Wall clock time and date at job start Wed Apr 1 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 120.00270 * 2 1 4 4 H 1.48500 * 109.47296 * 269.99613 * 3 2 1 5 5 H 1.48503 * 109.47390 * 29.99762 * 3 2 1 6 6 H 1.48503 * 109.47162 * 149.99774 * 3 2 1 7 7 C 1.38815 * 119.99409 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00402 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99684 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99756 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46718 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47155 * 59.99913 * 11 10 9 13 13 C 1.55331 * 109.40121 * 180.02562 * 11 10 9 14 14 N 1.45116 * 109.25518 * 187.88052 * 13 11 10 15 15 C 1.34775 * 118.75563 * 90.85902 * 14 13 11 16 16 O 1.21550 * 120.00096 * 189.46292 * 15 14 13 17 17 C 1.47846 * 120.00153 * 9.45945 * 15 14 13 18 18 C 1.39575 * 120.14924 * 126.98061 * 17 15 14 19 19 C 1.37949 * 119.85674 * 180.02562 * 18 17 15 20 20 C 1.38355 * 120.14759 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.85744 * 179.97438 * 20 19 18 22 22 C 1.52999 * 117.50104 * 188.74820 * 21 20 19 23 23 C 1.53000 * 117.49926 * 120.08703 * 21 20 19 24 24 C 1.38364 * 120.29257 * 0.27398 * 20 19 18 25 25 C 1.37967 * 120.13800 * 359.45066 * 24 20 19 26 26 C 1.47513 * 122.48760 * 270.57235 * 14 13 11 27 27 C 1.53575 * 111.02368 * 41.88914 * 26 14 13 28 28 C 1.51535 * 109.58274 * 39.97881 * 27 26 14 29 29 O 1.38016 * 109.47109 * 299.99776 * 11 10 9 30 30 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99965 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.47379 * 60.00149 * 10 9 7 33 33 H 1.09004 * 109.47025 * 299.99684 * 10 9 7 34 34 H 1.09002 * 109.50528 * 68.00810 * 13 11 10 35 35 H 1.09000 * 109.69757 * 307.87979 * 13 11 10 36 36 H 1.08010 * 120.06905 * 0.02562 * 18 17 15 37 37 H 1.08009 * 119.92700 * 180.02562 * 19 18 17 38 38 H 1.09001 * 115.55221 * 334.41594 * 21 20 19 39 39 H 1.08997 * 117.50082 * 359.97438 * 22 21 20 40 40 H 1.09001 * 117.50371 * 145.02268 * 22 21 20 41 41 H 1.09005 * 117.49934 * 214.98003 * 23 21 20 42 42 H 1.08998 * 117.50416 * 359.97438 * 23 21 20 43 43 H 1.07994 * 119.93339 * 179.70243 * 24 20 19 44 44 H 1.08002 * 120.06867 * 180.25498 * 25 24 20 45 45 H 1.09001 * 109.16639 * 162.28571 * 26 14 13 46 46 H 1.08996 * 109.16778 * 281.49241 * 26 14 13 47 47 H 1.09010 * 109.44836 * 160.01000 * 27 26 14 48 48 H 1.08997 * 109.45115 * 279.95782 * 27 26 14 49 49 H 1.08988 * 109.59244 * 28.37791 * 28 27 26 50 50 H 1.09000 * 109.58753 * 148.82267 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0024 12 1 5.8789 -1.6204 0.8928 13 6 6.3912 -3.5377 0.0017 14 7 7.8059 -3.2756 0.1907 15 6 8.3002 -3.2577 1.4445 16 8 9.4359 -2.8736 1.6446 17 6 7.4609 -3.7051 2.5764 18 6 7.9331 -4.6797 3.4569 19 6 7.1447 -5.0932 4.5107 20 6 5.8882 -4.5443 4.6956 21 6 5.0323 -5.0012 5.8487 22 6 3.5819 -4.5157 5.8877 23 6 4.6062 -3.9476 6.8731 24 6 5.4115 -3.5822 3.8229 25 6 6.1922 -3.1559 2.7683 26 6 8.7247 -3.0340 -0.9378 27 6 8.0767 -2.1228 -1.9905 28 6 7.2908 -1.0270 -1.2991 29 8 5.9506 -1.4674 -1.1240 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3623 0.0007 32 1 3.8490 -3.0425 -0.8891 33 1 3.8483 -3.0428 0.8909 34 1 6.2400 -4.0443 -0.9516 35 1 6.0279 -4.1712 0.8109 36 1 8.9136 -5.1093 3.3134 37 1 7.5091 -5.8470 5.1930 38 1 5.2363 -6.0069 6.2162 39 1 3.2468 -3.8655 5.0795 40 1 2.8318 -5.2018 6.2812 41 1 4.5297 -4.2603 7.9146 42 1 4.9454 -2.9241 6.7134 43 1 4.4280 -3.1612 3.9699 44 1 5.8206 -2.4018 2.0902 45 1 9.6329 -2.5605 -0.5648 46 1 8.9827 -3.9871 -1.3995 47 1 8.8534 -1.6760 -2.6113 48 1 7.4056 -2.7111 -2.6162 49 1 7.7361 -0.8155 -0.3271 50 1 7.3024 -0.1262 -1.9127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202134109.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:45 Heat of formation + Delta-G solvation = 9.387666 kcal Electronic energy + Delta-G solvation = -31300.067580 eV Core-core repulsion = 27294.365269 eV Total energy + Delta-G solvation = -4005.702311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.10575 -39.51981 -38.59199 -36.75451 -35.50730 -35.02542 -33.32002 -31.39478 -31.12456 -30.73782 -29.15787 -26.92331 -25.61852 -24.46702 -23.15670 -22.57966 -22.31321 -21.77745 -21.17902 -20.51120 -19.51270 -17.80631 -17.63733 -17.37047 -16.70115 -16.39603 -15.97158 -15.45722 -15.16125 -14.90535 -14.56165 -14.47125 -14.28146 -13.99756 -13.66076 -13.55053 -13.40016 -13.04506 -12.90291 -12.72339 -12.63262 -12.45759 -12.22365 -12.06473 -11.77291 -11.61467 -11.42704 -11.32994 -11.14073 -10.92166 -10.86787 -10.80703 -10.53651 -10.34956 -10.13898 -9.99127 -9.59350 -9.53626 -9.09488 -8.91021 -8.71738 -8.66684 -7.23463 -5.76657 -3.11823 0.81643 1.24740 2.47653 2.75882 3.39375 3.40396 3.44260 3.47190 3.73998 3.88117 4.22095 4.37234 4.59921 4.61367 4.63250 4.67794 4.73488 4.80654 4.84136 4.91316 4.95244 5.00575 5.08266 5.15687 5.25701 5.33406 5.40597 5.46795 5.48606 5.54232 5.57939 5.60331 5.64079 5.70850 5.71605 5.83276 5.86845 5.87876 5.91237 5.98310 5.98766 6.19860 6.24212 6.32521 6.39789 6.44144 6.57869 6.74794 7.12381 7.74918 7.93638 7.98579 8.42087 9.21429 9.93915 10.13908 11.41547 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007281 B = 0.004802 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3844.489879 B = 5829.325235 C = 8991.313434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.168 3.832 11 C 0.075 3.925 12 H 0.055 0.945 13 C 0.067 3.933 14 N -0.605 5.605 15 C 0.560 3.440 16 O -0.537 6.537 17 C -0.136 4.136 18 C -0.070 4.070 19 C -0.121 4.121 20 C -0.030 4.030 21 C -0.125 4.125 22 C -0.174 4.174 23 C -0.168 4.168 24 C -0.119 4.119 25 C -0.097 4.097 26 C 0.110 3.890 27 C -0.165 4.165 28 C 0.070 3.930 29 O -0.368 6.368 30 H 0.259 0.741 31 H 0.365 0.635 32 H 0.038 0.962 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.145 0.855 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.050 0.950 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.882 -11.548 6.593 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.395 5.395 10 C 0.040 3.960 11 C 0.015 3.985 12 H 0.072 0.928 13 C -0.057 4.057 14 N -0.337 5.337 15 C 0.349 3.651 16 O -0.415 6.415 17 C -0.139 4.139 18 C -0.088 4.088 19 C -0.139 4.139 20 C -0.031 4.031 21 C -0.143 4.143 22 C -0.210 4.210 23 C -0.205 4.205 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.012 4.012 27 C -0.203 4.203 28 C -0.006 4.006 29 O -0.286 6.286 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.110 0.890 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.101 0.899 49 H 0.068 0.932 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.130 -11.396 6.526 21.585 hybrid contribution 0.774 1.093 0.110 1.344 sum 17.904 -10.303 6.636 21.697 Atomic orbital electron populations 1.69703 1.05081 1.25816 1.57554 1.24630 0.95175 0.97143 1.01946 0.86550 0.79093 0.84991 0.77889 1.20995 1.21847 1.20461 1.19026 0.80435 0.94738 1.43100 0.89150 1.42550 1.03935 1.01954 1.91030 1.20640 0.85338 0.90365 0.99680 1.22788 0.96715 0.90626 0.88410 0.92773 1.22826 0.79434 0.98976 1.04491 1.47829 1.09361 1.70560 1.05938 1.18597 0.86489 0.77185 0.82865 1.90756 1.19559 1.46600 1.84539 1.19793 0.95535 1.00960 0.97581 1.21016 0.99226 0.95387 0.93200 1.20838 0.93840 1.01073 0.98128 1.19349 0.93860 0.95279 0.94577 1.21078 0.96516 0.99230 0.97507 1.23148 0.91377 1.03900 1.02596 1.23044 1.03374 0.98514 0.95586 1.21125 1.00571 0.97493 0.94454 1.22021 0.92180 0.99237 0.98033 1.21859 0.93126 0.99760 0.86455 1.22481 1.00905 0.98488 0.98418 1.22192 0.82484 0.96166 0.99776 1.86432 1.27494 1.71710 1.42920 0.93075 0.80215 0.94367 0.93893 0.89047 0.88488 0.85533 0.85500 0.86871 0.87661 0.88233 0.88448 0.88442 0.84732 0.83762 0.88982 0.91510 0.89609 0.89912 0.93200 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 7 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.54 5.29 -59.91 -0.32 -17.86 16 10 C 0.17 3.07 5.86 -4.04 -0.02 3.04 16 11 C 0.07 1.13 1.78 -25.49 -0.05 1.09 16 12 H 0.05 0.87 5.66 -51.93 -0.29 0.57 16 13 C 0.07 0.82 4.44 -3.55 -0.02 0.81 16 14 N -0.60 -7.53 2.18 -173.24 -0.38 -7.90 16 15 C 0.56 7.97 7.14 -12.33 -0.09 7.88 16 16 O -0.54 -9.06 16.37 5.32 0.09 -8.98 16 17 C -0.14 -1.77 4.82 -104.97 -0.51 -2.28 16 18 C -0.07 -0.80 9.76 -39.19 -0.38 -1.18 16 19 C -0.12 -1.23 9.72 -39.64 -0.39 -1.62 16 20 C -0.03 -0.33 5.62 -104.54 -0.59 -0.92 16 21 C -0.13 -1.14 6.03 -91.77 -0.55 -1.69 16 22 C -0.17 -1.59 9.86 -26.69 -0.26 -1.85 16 23 C -0.17 -1.46 10.17 -26.69 -0.27 -1.73 16 24 C -0.12 -1.44 9.28 -39.63 -0.37 -1.81 16 25 C -0.10 -1.26 7.57 -39.18 -0.30 -1.56 16 26 C 0.11 1.17 6.20 -3.19 -0.02 1.15 16 27 C -0.16 -1.66 5.79 -27.17 -0.16 -1.82 16 28 C 0.07 0.90 6.38 36.42 0.23 1.13 16 29 O -0.37 -5.91 9.18 -26.54 -0.24 -6.15 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.36 8.63 5.39 -40.82 -0.22 8.41 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 35 H 0.10 1.14 5.49 -51.93 -0.28 0.86 16 36 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 1.07 6.16 -51.93 -0.32 0.75 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.13 1.60 6.00 -52.49 -0.31 1.29 16 44 H 0.15 2.01 3.49 -52.49 -0.18 1.83 16 45 H 0.09 1.06 6.93 -51.93 -0.36 0.70 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.08 0.86 8.01 -51.93 -0.42 0.45 16 49 H 0.05 0.68 7.40 -51.94 -0.38 0.29 16 50 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 390.25 15.07 5.88 5.88 Total: -1.00 -33.48 390.25 -10.33 -43.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -7.44 Total: 10.02 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -3.98 Total: -8.16 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.08 Total: -54.04 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.16 Total: -15.13 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.48 -10.33 -43.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202134109.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.206 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds