Wall clock time and date at job start Wed Apr 1 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48494 * 109.47247 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47147 * 300.00228 * 3 2 1 6 6 H 1.48502 * 109.47254 * 60.00112 * 3 2 1 7 7 C 1.38813 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99908 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99871 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47378 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46638 * 305.00012 * 11 10 9 13 13 C 1.54798 * 109.47203 * 185.00760 * 11 10 9 14 14 N 1.45126 * 109.54242 * 172.11019 * 13 11 10 15 15 C 1.34777 * 118.75268 * 269.28951 * 14 13 11 16 16 O 1.21555 * 119.99777 * 170.26687 * 15 14 13 17 17 C 1.47843 * 120.00253 * 350.26490 * 15 14 13 18 18 C 1.39578 * 120.14654 * 52.92517 * 17 15 14 19 19 C 1.37953 * 119.85524 * 179.74543 * 18 17 15 20 20 C 1.38368 * 120.14403 * 0.53394 * 19 18 17 21 21 C 1.50697 * 119.85594 * 179.76344 * 20 19 18 22 22 C 1.52999 * 117.49569 * 8.59878 * 21 20 19 23 23 C 1.52998 * 60.00194 * 252.51213 * 22 21 20 24 24 C 1.38362 * 120.28963 * 359.74065 * 20 19 18 25 25 C 1.37953 * 120.14792 * 359.97438 * 24 20 19 26 26 C 1.47503 * 122.48873 * 89.28331 * 14 13 11 27 27 C 1.53581 * 111.02699 * 318.37910 * 26 14 13 28 28 C 1.51536 * 109.58114 * 320.02121 * 27 26 14 29 29 O 1.38012 * 109.47077 * 64.99306 * 11 10 9 30 30 H 0.97007 * 120.00216 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00266 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47647 * 59.99799 * 10 9 7 33 33 H 1.09000 * 109.46999 * 299.99605 * 10 9 7 34 34 H 1.09005 * 109.45907 * 292.12840 * 13 11 10 35 35 H 1.08997 * 109.46369 * 52.08212 * 13 11 10 36 36 H 1.08002 * 120.06935 * 0.02562 * 18 17 15 37 37 H 1.07995 * 119.93231 * 180.27993 * 19 18 17 38 38 H 1.08996 * 115.55290 * 154.31166 * 21 20 19 39 39 H 1.08996 * 117.50294 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.49658 * 145.01987 * 22 21 20 41 41 H 1.09002 * 117.50083 * 252.51083 * 23 22 21 42 42 H 1.08998 * 117.52003 * 107.48184 * 23 22 21 43 43 H 1.08002 * 119.92534 * 179.97438 * 24 20 19 44 44 H 1.07997 * 120.07660 * 179.97438 * 25 24 20 45 45 H 1.09000 * 109.17035 * 197.98142 * 26 14 13 46 46 H 1.08996 * 109.12446 * 78.74503 * 26 14 13 47 47 H 1.08995 * 109.45152 * 199.98794 * 27 26 14 48 48 H 1.08998 * 109.43363 * 80.04128 * 27 26 14 49 49 H 1.09003 * 109.58652 * 331.61384 * 28 27 26 50 50 H 1.09001 * 109.59085 * 211.18599 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6567 -0.0016 11 6 1.0638 -4.8197 -0.0022 12 1 0.3794 -4.7130 0.8394 13 6 1.8336 -6.1567 0.1251 14 7 0.8906 -7.2439 0.3121 15 6 0.5426 -7.5917 1.5668 16 8 -0.3712 -8.3722 1.7499 17 6 1.2723 -7.0241 2.7206 18 6 1.4211 -5.6419 2.8447 19 6 2.0985 -5.1185 3.9265 20 6 2.6395 -5.9611 4.8815 21 6 3.3828 -5.3825 6.0578 22 6 3.3332 -3.8652 6.2479 23 6 4.6211 -4.5336 5.7628 24 6 2.5004 -7.3324 4.7615 25 6 1.8203 -7.8685 3.6876 26 6 0.2985 -7.9824 -0.8191 27 6 -0.0925 -7.0274 -1.9566 28 6 -0.6914 -5.7629 -1.3747 29 8 0.3473 -4.8117 -1.1817 30 1 -0.4851 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6840 -3.7149 0.8888 33 1 2.6853 -3.7141 -0.8912 34 1 2.4126 -6.3302 -0.7820 35 1 2.5064 -6.1083 0.9813 36 1 1.0029 -4.9833 2.0978 37 1 2.2105 -4.0490 4.0261 38 1 3.3994 -6.0022 6.9544 39 1 2.7625 -3.2855 5.5225 40 1 3.3168 -3.4863 7.2698 41 1 5.4521 -4.5944 6.4655 42 1 4.8983 -4.3939 4.7179 43 1 2.9254 -7.9847 5.5101 44 1 1.7128 -8.9391 3.5948 45 1 -0.5901 -8.5118 -0.4751 46 1 1.0237 -8.7054 -1.1923 47 1 -0.8248 -7.5122 -2.6021 48 1 0.7937 -6.7747 -2.5387 49 1 -1.1628 -5.9884 -0.4181 50 1 -1.4333 -5.3592 -2.0638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202134110.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:47 Heat of formation + Delta-G solvation = -12.811854 kcal Electronic energy + Delta-G solvation = -31264.611849 eV Core-core repulsion = 27257.946894 eV Total energy + Delta-G solvation = -4006.664954 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.13521 -40.43193 -39.67727 -37.55935 -36.73869 -36.36036 -34.67044 -32.91116 -32.02083 -31.68992 -30.26685 -27.92835 -26.91081 -25.54266 -24.45919 -24.00543 -23.09640 -22.87268 -22.38791 -21.33437 -20.50861 -19.23546 -18.70579 -18.42064 -17.75694 -17.25984 -17.05557 -16.65833 -16.32254 -16.07451 -15.90845 -15.45662 -15.22295 -15.15380 -14.91947 -14.80487 -14.40205 -14.35578 -13.98934 -13.95122 -13.73926 -13.52623 -13.32178 -13.16159 -12.80326 -12.75273 -12.55847 -12.44176 -12.26841 -12.12358 -12.03183 -11.90767 -11.80150 -11.65070 -11.39827 -11.26270 -11.05334 -10.96588 -10.59473 -9.99836 -9.74701 -9.55146 -8.97980 -7.91366 -5.20426 -0.10306 0.35217 1.43064 1.49349 1.50309 1.60215 1.79836 2.53968 2.58428 2.65189 3.13475 3.25557 3.43443 3.57632 3.61489 3.70062 3.81954 3.88333 3.92583 4.01174 4.02958 4.09216 4.13987 4.25266 4.29189 4.29889 4.35090 4.39676 4.47284 4.54764 4.63344 4.71061 4.78334 4.79331 4.83102 4.87071 4.96305 5.02885 5.03536 5.10203 5.14736 5.17853 5.26836 5.32888 5.34820 5.40041 5.52270 5.59254 5.87363 6.09579 6.28938 6.66762 6.88530 7.36117 8.09978 8.33952 9.32603 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006998 B = 0.004718 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3999.950916 B = 5933.222637 C = 9419.379458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.739 5.739 10 C 0.163 3.837 11 C 0.090 3.910 12 H 0.038 0.962 13 C 0.080 3.920 14 N -0.600 5.600 15 C 0.557 3.443 16 O -0.570 6.570 17 C -0.151 4.151 18 C -0.106 4.106 19 C -0.130 4.130 20 C -0.030 4.030 21 C -0.125 4.125 22 C -0.185 4.185 23 C -0.160 4.160 24 C -0.113 4.113 25 C -0.072 4.072 26 C 0.106 3.894 27 C -0.152 4.152 28 C 0.067 3.933 29 O -0.392 6.392 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.160 0.840 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.085 0.915 49 H 0.033 0.967 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -18.819 7.341 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.381 5.381 10 C 0.036 3.964 11 C 0.031 3.969 12 H 0.056 0.944 13 C -0.044 4.044 14 N -0.331 5.331 15 C 0.347 3.653 16 O -0.450 6.450 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.148 4.148 20 C -0.030 4.030 21 C -0.143 4.143 22 C -0.222 4.222 23 C -0.197 4.197 24 C -0.130 4.130 25 C -0.090 4.090 26 C -0.015 4.015 27 C -0.190 4.190 28 C -0.009 4.009 29 O -0.311 6.311 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.177 0.823 44 H 0.156 0.844 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.132 0.868 48 H 0.103 0.897 49 H 0.052 0.948 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.809 -19.040 7.239 21.815 hybrid contribution -0.618 1.130 -0.056 1.289 sum 7.191 -17.909 7.183 20.593 Atomic orbital electron populations 1.69850 1.06772 1.25836 1.59734 1.25546 0.96272 1.01057 1.03842 0.85098 0.78433 0.79890 0.76502 1.18660 1.22395 1.22128 1.19670 0.91567 0.85023 1.40766 0.90176 1.42422 1.05541 1.00845 1.89284 1.20781 0.92853 0.83576 0.99163 1.22380 0.93115 0.94710 0.86735 0.94446 1.22570 0.91804 0.84736 1.05327 1.47886 1.44774 1.34560 1.05851 1.18834 0.82323 0.80297 0.83828 1.90728 1.30312 1.38031 1.85961 1.19813 1.03820 0.94482 0.97233 1.21884 0.97748 0.93960 0.98804 1.21144 0.98837 1.00610 0.94203 1.19594 0.95454 0.93535 0.94431 1.21187 1.01325 0.94049 0.97727 1.23157 1.01600 0.93942 1.03497 1.23090 0.91681 1.02138 1.02809 1.21160 0.99247 0.94368 0.98268 1.21242 0.95397 0.99914 0.92475 1.22044 0.99726 0.94216 0.85510 1.22409 1.03463 0.95306 0.97838 1.22340 0.89345 0.89350 0.99834 1.86377 1.49093 1.57431 1.38177 0.94180 0.79582 0.93324 0.95007 0.87517 0.87994 0.85406 0.85532 0.84643 0.89596 0.86894 0.86381 0.89373 0.82275 0.84368 0.89864 0.89116 0.86847 0.89667 0.94807 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.18 13.06 21.65 0.28 -59.89 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 3 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.24 -13.18 9.99 84.03 0.84 -12.34 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.74 -37.62 5.54 -343.46 -1.90 -39.53 16 10 C 0.16 6.34 5.82 86.38 0.50 6.84 16 11 C 0.09 3.00 1.72 31.21 0.05 3.05 16 12 H 0.04 1.40 5.66 -2.38 -0.01 1.39 16 13 C 0.08 2.04 4.41 87.25 0.38 2.42 16 14 N -0.60 -15.49 2.19 -821.38 -1.80 -17.29 16 15 C 0.56 16.72 7.14 86.79 0.62 17.34 16 16 O -0.57 -20.23 16.37 -3.89 -0.06 -20.30 16 17 C -0.15 -4.13 4.83 -20.09 -0.10 -4.23 16 18 C -0.11 -3.02 7.56 22.53 0.17 -2.85 16 19 C -0.13 -3.38 9.28 22.23 0.21 -3.17 16 20 C -0.03 -0.63 5.62 -19.80 -0.11 -0.74 16 21 C -0.13 -2.07 6.04 -11.54 -0.07 -2.14 16 22 C -0.19 -3.29 9.85 30.59 0.30 -2.99 16 23 C -0.16 -2.55 10.16 30.59 0.31 -2.24 16 24 C -0.11 -2.13 9.72 22.23 0.22 -1.92 16 25 C -0.07 -1.62 9.76 22.53 0.22 -1.40 16 26 C 0.11 2.26 6.21 86.38 0.54 2.79 16 27 C -0.15 -3.04 5.79 30.31 0.18 -2.87 16 28 C 0.07 1.87 6.37 71.50 0.46 2.33 16 29 O -0.39 -13.72 9.38 -117.83 -1.11 -14.83 16 30 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 31 H 0.37 20.88 7.65 -92.70 -0.71 20.17 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 2.38 8.11 -2.38 -0.02 2.36 16 35 H 0.10 2.49 5.47 -2.39 -0.01 2.48 16 36 H 0.13 4.11 3.49 -2.91 -0.01 4.10 16 37 H 0.13 3.40 6.00 -2.91 -0.02 3.39 16 38 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.85 6.16 -2.39 -0.01 1.84 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 45 H 0.08 1.97 6.93 -2.39 -0.02 1.95 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.08 1.70 8.01 -2.39 -0.02 1.68 16 49 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 50 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -71.85 393.60 2.87 -68.98 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: 0.25 Total: 40.85 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.18 Total: -5.97 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -3.42 Total: -116.71 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.17 Total: -35.12 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.85 2.87 -68.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202134110.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.166 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds