.1900 -1.2526 -0.4421 20 6 11.5454 -0.0216 0.0768 21 6 10.7911 1.0979 -0.2210 22 6 9.6836 0.9871 -1.0406 23 6 9.3306 -0.2431 -1.5631 24 6 10.3578 -3.1275 -3.1507 25 6 10.7658 -3.8018 -1.8384 26 6 8.7413 -3.1122 0.7784 27 6 8.1145 -2.2995 1.9207 28 6 7.3164 -1.1468 1.3455 29 8 5.9725 -1.5702 1.1568 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3621 -0.0111 32 1 3.8525 -3.0450 0.8713 33 1 3.8450 -3.0399 -0.9086 34 1 6.2534 -4.1169 0.7486 35 1 6.0069 -4.0820 -1.0137 36 1 11.7769 -2.1279 -0.2062 37 1 12.4110 0.0650 0.7169 38 1 11.0673 2.0592 0.1866 39 1 9.0941 1.8617 -1.2729 40 1 8.4654 -0.3296 -2.2036 41 1 9.7562 -3.7088 -3.8494 42 1 11.0687 -2.4365 -3.6037 43 1 11.7451 -3.5542 -1.4287 44 1 10.4327 -4.8264 -1.6736 45 1 9.6427 -2.6065 0.4320 46 1 9.0064 -4.1030 1.1476 47 1 8.9031 -1.9096 2.5642 48 1 7.4550 -2.9421 2.5041 49 1 7.7434 -0.8486 0.3879 50 1 7.3407 -0.3045 2.0369 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202006991.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:40 Heat of formation + Delta-G solvation = -16.834464 kcal Electronic energy + Delta-G solvation = -31960.079750 eV Core-core repulsion = 27953.240363 eV Total energy + Delta-G solvation = -4006.839388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.21834 -40.49955 -39.62827 -37.39016 -37.06285 -36.35728 -34.38861 -33.04458 -31.91563 -31.59129 -30.65440 -28.24955 -26.97451 -25.56718 -24.15924 -23.98281 -23.15825 -22.77669 -22.43359 -22.01601 -19.86273 -19.81609 -18.76858 -17.85417 -17.69117 -17.56931 -16.91722 -16.54338 -16.33925 -16.19544 -15.83493 -15.64453 -15.47935 -15.13113 -14.94252 -14.77552 -14.60555 -14.29477 -14.05507 -13.99845 -13.81761 -13.64170 -13.50135 -13.30270 -12.89077 -12.69523 -12.62507 -12.45777 -12.28710 -12.18462 -12.09309 -12.00472 -11.86079 -11.62133 -11.60033 -11.45356 -11.06756 -10.89087 -10.64939 -9.86607 -9.71303 -9.56890 -9.36347 -8.07314 -5.40567 0.32527 0.43927 1.31617 1.34852 1.35371 1.42470 1.82404 2.43600 2.57228 2.62147 2.88642 3.24149 3.31110 3.42135 3.46583 3.79403 3.81556 3.85388 3.92280 3.96767 3.99078 4.06256 4.11494 4.21191 4.26143 4.27529 4.39106 4.45150 4.51470 4.62800 4.63501 4.67934 4.71227 4.72843 4.79818 4.82083 4.90371 5.00326 5.04382 5.05756 5.08520 5.14121 5.15806 5.46215 5.53867 5.59751 5.61395 5.68965 6.04972 6.15967 6.19249 6.63656 7.00481 7.01750 7.76844 7.97184 9.14206 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.003611 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.375575 B = 7752.380221 C = 8514.495374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.059 4.059 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.289 1.289 7 C -0.237 4.237 8 H 0.061 0.939 9 N -0.754 5.754 10 C 0.166 3.834 11 C 0.104 3.896 12 H 0.020 0.980 13 C 0.089 3.911 14 N -0.597 5.597 15 C 0.541 3.459 16 O -0.580 6.580 17 C -0.139 4.139 18 C -0.046 4.046 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.144 4.144 25 C -0.122 4.122 26 C 0.093 3.907 27 C -0.156 4.156 28 C 0.062 3.938 29 O -0.394 6.394 30 H 0.260 0.740 31 H 0.364 0.636 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.091 0.909 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.046 0.954 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 36.403 -4.787 3.183 36.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.215 1.215 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.399 5.399 10 C 0.039 3.961 11 C 0.044 3.956 12 H 0.038 0.962 13 C -0.035 4.035 14 N -0.328 5.328 15 C 0.330 3.670 16 O -0.460 6.460 17 C -0.142 4.142 18 C -0.046 4.046 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.181 4.181 25 C -0.159 4.159 26 C -0.027 4.027 27 C -0.194 4.194 28 C -0.014 4.014 29 O -0.313 6.313 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.161 0.839 44 H 0.124 0.876 45 H 0.129 0.871 46 H 0.110 0.890 47 H 0.135 0.865 48 H 0.096 0.904 49 H 0.064 0.936 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 35.689 -5.008 2.865 36.152 hybrid contribution -0.820 1.174 -0.750 1.617 sum 34.868 -3.834 2.115 35.142 Atomic orbital electron populations 1.69871 1.06868 1.26751 1.59580 1.25437 0.96126 1.01007 1.02487 0.85408 0.78115 0.79968 0.78260 1.19944 1.19145 1.21545 1.19075 0.82361 0.93827 1.41549 0.92101 1.42586 1.02633 1.03809 1.90910 1.20724 0.87919 0.88240 0.99190 1.21885 0.94059 0.93277 0.86406 0.96170 1.22160 0.80608 0.96817 1.03936 1.47882 1.08449 1.69839 1.06640 1.20155 0.88758 0.75640 0.82429 1.90700 1.60263 1.51951 1.43085 1.20015 0.90907 0.96260 1.06998 1.18679 0.96838 0.90601 0.98492 1.21307 0.95784 0.99478 0.96211 1.21507 1.00056 0.91631 0.99296 1.21477 0.94494 1.00381 0.97390 1.21265 0.98199 0.96835 0.98151 1.20897 0.99515 0.93869 1.00680 1.23109 1.01656 1.02997 0.90385 1.23353 0.97983 0.95633 0.98945 1.22508 0.92281 1.02158 0.85776 1.22407 1.01225 0.97555 0.98205 1.22451 0.81074 0.97402 1.00479 1.86337 1.29951 1.77360 1.37701 0.93146 0.80281 0.94137 0.94274 0.87568 0.90149 0.82449 0.82524 0.84026 0.86275 0.89809 0.89357 0.86433 0.83930 0.87602 0.87140 0.89035 0.86455 0.90430 0.93605 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.36 13.97 21.65 0.30 -65.06 16 2 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.96 48.97 27.74 68.60 1.90 50.88 16 4 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.27 -12.92 6.51 99.48 0.65 -12.28 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.24 -14.62 10.47 84.03 0.88 -13.74 16 8 H 0.06 4.02 8.06 -2.91 -0.02 4.00 16 9 N -0.75 -39.72 5.34 -343.47 -1.83 -41.55 16 10 C 0.17 7.20 5.92 86.38 0.51 7.71 16 11 C 0.10 3.74 2.68 31.21 0.08 3.83 16 12 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 13 C 0.09 2.57 4.91 87.25 0.43 3.00 16 14 N -0.60 -14.27 2.19 -817.95 -1.79 -16.06 16 15 C 0.54 14.74 6.61 87.66 0.58 15.32 16 16 O -0.58 -21.47 15.96 -3.04 -0.05 -21.52 16 17 C -0.14 -2.57 1.15 -53.67 -0.06 -2.64 16 18 C -0.05 -0.77 3.91 -19.86 -0.08 -0.85 16 19 C -0.11 -1.08 7.75 22.27 0.17 -0.91 16 20 C -0.11 -0.95 10.05 22.27 0.22 -0.73 16 21 C -0.12 -1.51 10.05 22.27 0.22 -1.29 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.91 8.07 22.27 0.18 -2.73 16 24 C -0.14 -2.40 9.75 30.62 0.30 -2.10 16 25 C -0.12 -1.30 9.46 30.62 0.29 -1.01 16 26 C 0.09 1.42 5.92 86.38 0.51 1.93 16 27 C -0.16 -2.53 5.78 30.30 0.18 -2.36 16 28 C 0.06 1.52 6.37 71.50 0.46 1.97 16 29 O -0.39 -13.45 9.38 -117.78 -1.11 -14.56 16 30 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 31 H 0.36 18.88 5.51 -92.71 -0.51 18.37 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.11 2.60 8.11 -2.38 -0.02 2.59 16 35 H 0.08 2.58 7.20 -2.39 -0.02 2.56 16 36 H 0.16 0.53 6.35 -2.91 -0.02 0.51 16 37 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.12 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.08 2.40 8.03 -2.91 -0.02 2.38 16 41 H 0.09 1.84 7.90 -2.39 -0.02 1.82 16 42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 0.53 6.50 -2.38 -0.02 0.51 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.11 1.35 3.35 -2.39 -0.01 1.35 16 46 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.08 1.39 8.01 -2.38 -0.02 1.37 16 49 H 0.05 1.20 5.99 -2.38 -0.01 1.19 16 50 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -83.03 392.34 3.37 -79.67 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.38 Total: 28.13 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.56 Total: 0.09 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -3.32 Total: -122.68 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.15 Total: -36.08 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.90 Total: 50.88 kcal Total: -83.03 3.37 -79.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202006991.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.832 kcal (2) G-P(sol) polarization free energy of solvation -83.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds